LOC103030301 (csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC107755503,LOC103369437)


Basic Information

Item Value
gene id LOC103030301
gene name csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC107755503,LOC103369437
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8347603 ~ 8360253 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259648.2
TGCTGGAGTCTGAAGGTAGAAGAAGGCCTATGACAGCTGGGGATCAGGATCGGAGAGAGGGGGTCGAGCCAGAAAATCCACTCCCATCTTCATGAAAACGGGACAAAATGTTCATTAAACCTATAGGAGCATAATATACAGACTCTGCGCTTTATTTTAAGCCTAATATTGTGGTGTTTTAGTCACGGATACATTAGAAAAGGAATGGTGAAATCTGAACTGCGCCGGAAGGATCCGAATTTTCCTCAGGGATTCGGGGGGGTTGGAGTAGCGTAGGGTCTGAAAGATCGTAGAAAGCTTCTGGTTAGGCTGAGTGGTTTTGTTTCGTTAGGGTACaggtttttaaatttgagcGTTAAGTTAATTTCTGGGTAATTGAAAAAGCTGTACATAGCTGCTAGCTAGTGGATAGCTAGGTGTCATCAGAGAAATGGAGCTCCGAGTGGGAAACAGATACAGACTGGGCAGGAAAATTGGAAGTGGATCTTTTGGTGACATCTATTTGGGCACGGACATTTCTGTTGGGGAGGAAGTCGCCATTAAGCTGGAATGTGTGAAGACGAAGCATCCTCAGCTTCACATAGAAAGCAAGATCTACAAGATGATGCAGGGAGGAGttggTATCCCAACAATAAAGTGGTGTGGTGCAGAGGGGGACTACAATGTGATGGTGATGGAGCTTCTGGGACCCAGTCTGGAAGACCTCTTCAACTTCTGCTCGAGGAAATTCAGCCTTAAGACTGTTTTACTGTTAGCTGACCAGATGATCAGCCGTATAGAGTACATCCACTCCAAGAACTTCATCCACAGAGACGTGAAGCCTGACAACTTCTTAATGGGGCTGGGGAAGAAGGGCAACCTAGTCTATATCATTGACTTTGGTTTGGCCAAGAAGTACCGTGATGCCCGCACCCACCAGCACATTCCGTATAGAGAGAACAAAAACCTGACTGGCACTGCTCGCTATGCCTCTATCAACACTCACCTGGGCATAGaGCAGTCCCGGCGTGACGACCTGGAGTCTTTGGGCTATGTGCTAATGTATTTTAACCTGGGCTCACTGCCATGGCAGGGTCTGAAAGCTGCCACCAAGAGACAAAAATACGAACGCATCAGCGAGAAGAAAATGTCTACTCCTATTGAAGTTCTTTGCAAGGGCTACCCATCTGAATTTGCCACATACCTCAACTTCTGCCGCTCACTGCGATTTGATGACAAGCCTGACTACTCGTACCTGAGGCAGCTCTTCAGGAATCTGTTCCACAGACAGGGTTTCTCATACGACTATGTGTTTGATTGGAACATGCTTAAGTTTGGTGCTAACCGTGCAGCAGAGGAGgctgaaagagagaggagagaccgGGAGGAAAGGTTGAGGCACAGCAGGAATCCAGCCCCTAGAGGCATTCCATCAGCCTCAGGCAGACCCCGAGCCACACAGGATGGTGCACCCCCAACGCCCCTTACTCCAACCTcacacacagCAAACACATCCTCACCGCGACCTGTAACCGGCATGGAGAGGGAGCGGAAAGTCAGCATGCGGCTTCACCGCGGGGCCCCAGTTAATGTGTCCTCTTCTGACCTGACCGGCCGACAAGACACCTCCCGCATGTCCACGTCACAGAATAGCATTCCCTTCGATCATCACGGCAAGTAGCTGCTCGCAATGTGCTTGTGTGATGGCAGCAGCACCTGATTCACTCTTCATGTCCCAGAAGCCTCCACTCTGCAATACGGAGTGCAGTGGTCAACCCATCTGTACGCGGCTGATTGATGGCTCTGCTGTTCAAAAGCGGATAAGCAGGGCTATCAGTCTCTCTTCAATCGACATAACCAAAATGGTTCAGAACCAACTTGACctctttaaaggtctccttgcactctctctcttctcttctcttctcctgtctttgctctctctgtttTCACTCTGGTAAATACactatgtacacacacacacacacacagatttgtgATCACTTCTATCAAAGGAAATGTTTATAGACAGACCCAGCAGAGACTGCATCAGCCAGCCAAACTCCAGTGTCCTCTACACTGTTGTCTTTCTTCATACTAGTATGTTGTCTGTACATCTGCACTGCTTTTCATAACCTTTTCCGTCCATTACGTGTTTTAAGGGTTTTTCCCTAAGCTAATGTATTTAACTTGTTTAACTGATTCCTTTTtgttgtactgtattttttaagctTTCCCATTTCAAAGTTCCTTTCTTATAACATGTTCCATATCTGGGCTTGTTATAATTTTATCTGaccaattataattattttattatattttgatagCCCTTTCTATAACTGGTGGGTGGTATAAAATGGGTTCCTATTGCATGGTCTTACTGGTGTTTTCGTATGGACAGACCGCTAAGGGGCCAAAATCTCACTGTTTCTTAGTTATGAAACTAATCCGTCACTGCATCATGTGTTCTGCAGGACCATGTGAAGCTCACCATCCTGTCTAGCTTTCTTAACTGCTGTATATTACTGCCTCTCCCTTATTGTATCACTTTTTTCTATTTCCAAGCTGTGAAAATTGTAATATATCcatgtaaatgtttttcattttcactTAATAGAGACTATGAACTAGCCACAAATCACAAACTGTCCTGGAGCATTAGGGGTTTTCTTATTTTGCACAATGCCAATAAAATAAAGTGCTGGACATCAGAAGGATTGCCAAGTATAAATCTAAAGCCTGATTTTAAAACTTGAAAGGAGCATATTGGAGGTTTCAGAAGGGCAGGGGAAGGAACATGCAAGTTTCAGCTTGATTGTTTGTAGATGCTTGTTTGACTAAAGTCAACCCATGCTGAGGTTGTATTTAGTGAGATGATGCTGCCTCAAAGCAGTCCAGCAGTGTGAAAGGTGAGGAGGGAATCCTGTCTAAAGAATGTTCCAGCACTGATGTGGCTCAACAGATGTACCCAAAAGGTAATTCTGGGTTCTATGCATCAAGCTTCTCAGGGAAAGTGTTCTGATCTGAGCTGCTCTTATTGTTTCGCCACTTTGACATCCTAATTAATAACGGTGGATTGGAGGGAGCTGCTTTTTGATCAGTGTCCTTGCATTGAGATGTCTGATGCGTATGGGCCTTGCTCATACTTCCTTCTAATGTACCCGTTACATCTGAAGAGAGCAGATGTCTCAGGCCGGAATCGGTGAATAGCGTCACGCAGGTCTTTGAAGCCCATGGCCATTTTGGGCTCCACACTATTGGTCTTGTGAAGTCATGCCAATCTATGAGCTCTACTAGAATTTGTATCACTGTATTTGTGCACCTTTTTGTGTAcatgtgtaaataaatgaaatacttGTATTAA

