LOC103030936 (bambi,bambia,LOC107749375,LOC107676764,LOC107584374,LOC108274338,LOC107549411)


Basic Information

Item Value
gene id LOC103030936
gene name bambi,bambia,LOC107749375,LOC107676764,LOC107584374,LOC108274338,LOC107549411
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8482871 ~ 8487451 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259650.3
TGGCCTGGCGCTGCTGGATTTGACTATTCAGAGCCGTACTGTGAGCTGTACTGTGGAGCCGAGGTCGCTCTTGGATTAAATATCGTCTTTTTCGTGCTTTTCCCGTtgtttaagtgttcagaaacgttctttaacattgtgaaaGTTTCTGCCGTTACGTGTTACGGACTAGTTTTGCGTCGTTGTGGCGTGGTTTCCGAATATAGTCGTATTTCTTCGCTAAAGAACTGGACTGATCTGCTCCGCTCTGCTGTACTGTATGGATCCGCGGAGAGAGCCGCTGCTGGAGGAGCTCTTCTGAGTGTGCGGTCTCCGTTTGGACGCTATGTGAGCCGCGGATCTAAGGGAATGCAGTGATGTGTGGGCTTTAAGGCACATGTAAAGAGCAGGTCTTCACCACAAACCGATTTGGAGGGTCTTGCCGCGGGCTTGAAGGGCTGGGAAGAGTCGCCGTTGCTCAATGGATCGCCATTCCAGCCTGGTTTCGCTTTGGTTTCAGCTGGAGCTGTGTGCCATGGCCATTCTCCTCACTAAAGgaGAGATCAGGTGCTACTGTGATGCGCCGCACTGCGTTGCCACAGGATACATGTGCAAGTCGGAGCTTAATGCTTGTTTCACCAAGGTGTTGGACCCACTTAATACGAACTCCCCGTTAACACACGGGTGTATAGATCCTGTATTAAACTCAGTGGATGTGTGCCCCAAGAAGAACACAGAGACTTTAAATGGAGGCTCATCTCCCATTGAGTGCTGTCACGATGATATGTGCAACTACCGGGGATTACCTGACATTGCACACACTCGGAGCGACTCCACAGacCGATACCAGCCAGACGGCTCCAATCAGAACCTGATCACGCGGGTTCAGGAGTTAGCCTCGGCTAAAGAGGTGTGGTTTCGTGCTGCGGTGATCGCCGTGCCCATCGCAGGAGGCCTCATCCTGGTGCTGCTGATCATGTTGGCACTGCGGATGCTGCGCAGCGAGAACAAGCGCCTGCGAGTCCAGAGGCAACAGATGCTCTCCCGCCTGCACTACAGCTTCCACGGGCACCACCACGCCAAGAAGGGCCATGTGGCCAAGCTGGACCTGGAGTGCATGGTTCCTGTGACAGGACATGAGAACTGCTGCCTGGGCTGTGATAAGCTGAGGCAGGCCGAGCTGAGCCTGGCAGGGGGCGGCAGCGGAGGAGGGgagcgctttctctcactcgttcACTGGGGGATGTACACGGGCCACGGCAAGCTGGAGTTTGTATGACTACTTCTCGGTGCCTCCACTGTTGCAGCTGGACTCTAAGGAGGGGAAACTGAGGACGCTGCTTATGCTTGAACTGCATAGCGTTGTTTGTTgaacttttgttattattattattatttttatttgcccCTATGCCTTTGTAATTTTATTGCCCCTTCTTTGTAAATGGAGagaatggaaatggaaaattGAAAAGGACACCtatgtgttgttttgtttcagttttttttttattattattcctcaATGGAGCACTTTACTTGAATCTTGAATTAGAAATGTGGGAGGGAGGGCGCAGTTGCTGAAAgttaagccccgcccctctccaAGGCTTGTCCTGTGGATCCTGGACTGACACTGAAGACTGAAGGATTCGTAATGTCCGTcttatttgcacatttgtatAAAAATGACGAGATGAAaatactttctttctctctctctttttttgcctttaaaaaaagctgATTTAGAAGAAGTTCACTGACACCAGGGTACAAATatggacattttttatttcagtcatctTCTATAAATAAAGAACTCAGTGTTGACTGTAAAAGTTTAAA

