LOC103021762 (asah2,LOC107598643)


Basic Information

Item Value
gene id LOC103021762
gene name asah2,LOC107598643
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21987804 ~ 22011805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601491.2
TAAAACTGTGCTTGTTAAAGCCACCTTTGTCCCTGAGGAGCTTTAGAGCTTTACTGTATCAGAATCAGAGGTATCGATCCGCTCACGGAGGCTGCTTCCTGAGTtaCAAAAGAATGGCTCGTAAGGCTGTCTGCTGTGGCCTCAGCAGTCTGGAGCTGATGCTCATTGTTCTGTTCCTGCTGATGACTGGAATCACTATCGGACTGATCACTGTGTTAGCCATCAACCTCAACTCCCAAACACCGGAGCCGGAGGAACCGACTCCATCAGTACCGCCTCCAGAGAACCCCTACCTGATCGGGGTGGGCAGAGCAGACTGCACTGGACCAGTTGCGGATGTCCCCCTGATGGGCTATGCCAACCCGGATCAGACTGCAGGTGGGATCCACACTCGTCTGTTCAGCAGGGCCTTCATTGTGGACGATGGAAGCAAGAGGGTGGTGTTCGTGAACGCAGATATTGGCATGGTCTCTCAAAGACTGAGACTAGAGGTGCTGAAAGAGCTGGAGCTGAAGTACGGAGATCTCTACAGGCAGGAAAACGTAATTCTgagtggaacacacacacactccggcCTGGCGGGCTATTTCCAGTACACACTCTTTATCATCACCAGTAAAGGTTATATCAAGTCATCCATCCAACCCATTGTCAACGGAATTGTGAAGAGCATTGATGTGGCCCATAAGAATATGAGACCTGGGAGAATATTTGTGAGCAAAGGAGAAATTGTGGGCAGTAATCTCAACAGGAGTCCACACTCATACCTGAACAACCCTGAGGAGGAAAGAAACAGATATAAGTCCAATACAGATGAGCAGATTGTGACTCTAAAGTTTACAGATTTGGATGGAGATGGAATGGGGGTTTTCAgctggttTGCTGTTCATCCAGTAAGTATGAATTACACCAATCGCATGGTGAGCTCGGATAACCTCGGCTACGCCTCCTATCTGTTCGAGCAGGAGAAAAACATTGGCTACTTACCCGGTGAGGGTCCATTTGTAGCAGCGTTTGCAACTGCCAACAGCGGGGATGTGACTCCTAACACTCGTGGTCCGTACTGTATAAACACAGGAGAGAGATGTGATTACCTCAACAGCTCCTGTCCCATCGGTGGGACTAGAATGTGTGTTGCCTTTGGGCCGGGGAACGACATCTTTGACAGCACCAGGATTATAGGAGAGAATATCTACAGAAAGGCGAAGGAGCTTTATGGCAGTGCTAAACAGGAGCTGCGGGGGAGTGTCCATGCTGCTCATCAGTGGGTCAACATGACAGACGTCACTGTTCAACTTGACTCCACCCACAGTGTTAAGACCTGTAAACCTGCACTCGGGCACAGCTTTGCTGCAGGAACAATAGACGGAGGAGGAGATCTGAACTTCACACAAGGGGCAGTTGAAGGAGATCCGTTCTGGGATGGTATTAGGGACGCTCTCTTAGGTGCACCATCCAAAGAGATTCAAGAATGTCACAACCCCAAACCTATTCTCTTCAGCACTGGAGAGATGAACTGGCCGTTTCCGTGGCATCCAGACATTGTAGATGTTCAGATTATCACCATTGGTTCGGTGGCCATAGTGGCTGTTCCAGGAGAGGCAACAACAATGTCAGGAAGAAGGATCAGAGAAGGCGTTAAACAGGAGCTGGAGAAGAATGCTGCGTTCACCAATTCAGAAGTTGTCATTACTGGCCTTTGCAacatctacacacactacaTCACTACTTATGAAGAGTatcagGTGCAGCGATATGAAGGTGCTTCCACTATTTATGGTCCTCACACTCTCTCAGCCTACATCCAGCACTTCAGAGGCCTGGCCAGAGCCATAGCAGAGGGTAAAGTGGGGGAGCTGCCAAAGGGTCCTGAACCTCCGTTCTTCAGCAATCTCTTCTCTCTACTGGGGGAGCCGCCTGTGGATAGAAGCCCAGAAAACACCACATTTGGAGACGTCCTGCAGCAGGTTCACCCTGTGTATAAAGTGGGAGAGGTTGCTTCTGTGACTTTTGTAGCTGGGAACCCCAGAAACTCCGGGGAAATGAGAGACAAGACCTTCGTCACAGTGGAGAAGTTTCACAACAGCACCAGCACATGGGAGGTTGTTCATACAGATGCATCATGGGAGACCAGGTTTTACTGGATTAAGGGGACTGGTAATCAGAGTAATGCCACTGTGGAGTGGCACATCCCTCTCTCAGCAGAGTCCGGCACCTACAGGATCCGACACTTCGGCCACTACAAACAGCGCGTGATATTTCCTGTGATCACTGCATACGAGGGATCTTCACACACGTTCAGAGTCACCAAAACACTCTATTCTCTATAAATGTATTCCTGTATAGTACATAAGGAGCGCAATGTTTAGTAAAATGTAATGTCTGTCCTAAAGTATGTTTTACTGCTGCAAATTAGGCAATGTTTAGTAATCCTAATGCAGTTATTACACAAATATTTTGCGTCAATACTACTCATATAACTTGTATTATATTTACTAACttaatgaatttttattttcagtgtacACAGGTACACAGCAGGTTTATTGCCTGCTTTCTATGttataggctgtaagagcaagtatAGTTTTCTGAGCTggtaactctgtgttggctaTATGTAATGCTGTTCATAACACATATGCTTtcttaattacatatttttttttaatgtgtattttacttaaattaaataataaaaataaagagtaaataaata

