LOC103024821 (LOC108425935)


Basic Information

Item Value
gene id LOC103024821
gene name LOC108425935
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17500469 ~ 17504817 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015603206.2
GCTTGTTTAATTCTTTCCTGCAGACACACATTTGGTTTTTGTAGCACAGAAAAGAGCAGCAACACTGGCTTCTCCTTGACTTTGGCAGTGACCTGTTCCAGCGGTCTTCGGGAGCTTTCACTTTGAAGGATGGACAAGACTGTCTAGAAGGATCCATCATTGACTCATTGACGCTGTGGGCTCAGAATGATTAGGGTCATCTGTCTTTTGCTTCTGGCCTTATATCTGGTGACGGGCTCCAAGCTGTGTCCTCATCACTGCCTGTGTTACGAAAACTCAGACCTGGTGGACTGTCGGGCCAGAGGCTTCACGGTTTTCCCACATGGCATCCCTCATGGAACCTGGCTCCTGGACCTCAGTGAGAACAGACTGTATGAGCTGAAGAGCTCCACGTTTACTGGGATTTGGGCACTGCGCATCCTCCTGCTTCAGAACAATGCCATCCAGGCAATGCAGCCGCAGGCTTTGGCATCTTTGTCTTTTCTGGAGAAGCTGGACCTGAGTCACAATGACCTGCGCTTCCTTGTCCAAGATTTTACCTACGGCTTGGCGGCCCTCAAGGACCTTCGTCTGGCCCACAACTCTCTGGAGTTCCTGGAAACCCGCTCCTTTGCCCATCTGGAGAGCCTAGAGAAGCTGGACTTGAGTCACAACCACATTCGGATCATCCAGTGCGGAGCGTTCCACGGGCTTACCAGCCTAAAGCAGCTCAACCTGGCCTGGAACCAACTCTCCATGCTCCAGAGTGGCCTGCTAACCATGCAGCAGAAGCTCAGTGTCCTCCTGCTGGGCCACAATAACATCTCCAGCATTGAGACAGAAGTCTTCACCCCCTTGCACAGCCTCAGTGTACTGGGCCTTGAGGCCAATCAGCTGGGGAGCCTCAAATTCAGGACGTTCCTGAACCTCCAGACCCCCAGCACACACGTGCAACTGTCCGAGAACCCGTGGGTGTGCGACTGCGAGCTGCACCGAGTTTTCAGCAAAATCCTCCACGTTCGGCGCCTCCACATAGACGACTACTGGAACATCACTTGCCACACGCCGCCTCTGCTGGCCGGGGCGTCTCCTGCACTGATGGACAGTCAGCTGTGTATAGCAGAGACCGCCACCGTTCTGGTCATCACAGCGACTGTGATGGTCACAGTGGTGGCTGCGATAGCGATGGCAGAACGAAACCGCAGGAAGAAACGTCTGAATCTGTCAAAGCAAGGGAGCGAGTCTGAAACAGCACtgaacaaatgagaaaacatggaacatgaAAATCACCAAAGACTAAAGTACCAAAACAGTACTGTGTCTAGGAAACTAATGAACATCTCTGAGAAACTGAAATAGAATAAGaacgaaaaaaacaaaaaagatttacttGAAATATaagtactgtacatttaaaatttttaaaaagacCACGCTGTTGTTTCCTTAGAAAAACACAAGAGAATTCTTGATGTCCATTCTTTATGAATGACAAGTGTAAACATAGAACCTTTTCAAAGTTTGGAGAACCTCCATGCAGTGTAAAGGTTTTTAGAACGAACCCTCACATTTACTGTAAACAGTATATAGGTGAAAAAGGGTCTGGGTCAAAGgcatttaatatataaacactatacagctctggaaaaaataagagtttctttgattttacc

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015603206.2 True 1652 mRNA 0.48 2 17500469 17504817

Neighbor

gene id symbol gene type direction distance location
LOC111192380 NA coding downstream 33798 17442641 ~ 17466671 (-)
LOC111192420 NA coding downstream 61977 17431006 ~ 17438492 (-)
rsl1d1 NA coding downstream 78674 17415075 ~ 17421795 (-)
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding downstream 174554 17319206 ~ 17325915 (-)
LOC103027309 NA coding downstream 211637 17273373 ~ 17288832 (-)
lsm12 lsm12,LOC107708984,LOC107693683,LOC107562026 coding upstream 5143 17509960 ~ 17517710 (-)
wnk4 NA coding upstream 206183 17711000 ~ 17784278 (-)
LOC103047174 fam57b,fam57bb,LOC108274141,LOC106583943,LOC107578766,LOC106579402 coding upstream 298917 17803734 ~ 17820280 (-)
maz maz coding upstream 317941 17822758 ~ 17836906 (-)
taok2 taok2b,LOC107693686,LOC108273910,LOC107562015,LOC107708977,LOC107571768 coding upstream 334610 17839427 ~ 17872154 (-)
G37298 tmem101,LOC107720276 non-coding downstream 6054 17488885 ~ 17494415 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding downstream 110048 17385841 ~ 17390421 (-)
G37254 tnrc6b,LOC107690060 non-coding downstream 163147 17335591 ~ 17337322 (-)
G37237 tnrc6b non-coding downstream 172873 17241176 ~ 17327596 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding downstream 253016 17241720 ~ 17247453 (-)
G37309 NA non-coding upstream 48755 17553572 ~ 17555922 (-)
G37333 LOC103045739 non-coding upstream 200917 17705734 ~ 17708605 (-)
G37443 NA non-coding upstream 621717 18126534 ~ 18126807 (-)
G37444 NA non-coding upstream 622437 18127254 ~ 18127560 (-)
G37449 NA non-coding upstream 633132 18137949 ~ 18139122 (-)
LOC103025140 NA other downstream 23591 17473910 ~ 17476878 (-)
G37290 NA other downstream 34445 17432972 ~ 17466024 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other downstream 118736 17374184 ~ 17381733 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 316042 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 437522 17047607 ~ 17062947 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 29886 17534703 ~ 17689384 (-)
cntd1 NA other upstream 187680 17692497 ~ 17705023 (-)
vps25 vps25 other upstream 285134 17789951 ~ 17795988 (-)
LOC103047479 LOC108441156 other upstream 777673 18282490 ~ 18317957 (-)
G37603 NA other upstream 1067874 18572691 ~ 18573176 (-)

Expression


Co-expression Network