acsf2 (acsf2)


Basic Information

Item Value
gene id acsf2
gene name acsf2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7078789 ~ 7112191 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259337.3
AACTTTAGTTAAGCTCAAACTTTAACTTTTCCAGGGTCCAATAAAGCAGTGAGTGGTGTGTGCAGATGAGGGCATGATTAGAGTGACTCAGAGATAAacccaggtgtgtgtgtgcgtgtgagacTTCTGTAGGCTCTGTATCTCCGCTGGATCACTGCAGAGGCTCACACTATCGAGGTGTGCCGAGTTTTGTtgcaacacaaaacaacaagcagcagcagcagctctagcCGTCCTGCAGTCTGAACGCCCGGGCTCTGAACACGCTTTAAAGCTGCAGAAATGTCTCCGAAGATTTTGGCAGCTGTCCGCACCGCTGTTCTGCTTTCTAAGCCTGGGAGAGGAGCGCACAGAGCATGGACACCTATTTTAGCTGCTCAACCCAACTGTGCCATCCATGTAGACGGTCCACCCAATGTACCGACTTTGACAACCAGCTATGCTCATGGTGTCTCCTCCGAGTCTCTGCAGTCTCTCACTGTGGGCAAGGCACTGCGTTTGACAACAGAGCGCTATCCGGACCGCGAGGCCGTAGTGTTCGTGCAGAGTGGCATCAGGAAGACCTTTGCTCAATTCCAAAATGACGTGGATCAGGCAGCGGCAGGTCTTGTGGCTTTGGGGCTGAAGAAAGGAGATCGGTTAGGAATGTGGGGACCCAACACATATGAATGGGTTGTGATACAGTATGCCACAGCCAAGGCTGGAATCATTATGGTGTCAGTGAATCCAGCTTATCAGTTACAGGAGCTGGAATATGCATTAAGAAAGGTGCAGTGCAAAGCAATTGTGTGTCCAACACAGTTTAAGACGCAGAAATACTGTGACATGTTGAGGCAACTCTGCCCTGGGATGGACACTGCTTCCCCTGGGGGGATAAAGAGTTCCAGATTGCCAGACTTGAGTACAGTGATTTTGACAGACAGTAAGCAGCCTGGGACCTTTAGCTGGACTGATCTGATGGAGGCGGGGAGCAGTGATCACTTCAACCAGCTGCAGGACATCCAGAAGACACTGTCCTTTGACGACCCCATTAACATCCAGTTCACATCGGGAACAACTGGTAGTCCAAAAGGAGCTGCCCTGTCCCACCACAACATTGTCAACAATGCCTACTTTATTGGCCTGCGTATGGGATATCAGTGGAGGAAAAATGTACGAGTTTGTGTGCCAGTGCCACTTTACCACTGTTTTGGCTCAGTGGGTGGAGGCATAGTAATGGGATTACATGGAATCACAATGGTCTTTCCCTCCTCTGGTTACGATGGGCGTGCCAACCTTGAAGCTATGCAGAATGAGAAGTGCACATTTGTCTATGGTACCCCGACCATGTACATAGATATGCTGGGTCAGCCCGACTTGGCCAAGTTTGACATATCGTCTGTTCAGACAGGAATTGTAGCTGGCTCTCCCTGCCCTCCTGAAGTAATGAGGAAAGTTATCAAAGTCATGGGCATAAAGGAACTTACAattggaTACGGCACCACTGAGAACAGTCCTGTGACTTTCTGTGGCTTCCCTGTTGACAACttggagagaaagacagagactgTTGGATGCATCGTCCCTCACACTGAGGCGAAGGTGGTCAACCCTACAACAGGATTTACTGTTCCTCTTGGAACTCAAGGAGAGCTGCTGATAAGAGGTTACTGCGTCATGCTGGAATACTGGCAAGATGAGGCTAAAACCAGAGAATGCTTCACTAAAGACCGCTGGTACAAAACTGGTGATATCGCCACTTTGGACGAGTTTGGTTACTGTAAAATTGTGGGCCGAATTAAAGACATGGTGATCCGTGGAGGAGAAAATATCTACCCTGCTGAAATTGAACAGTTCCTGCACACACATCCCAAAATCCAGGAAGCACAGGTGATTGGAGTGAAGGATGAAAGAATGGGTGAAGAGGTTTGTGCCTGCATCAAACTGAAGGCTGGGCAAGAATGTACTGCAGAGGAGATCAAGAACTACTGCAAAGGCCAGatttCCCATTACAAGATCCCTCGTTATATCACTTTTGTTGAGAGCTATCCTCTGACTGTCTCAGGAAagatccagaagcACAAACTGCGAGAGCAGACAGAGAAACAGCTGGGACTGTGAATGGAATACATGTCTGGTATTTCACttgtataaaaatacagaaataattgttgaatAAACTGTTGATGTTCTGCTTCATAATTCATGTATCTTAATTTCACTCTGTGTTATTCTTATtctaagtataaaagtacattattaaatgattttaaaaagtttaaagagcatcaaaataagattttttaattacattttagttaatctaaaaatgtttgtattttttgttcatAAGACAATTCAAAAAGCTAAACTgctatatattattttcattacacATAAGGTGATATATTTCAAgagggtgccagatggatgggacaaaCAAGTTCTGcatgcatttaacatttcttgatgCACAAGAACACACCTGGTACACACCTTGTCctgtgtgtaccaggaatacatcatagaacacattaccacccacagtggacaggcTAGAATTGAACATGCGGACAGATAAGCCACTTATTTGGCCTGTCAGTGAATAAAATATGACAGTTTAACTTTTTGAATTAAACTCTGAACACATTTTAAAGATGCTctaatgtactttttttatacCCTGTTGATGTCAACCTTGTGGATTTAATGCACATAATCAATGCAACATTTATCAGTGACAAGGAGTTTGCTTTCAACTGCTTGTGTTTttatatgataaatatataaaaatgtattgccttttttgccattttttaatccattacatgtataataaaatgtatacaaatataCACTCTTTTTATAGTAAGATCAAAAGACTACATTGTATTTATTGATGTGTGTAAGAAATGTCCGACAGTTCTGACTATCTGAAGGTAATGCTGTTTATCATCCATTCACACCTGTGTCACATCAGTTATGCTACATCTGATGTACATATGCTGGTGTGCTGCTGACATTTCTCTTATGTAACAAACAAAACCTCAAACCATGTGCCATGTTCCAACAATCAGTAGCCATGGACCTAAACAGCTGCCTAGACCTctgaacattaaaataaaagtgtatgtTTGTTAAAACGGCAAA

