LOC103040176 (LOC108443565)


Basic Information

Item Value
gene id LOC103040176
gene name LOC108443565
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7306306 ~ 7335081 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259343.3
CCTTTCTTTCTCAACTTGTGTCACATTTGATTTCGTCTTTATTCGTTTTATTTTTCGCTTACGACACAAAAAAGAACAAGATGTCCAGAAATCTGACGATGAACCCAACTTTTGTACCGCTCCAAACTCACGGCGTACTGAAATCGCTGCTGGAAAACCCGATGAAGCTGCCGCTGCACCACGACGACGTTTTTGGCAAAGACAGAGCAGAGGAGAAGAAGTTGGACGAGGACCGGAATGTGCCGCAGTCCGCTTTCCTGGGCCCAACCCTCTGGGATAAAACTCTGCCTTACGATGGGGATAATTTCCAGTTGGAGTACATGAACCTGGAAGAGTTCCTCTCTGAAAATGGCATCCCTTCCAGTCCATCGCAGCTCGACCAAAgccaccatcaccaccaacaccacccccagcagcagcagcaacaccaGCCCCATCAGCCACAGCAGCCGCAGGCACAGCAGCAGCCATGCCTGCAGCAGGCCTCAGTATCAGTCATGGACCTCAGCAACAGAGCCACCACGTCCATCCACACAAGCATGATCCCTCAGACCTGCATGCAGACCCCCAGCAGATCAGtGTTGCCTCCAGCACGTAACACTCCCAGTCCTATTGATCCAGAAACCATCCAAGTGCCAGTGAGCTATGAGCTCCACCCTTCAGACCTGGCCCTGTCCAGTGTTCCCGGGCAGGAGACCTTTGACCCTCGTAAGCATAAATTCTCTGAGGATGAGCTTAAGCCCCAACCCATGATCAAGAAGGCCCGGAAAGTCTTCATTCCTGAGGACCTGAAGCAGGATGACAAATACTGGGCACGCCGCAAAAAGAACAACATGGCTGCCAAGCGCTCGCGGGACGCCCGGCGCCTCAAGGAGAACCAGATTGCCATCAGAGCCGGCTTCCTGGAGAAAGAGAACTCCGCTCTCCGACAGGAAGTGTCTGACCTGCGGAAAGAGCTGGGCCGCTGTAAAAATATCATAGGAAAGTATGAAGCTCAGCACGGCCCCCTGTGAGGCCGTGGTCCCTGGGGGCCGTCGGGCCTGTGCGGTTTGAAGAACAATGTAATGGAGTAAGATCCATTCAGCATCTGCTCCAGCCAACATTCACCTCAGTCTGTTCTTGGCACTTTAGAAAAGGCAGAGTACATTTGGTGTATAGTCATGTGTATATTCCATATTTCTTGTCCGTGTTCTATCATAGTAGTTGGAAGCTACCaggaatgttttatttttcctttttctcattATTGTACATACaacttgagtttttttttcttattgtagcaTTTTGTCCTACATTTGTATAAGATAAAATGCCTTTTATGCTCTGTCTTAACAGCTACATTGTTACATAGTTTTAATGATAAAATTTATAATCAAATTTGTAACAACTCTACATCTAGAAGAGTTGTCCCTCCAGCATGTCCATGTCCAGTGAGAATGGTACATGTGGTGCATAAGCACAGCTAAAGTGGTGGAGAGACCTCAGGATAGGTTTTATTGTCTCTTTAAGGCCTAATATTCATGCAGAGGATTGAATGTAGCAAGGTTAAAATATGTGATggatttatagtgtttatattacCAACATAATATacatcaaatatataaatataaatataaaatgttttactaagATGTCTGATTGTAGTTGTCATTATACAATGCACATTGTAAGATCTGGCTAGACTGTCTTTTTTGCAGCTTCCAGCGTACTGCTGAAGTCACGGTTGAGTACAAAATTTTAGACATTATTTTATTCCTAATGTAATCTGAATTACATCGTCTGGctgacttttttattattcctgTTTTAACCCAATCAGTGTACACTGATTTATACCTCCAAAAAAGCCATATTTAATTTCCCCCTCCTTGTCAAGCCGGATTATTATACCACACCTGTGGCAATAATTTCATTGGATGCTATGCTAAACATGTACAGGACATGTGATGTTAAAGAATTTTCATTTGggatgttttgtttgttaaaatAATGATCAAGTATTTTTTAGCACTGGCCATTtccaaaaattggaaataaatattttggacAGACTTGATCAAACAAGTTACTGGTTGCCTTTTTCAACCGATGTGAGATGAATGTATATGTAGGGTGTATTTTGTGTCTCTGTGAATAAACCTATCACTCTCTGTTTCAGACCAAaagatatatattataatatattgttatattaaattAGATGTTTTTACAAAgctattcttgtttttttgtacagtatttTCCTATGAATTTCTGAGAATATGTTTTAAGAGGTGTTTGACTACATGGAAAACATTCCAAAATCTCAAGTGTAATGCTCTAATTTTGCTGGAATTGTGCATGGGCATTATTATACAATAATCCAAAagattaatttaacattttcaaCACTTTCTTTATTGAACATCCATGTGTTGTCACCCAGCCATGCCCTCTGAAACTCTGTGTGGGCTGAAGGGTGTATATGtttctgtttccttttttttgtcagGTAGATTTACCCAATCTGCCCTGTTTCTTGCTGTTTTAATTCTTCTGAGAGATGGTATTATCGTGTTTGCCATACTTGGTGAAATTTGTGAATGTTGGCAGTGAAGGTTTAATACATGTCATACAGCActtattattttctaaattaCAGCATGTTTAATTGTAGTAGAACGTTCTGATTATTTAttggctttttaaaataatattttgttgtctgtgttttttcccTTGTTTTTTTGCTCATGACCaaaaataaatggttta
