nog (nog)


Basic Information

Item Value
gene id nog
gene name nog
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7472907 ~ 7475245 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259346.3
GATAAATCAGACGGAGCGGCGCGCTCTCTCACACTTTTGGCTGGAGAGCGCGAGactacagacagagagagagcatgcagAGCGTTGGGCGCCcgcgcgcgcgcgcgcactcaacagcaacagcagcaccAACAGTAGGAGCAACTACAGCATCAGCCGCCGCCGTTGCCGCGAGGCCCCGAGCGTGATCGCTAGCTCGTGCGCGCGCTTCACCGTTCCGGTCCAGAGgcctgtctgcctgcctgcTCCGGTACTGCTGCCATGCCGCTCGCGCTCCTCCTCTTCGAACCCCCCTTTATCTTCATCTTCTTCAGCAGCATCACTCGGCCTCGATTAGGAGCTCAGCAGCGCCTGGCTGCTGCACGACCCGCGGGAGAGGGAGCCCCCTGGAGCCCCCCGAGCTATAGCGCCCCTGAGAGCCTCTGAGAGCGCGCTGGAGGATTAAGCTCTCACATTACTACTCTCTGCATATAgaaagacacacaaacacacacacacacacacactgaaagaaagaaaaacaaccagaagaaagaaaagtgcAGGATGGATGCCGCCCCCCACTTTCTGTCCCTGTGCGTGCTGCTGTTCTCTCTCGGCGCGCGGATAGAGGAGGGCGCGTGCCAGCACTACTACCTCCTCCGCCCCGTCCCCAGCGACAGCCTGCCCGTGATGGACCTCCTAGAGGACCCCGACCCCGCCCTGGACCCTAAGGACAGGGACCTGAACGAGACGGAGCTGCGCGCGCGACTGGGCGCGCACTTCGACGCGCACTTCATGGCCGTGTCCGCGCCCGGCGCCGCCGGCGGGGAGGACGCGGAGACGGCTGCCGGGGCTGCTGCGTCTGCGGCGGCCGGGGGAGATACGGACGCGTCCCGCCTGCGACCCCCCGGCCCCATGCCCCGGGACATCCGGACTCTGGACTTTGAGCTGCCCGGCTGGAAAAAGCCGAGCAAGAAGATGCGCAGGCGCCTGCAGCTCTGGCTGTGGTCCTACACCTTCTGTCCGGTGGTCTACGCGTGGCAGGACTTGGGCAGCCGCTTCTGGCCGCGTTACGTCAAGGTGGGCAGCTGCGCGAGCAAGAGGTCGTGCTCTGTGCCCGAGGGCATGGTGTGCAGCCCGGCCAAGTCCGCGCACTTAACTCTGCTGCGGTGGTACTGCATCCCGCGCAAGGCGGGGGGGCTGCGGTGCTTGTGGATCCCCGTGCAGTATCCCGTCATCTCGGAGTGCAAGTGCGCCTGCAGCACATGAGGACCTGGAGAGTGGGGTTGCAGCGGTATACCGGTGTTAGCTTTACCGCGGTATGAAGATGGACGGTTATGATACTGATGTGTACATTTTGCTTATTGCAAAAATTGTGGGGATAAAACGGACAGAACAAAGAATCCCACAAATTTGCTGCTGTTTCagagtaaaaaaacatataaaaaagaaacaatgaattaaTCAAGAAGCAGATTAATCTATAACGATTTGACAGAGCTTCACCTCAGGTGAAACattcttatttaattattttcaaaaGGGAGATAACTTACATAATACTTATATTAATAAAGTGCATCAaaattttagcctttttttttattcaacacaaacatgctctgttttcatttctttaaggctcaatttacaataataataataattaaaacaatgcaaacaaaaaaagaacaagaagaaaagTGATGAAATGCTGTATACTGTGATCCCATGAACCATGATATTTTTGTAACGGTCATCATACCATAAAAATACCATGCCGTTGCAACCCTACTAAAGAGGCATTCAAAAGCTACTCAaactcatttctctctctctctctctctctctctctctctctctctctctctatctatctctcacacacacacatgcactgtcCTGTCCGGTGTAGGAATGTAAATGCTATGTATATGTGGtgtcttttataatttttattcttattattattatattattattttttataactcGTACAGAGGTCAGTATTACGTATATCCAGCGTCTACTGTATTTGCTGAGCATACTTTGGTTGTAATGTATTTATGGTGAGAACATTTCGCATTAAAGTGCGTTTATTTGAAGGAATTCCAAGCTTTTTCCATTATtcggaaaaaaatgagaaactatatatattatctgACTTTTATAGACCTCAAATGAAATAAAGCTATAGATTACAGTGTCAGTTTGCAGCTTGCTGTGctgtgaatggaaaaaaaaacggggcaaTGGAGTTAACTCATGAATCATCCTGTAAATTAAGAGAAacgtttatttattctttatttccaTGTAGTCTAAAGTCATTTGAAATAAAACCACTAAAAGGGCAA