Function

symbol description
acsf2 Predicted to enable medium-chain fatty acid-CoA ligase activity. Predicted to be involved in fatty acid metabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in mitochondrion. Orthologous to human ACSF2 (acyl-CoA synthetase family member 2).

NR:

description
PREDICTED: acyl-CoA synthetase family member 2, mitochondrial-like isoform X2

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K23617 ACSF2; medium-chain acyl-CoA ligase, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259337.3 True 3129 mRNA 0.43 16 7078789 7112191

Neighbor

gene id symbol gene type direction distance location
LOC103036712 NA coding upstream 10261 7057908 ~ 7068528 (+)
slc16a5 NA coding upstream 22360 7043482 ~ 7056429 (+)
kctd2 kctd2,LOC108410512,LOC107666921,LOC107727321,LOC107582756 coding upstream 38104 7029131 ~ 7040685 (+)
LOC103033683 LOC108410508 coding upstream 50630 7021847 ~ 7028159 (+)
LOC103031986 ndst2b,LOC108410510,LOC108273828,LOC107755463,LOC107684097,LOC107749844 coding upstream 201756 6778202 ~ 6877033 (+)
LOC103039861 stxbp4 coding downstream 163556 7275747 ~ 7292804 (+)
LOC103040176 LOC108443565 coding downstream 194115 7306306 ~ 7335081 (+)
ankfn1 ankfn1,LOC107684130,LOC107702427 coding downstream 240895 7353086 ~ 7466457 (+)
nog nog coding downstream 360716 7472907 ~ 7475245 (+)
LOC103035888 LOC107566522,LOC108435270,LOC107755508,LOC107684054,LOC108273414 coding downstream 471636 7583827 ~ 8281690 (+)
G35096 NA non-coding upstream 1632 7076688 ~ 7077157 (+)
G35031 NA non-coding upstream 28160 6987832 ~ 7050629 (+)
G35037 NA non-coding upstream 57986 7017313 ~ 7020803 (+)
G35034 sec24c non-coding upstream 68872 7005776 ~ 7009917 (+)
G35012 NA non-coding upstream 136518 6809228 ~ 6942271 (+)
LOC111192361 NA non-coding downstream 3664 7115855 ~ 7119167 (+)
G35102 NA non-coding downstream 13763 7125954 ~ 7159316 (+)
LOC103039044 NA non-coding downstream 118062 7230253 ~ 7231321 (+)
G35143 NA non-coding downstream 121444 7233635 ~ 7233863 (+)
G35148 NA non-coding downstream 209729 7321920 ~ 7322957 (+)
G35021 NA other upstream 174792 6902417 ~ 6903997 (+)
G34931 NA other upstream 347365 6730954 ~ 6731424 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other upstream 415182 6592607 ~ 6663607 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other upstream 537329 6502145 ~ 6541460 (+)
LOC103045604 LOC108426437,LOC107683136 other upstream 820739 6246646 ~ 6258050 (+)
fasn fasn other downstream 1273982 8386173 ~ 8438865 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other downstream 1329941 8442132 ~ 8472989 (+)
LOC103024481 adamts14,LOC103367006 other downstream 1607163 8719354 ~ 8851392 (+)
G35744 mrpl38 other downstream 3359189 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 3635446 10747637 ~ 11001805 (+)

Expression


Co-expression Network