>XM_007259344.3
CCTTTCTTTCTCAACTTGTGTCACATTTGATTTCGTCTTTATTCGTTTTATTTTTCGCTTACGACACAAAAAAGAACAAGATGTCCAGAAATCTGACGATGAACCCAACTTTTGTACCGCTCCAAACTCACGGCGTACTGAAATCGCTGCTGGAAAACCCGATGAAGCTGCCGCTGCACCACGACGACGTTTTTGGCAAAGACAGAGCAGAGGAGAAGAAGTTGGACGAGGACCGGAATGTGCCGCAGTCCGCTTTCCTGGGCCCAACCCTCTGGGATAAAACTCTGCCTTACGATGGGGATAATTTCCAGTTGGAGTACATGAACCTGGAAGAGTTCCTCTCTGAAAATGGCATCCCTTCCAGTCCATCGCAGCTCGACCAAAgccaccatcaccaccaacaccacccccagcagcagcagcaacaccaGCCCCATCAGCCACAGCAGCCGCAGGCACAGCAGCAGCCATGCCTGCAGCAGGCCTCAGTATCAGTCATGGACCTCAGCAACAGAGCCACCACGTCCATCCACACAAGCATGATCCCTCAGACCTGCATGCAGACCCCCAGCAGATCAGtGTTGCCTCCAGCACGTAACACTCCCAGTCCTATTGATCCAGAAACCATCCAAGTGCCAGTGAGCTATGAGCTCCACCCTTCAGACCTGGCCCTGTCCAGTGTTCCCGGGCAGGAGACCTTTGACCCTCGTAAGCATAAATTCTCTGAGGATGAGCTTAAGCCCCAACCCATGATCAAGAAGGCCCGGAAAGTCTTCATTCCTGAGGACCTGAAGGATGACAAATACTGGGCACGCCGCAAAAAGAACAACATGGCTGCCAAGCGCTCGCGGGACGCCCGGCGCCTCAAGGAGAACCAGATTGCCATCAGAGCCGGCTTCCTGGAGAAAGAGAACTCCGCTCTCCGACAGGAAGTGTCTGACCTGCGGAAAGAGCTGGGCCGCTGTAAAAATATCATAGGAAAGTATGAAGCTCAGCACGGCCCCCTGTGAGGCCGTGGTCCCTGGGGGCCGTCGGGCCTGTGCGGTTTGAAGAACAATGTAATGGAGTAAGATCCATTCAGCATCTGCTCCAGCCAACATTCACCTCAGTCTGTTCTTGGCACTTTAGAAAAGGCAGAGTACATTTGGTGTATAGTCATGTGTATATTCCATATTTCTTGTCCGTGTTCTATCATAGTAGTTGGAAGCTACCaggaatgttttatttttcctttttctcattATTGTACATACaacttgagtttttttttcttattgtagcaTTTTGTCCTACATTTGTATAAGATAAAATGCCTTTTATGCTCTGTCTTAACAGCTACATTGTTACATAGTTTTAATGATAAAATTTATAATCAAATTTGTAACAACTCTACATCTAGAAGAGTTGTCCCTCCAGCATGTCCATGTCCAGTGAGAATGGTACATGTGGTGCATAAGCACAGCTAAAGTGGTGGAGAGACCTCAGGATAGGTTTTATTGTCTCTTTAAGGCCTAATATTCATGCAGAGGATTGAATGTAGCAAGGTTAAAATATGTGATggatttatagtgtttatattacCAACATAATATacatcaaatatataaatataaatataaaatgttttactaagATGTCTGATTGTAGTTGTCATTATACAATGCACATTGTAAGATCTGGCTAGACTGTCTTTTTTGCAGCTTCCAGCGTACTGCTGAAGTCACGGTTGAGTACAAAATTTTAGACATTATTTTATTCCTAATGTAATCTGAATTACATCGTCTGGctgacttttttattattcctgTTTTAACCCAATCAGTGTACACTGATTTATACCTCCAAAAAAGCCATATTTAATTTCCCCCTCCTTGTCAAGCCGGATTATTATACCACACCTGTGGCAATAATTTCATTGGATGCTATGCTAAACATGTACAGGACATGTGATGTTAAAGAATTTTCATTTGggatgttttgtttgttaaaatAATGATCAAGTATTTTTTAGCACTGGCCATTtccaaaaattggaaataaatattttggacAGACTTGATCAAACAAGTTACTGGTTGCCTTTTTCAACCGATGTGAGATGAATGTATATGTAGGGTGTATTTTGTGTCTCTGTGAATAAACCTATCACTCTCTGTTTCAGACCAAaagatatatattataatatattgttatattaaattAGATGTTTTTACAAAgctattcttgtttttttgtacagtatttTCCTATGAATTTCTGAGAATATGTTTTAAGAGGTGTTTGACTACATGGAAAACATTCCAAAATCTCAAGTGTAATGCTCTAATTTTGCTGGAATTGTGCATGGGCATTATTATACAATAATCCAAAagattaatttaacattttcaaCACTTTCTTTATTGAACATCCATGTGTTGTCACCCAGCCATGCCCTCTGAAACTCTGTGTGGGCTGAAGGGTGTATATGtttctgtttccttttttttgtcagGTAGATTTACCCAATCTGCCCTGTTTCTTGCTGTTTTAATTCTTCTGAGAGATGGTATTATCGTGTTTGCCATACTTGGTGAAATTTGTGAATGTTGGCAGTGAAGGTTTAATACATGTCATACAGCActtattattttctaaattaCAGCATGTTTAATTGTAGTAGAACGTTCTGATTATTTAttggctttttaaaataatattttgttgtctgtgttttttcccTTGTTTTTTTGCTCATGACCaaaaataaatggttta