Function

symbol description
nog Enables cytokine binding activity and protein homodimerization activity. Involved in several processes, including embryonic morphogenesis; regionalization; and regulation of signal transduction. Located in extracellular space. Implicated in Huntington's disease; cleft lip; dysostosis (multiple); hyperopia; and proximal symphalangism (multiple). Biomarker of relapsing-remitting multiple sclerosis.

NR:

description
noggin

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0048793 pronephros development biological_process
GO:0035844 cloaca development biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0007368 determination of left/right symmetry biological_process

KEGG:

id description
K04658 NOG; noggin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259346.3 True 2339 mRNA 0.50 1 7472907 7475245

Neighbor

gene id symbol gene type direction distance location
ankfn1 ankfn1,LOC107684130,LOC107702427 coding upstream 6450 7353086 ~ 7466457 (+)
LOC103040176 LOC108443565 coding upstream 137826 7306306 ~ 7335081 (+)
LOC103039861 stxbp4 coding upstream 180103 7275747 ~ 7292804 (+)
acsf2 acsf2 coding upstream 360716 7078789 ~ 7112191 (+)
LOC103036712 NA coding upstream 404379 7057908 ~ 7068528 (+)
LOC103035888 LOC107566522,LOC108435270,LOC107755508,LOC107684054,LOC108273414 coding downstream 108582 7583827 ~ 8281690 (+)
LOC103030301 csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC107755503,LOC103369437 coding downstream 872358 8347603 ~ 8360253 (+)
ccdc57 ccdc57 coding downstream 886254 8361499 ~ 8401643 (+)
LOC103030936 bambi,bambia,LOC107749375,LOC107676764,LOC107584374,LOC108274338,LOC107549411 coding downstream 1007626 8482871 ~ 8487451 (+)
pald1 pald1 coding downstream 1123937 8599182 ~ 8703597 (+)
G35148 NA non-coding upstream 149950 7321920 ~ 7322957 (+)
G35143 NA non-coding upstream 239044 7233635 ~ 7233863 (+)
LOC103039044 NA non-coding upstream 241586 7230253 ~ 7231321 (+)
G35102 NA non-coding upstream 313591 7125954 ~ 7159316 (+)
LOC111192361 NA non-coding upstream 353740 7115855 ~ 7119167 (+)
G35244 NA non-coding downstream 632915 8108160 ~ 8108470 (+)
G35299 NA non-coding downstream 931606 8406851 ~ 8407393 (+)
G35300 NA non-coding downstream 932235 8407480 ~ 8408610 (+)
LOC111192363 NA non-coding downstream 998995 8474240 ~ 8491226 (+)
G35359 NA non-coding downstream 1077165 8552410 ~ 8552834 (+)
G35021 NA other upstream 568910 6902417 ~ 6903997 (+)
G34931 NA other upstream 741483 6730954 ~ 6731424 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other upstream 809300 6592607 ~ 6663607 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other upstream 931447 6502145 ~ 6541460 (+)
LOC103045604 LOC108426437,LOC107683136 other upstream 1214857 6246646 ~ 6258050 (+)
fasn fasn other downstream 910928 8386173 ~ 8438865 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other downstream 966887 8442132 ~ 8472989 (+)
LOC103024481 adamts14,LOC103367006 other downstream 1244109 8719354 ~ 8851392 (+)
G35744 mrpl38 other downstream 2996135 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 3272392 10747637 ~ 11001805 (+)

Expression


Co-expression Network