Function

symbol description
asah2 Enables N-acylsphingosine amidohydrolase activity. Acts upstream of or within ceramide metabolic process. Located in Golgi membrane; apical plasma membrane; and endoplasmic reticulum membrane. Orthologous to several human genes including ASAH2B (N-acylsphingosine amidohydrolase 2B).

NR:

description
PREDICTED: neutral ceramidase

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
K12349 ASAH2; neutral ceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601491.2 True 2719 mRNA 0.47 21 21987804 22011805

Neighbor

gene id symbol gene type direction distance location
LOC103023313 NA coding upstream 3520 21959447 ~ 21984284 (+)
sgms1 sgms1 coding upstream 37127 21938629 ~ 21950677 (+)
g6pc g6pc,g6pca.2,LOC106579337 coding upstream 109591 21873312 ~ 21878213 (+)
ptges3l ptges3l,si:ch211-131k2.3,LOC107653952 coding upstream 136823 21843965 ~ 21850981 (+)
LOC111192390 NA coding upstream 159677 21824379 ~ 21828127 (+)
LOC111192422 NA coding downstream 58442 22070247 ~ 22097898 (+)
prkg1 prkg1,prkg1b,LOC107695529,LOC106589397 coding downstream 85946 22097751 ~ 22350082 (+)
dkk1 dkk1 coding downstream 356971 22368776 ~ 22371487 (+)
LOC111192392 LOC108416223 coding downstream 986874 22998679 ~ 23000623 (+)
tfam NA coding downstream 1376175 23387980 ~ 23396378 (+)
G38324 NA non-coding upstream 50731 21909061 ~ 21937073 (+)
G38314 NA non-coding upstream 104898 21881436 ~ 21882906 (+)
G38310 LOC108443262,LOC108274343,LOC107695523,LOC107708934,LOC107654044,LOC107598610 non-coding upstream 116268 21870422 ~ 21871536 (+)
G38306 kat7,LOC108443263,LOC107695506,LOC107557320,LOC106579267 non-coding upstream 146526 21828150 ~ 21841278 (+)
G38301 NA non-coding upstream 208711 21778658 ~ 21779093 (+)
G38330 a1cf non-coding downstream 1694 22013499 ~ 22016473 (+)
G38375 NA non-coding downstream 41554 22053359 ~ 22053669 (+)
G38391 NA non-coding downstream 240344 22252149 ~ 22252642 (+)
G38392 NA non-coding downstream 267149 22278954 ~ 22327073 (+)
G38379 NA non-coding downstream 341704 22353509 ~ 22354614 (+)
plce1 plce1,LOC107743958 other upstream 690981 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 859040 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 957007 21019169 ~ 21030797 (+)
G37943 NA other upstream 1829465 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 2476363 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 1735664 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 1735766 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 1735868 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 1735970 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 1736072 23747877 ~ 23747949 (+)

Expression


Co-expression Network