Function

NR:

description
PREDICTED: hepatic leukemia factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259343.3 True 2760 mRNA 0.41 6 7306306 7335081
XM_007259344.3 False 2757 mRNA 0.41 6 7306306 7335081

Neighbor

gene id symbol gene type direction distance location
LOC103039861 stxbp4 coding upstream 13502 7275747 ~ 7292804 (+)
acsf2 acsf2 coding upstream 194115 7078789 ~ 7112191 (+)
LOC103036712 NA coding upstream 237778 7057908 ~ 7068528 (+)
slc16a5 NA coding upstream 249877 7043482 ~ 7056429 (+)
kctd2 kctd2,LOC108410512,LOC107666921,LOC107727321,LOC107582756 coding upstream 265621 7029131 ~ 7040685 (+)
ankfn1 ankfn1,LOC107684130,LOC107702427 coding downstream 18005 7353086 ~ 7466457 (+)
nog nog coding downstream 137826 7472907 ~ 7475245 (+)
LOC103035888 LOC107566522,LOC108435270,LOC107755508,LOC107684054,LOC108273414 coding downstream 248746 7583827 ~ 8281690 (+)
LOC103030301 csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC107755503,LOC103369437 coding downstream 1012522 8347603 ~ 8360253 (+)
ccdc57 ccdc57 coding downstream 1026418 8361499 ~ 8401643 (+)
G35143 NA non-coding upstream 72443 7233635 ~ 7233863 (+)
LOC103039044 NA non-coding upstream 74985 7230253 ~ 7231321 (+)
G35102 NA non-coding upstream 146990 7125954 ~ 7159316 (+)
LOC111192361 NA non-coding upstream 187139 7115855 ~ 7119167 (+)
G35096 NA non-coding upstream 229149 7076688 ~ 7077157 (+)
G35244 NA non-coding downstream 773079 8108160 ~ 8108470 (+)
G35299 NA non-coding downstream 1071770 8406851 ~ 8407393 (+)
G35300 NA non-coding downstream 1072399 8407480 ~ 8408610 (+)
LOC111192363 NA non-coding downstream 1139159 8474240 ~ 8491226 (+)
G35359 NA non-coding downstream 1217329 8552410 ~ 8552834 (+)
G35021 NA other upstream 402309 6902417 ~ 6903997 (+)
G34931 NA other upstream 574882 6730954 ~ 6731424 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other upstream 642699 6592607 ~ 6663607 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other upstream 764846 6502145 ~ 6541460 (+)
LOC103045604 LOC108426437,LOC107683136 other upstream 1048256 6246646 ~ 6258050 (+)
fasn fasn other downstream 1051092 8386173 ~ 8438865 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other downstream 1107051 8442132 ~ 8472989 (+)
LOC103024481 adamts14,LOC103367006 other downstream 1384273 8719354 ~ 8851392 (+)
G35744 mrpl38 other downstream 3136299 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 3412556 10747637 ~ 11001805 (+)

Expression


Co-expression Network