Function

symbol description
csnk1db Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including organelle assembly; positive regulation of canonical Wnt signaling pathway; and positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within Wnt signaling pathway and protein phosphorylation. Predicted to be active in cytoplasm; nucleus; and spindle microtubule. Is expressed in several structures, including axis; brain; notochord; presumptive neural retina; and yolk syncytial layer. Human ortholog(s) of this gene implicated in advanced sleep phase syndrome 2. Orthologous to human CSNK1D (casein kinase 1 delta).

NR:

description
casein kinase I

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08959 CSNK1D; casein kinase 1, delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259648.2 True 3346 mRNA 0.45 10 8347603 8360253

Neighbor

gene id symbol gene type direction distance location
LOC103035888 LOC107566522,LOC108435270,LOC107755508,LOC107684054,LOC108273414 coding upstream 65913 7583827 ~ 8281690 (+)
nog nog coding upstream 872358 7472907 ~ 7475245 (+)
ankfn1 ankfn1,LOC107684130,LOC107702427 coding upstream 881146 7353086 ~ 7466457 (+)
LOC103040176 LOC108443565 coding upstream 1012522 7306306 ~ 7335081 (+)
LOC103039861 stxbp4 coding upstream 1054799 7275747 ~ 7292804 (+)
ccdc57 ccdc57 coding downstream 1246 8361499 ~ 8401643 (+)
LOC103030936 bambi,bambia,LOC107749375,LOC107676764,LOC107584374,LOC108274338,LOC107549411 coding downstream 122618 8482871 ~ 8487451 (+)
pald1 pald1 coding downstream 238929 8599182 ~ 8703597 (+)
LOC103023541 LOC108441018,LOC107709014,LOC107595168 coding downstream 634190 8994443 ~ 9029155 (+)
LOC103022911 LOC108413183 coding downstream 816985 9177238 ~ 9207684 (+)
G35244 NA non-coding upstream 239133 8108160 ~ 8108470 (+)
G35148 NA non-coding upstream 1024646 7321920 ~ 7322957 (+)
G35143 NA non-coding upstream 1113740 7233635 ~ 7233863 (+)
LOC103039044 NA non-coding upstream 1116282 7230253 ~ 7231321 (+)
G35102 NA non-coding upstream 1188287 7125954 ~ 7159316 (+)
G35299 NA non-coding downstream 46598 8406851 ~ 8407393 (+)
G35300 NA non-coding downstream 47227 8407480 ~ 8408610 (+)
LOC111192363 NA non-coding downstream 113987 8474240 ~ 8491226 (+)
G35359 NA non-coding downstream 192157 8552410 ~ 8552834 (+)
G35361 NA non-coding downstream 196983 8557236 ~ 8560349 (+)
G35021 NA other upstream 1443606 6902417 ~ 6903997 (+)
G34931 NA other upstream 1616179 6730954 ~ 6731424 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other upstream 1683996 6592607 ~ 6663607 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other upstream 1806143 6502145 ~ 6541460 (+)
LOC103045604 LOC108426437,LOC107683136 other upstream 2089553 6246646 ~ 6258050 (+)
fasn fasn other downstream 25920 8386173 ~ 8438865 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other downstream 81879 8442132 ~ 8472989 (+)
LOC103024481 adamts14,LOC103367006 other downstream 359101 8719354 ~ 8851392 (+)
G35744 mrpl38 other downstream 2111127 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 2387384 10747637 ~ 11001805 (+)

Expression


Co-expression Network