Function

symbol description
bambia Predicted to enable frizzled binding activity. Acts upstream of or within dorsal/ventral pattern formation; negative regulation of BMP signaling pathway; and platelet activation. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; digestive system; germ ring; optic cup; and pectoral fin bud. Human ortholog(s) of this gene implicated in colorectal cancer. Orthologous to human BAMBI (BMP and activin membrane bound inhibitor).
bambi Enables frizzled binding activity. Involved in several processes, including positive regulation of epithelial to mesenchymal transition; regulation of cell shape; and regulation of signal transduction. Acts upstream of or within negative regulation of BMP signaling pathway. Located in cytoplasm and plasma membrane. Implicated in colorectal cancer. Biomarker of aortic valve stenosis; gastrointestinal system cancer (multiple); lung disease (multiple); and prostatitis.

NR:

description
BMP and activin membrane-bound inhibitor homolog

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0005887 integral component of plasma membrane cellular_component

KEGG:

id description
K10162 BAMBI; BMP and activin membrane-bound inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259650.3 True 1827 mRNA 0.49 3 8482871 8487451

Neighbor

gene id symbol gene type direction distance location
ccdc57 ccdc57 coding upstream 81228 8361499 ~ 8401643 (+)
LOC103030301 csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC107755503,LOC103369437 coding upstream 122618 8347603 ~ 8360253 (+)
LOC103035888 LOC107566522,LOC108435270,LOC107755508,LOC107684054,LOC108273414 coding upstream 201181 7583827 ~ 8281690 (+)
nog nog coding upstream 1007626 7472907 ~ 7475245 (+)
ankfn1 ankfn1,LOC107684130,LOC107702427 coding upstream 1016414 7353086 ~ 7466457 (+)
pald1 pald1 coding downstream 111731 8599182 ~ 8703597 (+)
LOC103023541 LOC108441018,LOC107709014,LOC107595168 coding downstream 506992 8994443 ~ 9029155 (+)
LOC103022911 LOC108413183 coding downstream 689787 9177238 ~ 9207684 (+)
LOC103043335 npffr1 coding downstream 733280 9220731 ~ 9267596 (+)
LOC103040920 sdk2,sdk2b coding downstream 1342034 9829485 ~ 10373341 (+)
G35300 NA non-coding upstream 74261 8407480 ~ 8408610 (+)
G35299 NA non-coding upstream 75478 8406851 ~ 8407393 (+)
G35244 NA non-coding upstream 374401 8108160 ~ 8108470 (+)
G35148 NA non-coding upstream 1159914 7321920 ~ 7322957 (+)
G35143 NA non-coding upstream 1249008 7233635 ~ 7233863 (+)
G35359 NA non-coding downstream 64959 8552410 ~ 8552834 (+)
G35361 NA non-coding downstream 69785 8557236 ~ 8560349 (+)
G35362 NA non-coding downstream 72910 8560361 ~ 8562959 (+)
G35400 NA non-coding downstream 413734 8901185 ~ 8901451 (+)
G35454 NA non-coding downstream 542017 9029468 ~ 9033192 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 9882 8442132 ~ 8472989 (+)
fasn fasn other upstream 44006 8386173 ~ 8438865 (+)
G35021 NA other upstream 1578874 6902417 ~ 6903997 (+)
G34931 NA other upstream 1751447 6730954 ~ 6731424 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other upstream 1819264 6592607 ~ 6663607 (+)
LOC103024481 adamts14,LOC103367006 other downstream 231903 8719354 ~ 8851392 (+)
G35744 mrpl38 other downstream 1983929 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 2260186 10747637 ~ 11001805 (+)
G35903 NA other downstream 3314007 11801458 ~ 11802204 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 3624239 12111690 ~ 12566941 (+)

Expression


Co-expression Network