LOC103045903 (LOC108426443)


Basic Information

Item Value
gene id LOC103045903
gene name LOC108426443
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6705068 ~ 6711220 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608325.2
GTTTTAGAGCCATCATTGTGTGTACCATGAAACAGTGTCATCCAGAGGCTACCTGTCAAGCAAGGAGCTTTAGAGAGATTTAGGATTTGGATTGCATTAGTGCAGCTCTGAGAGGGAGGGGCAAGGGATTGCTGGAAAGAAAATGCATGCACTgagtaaacagagaaaaacagaagagcACAGAGAGGGACTGCTCGTCTGTAGTACATACAGTGAAATAGCAACTATTTAGGAGTTAAGGATGACTGAAAAAATGGAAATTAGTGTTTTTAGGTTAAAGTGTAAAGAATGAGAATGCTGTCTACAGTGTTTTTATCAGAGTTTGGGTGTTCTGTGTAATGCACATCACACCTCATGCTGAGACCCATACTCTACCTCCTATACACATGGACAGGAGGACAGCCGGTCACCCCCTGCCCAGCACTGCAAAGGACTCATTTGGTGCAGCTTTAGATGCCATCAGTGTGACCACAGAGCTTGTTGGTGAGGAACTGAAACCTCACTTGGACACCCTGCTGACTCTTGCTGTGGAGAGAAAACGTGGCCTAGCTGAGCAGGTGGTAGAGAGTGGCATTCTGCCTGTTTTGGCTCAGGCTCTGAGGAGGAAGAGCTCTCTCACTATACACACAGCCAGATTGCTAGCTGAACTCGCTAGGGAGGCTCCAGTGAGAGACAGCTGCTTTGACACTGGCATTATATCAGCCCTTCTGACACTGCTGCTCAGTAAGGACCAGGATCTGCTCCTGCATGTTATCCGAGCCATAGCAAGAATCTGCTGTGATAGCAATTTACAGCAGGAGAGGATGTTGAGGTTGGGAGCTGTTCCGCGGCTGGTGGCTGTTCTGCTGCAGCACTGTGAGAACTACCCCTTGCTGAGCTCATGCCTGCTGGCTCTGTGTAACCTGGCTGATATGGGCGAACAGGACGACTCCAAGTTCGTGTGGGAGAAAAGCGGTCAGTTTGACCAGGGAGAGCAAGTGTTCCACGGCACTTCCCAGCACTCCTTTAGCTTTGTGTCAGCAGTGACTGTAGTCCGACTGAACCAGTGGTCTCCGGGACAGTACTCTGTGAGCGTGGAAGCACTTCAGAGATGTTCCACGCTGTTATGGGGAGCACATAATGGACGGCAGACCGGCTGGAGCTTACCACACATGAGCTGCTGCCCCAAATTCTACAAGGTTATAAAGTACTCGGTCAAGAACATTCCTAAGAACGGGAATCTGAAGACTGCAGTATTTCACACCTTACTGTGATGATGGATGATTGAAGGACGTATCGGTGtataagaaaaatgtatttgaaaaaGAAGCTTTTAGTAGACTGACAAAGGAACAATCTGACATACCATAAATATGGATATACTAAGAAGAGAATCACCAACCACCAAATATTAcctgatctgtggtggtcctgtgggctCCTCATCACTATAGAACATGTCAAAAGGAGGATAACGAAGTATGCAAGACAACAAAAGACCTACAGACTGTAATggtagaactacaaagtgctccagCATGATCCATGGAGCTGAGTGCAGAAAATTAAGTGACCAGTGGGTGTTAGCTTTACATGACACAAAGGGCAGCTGgtgtttttgaaaaataataataaaataaaaatggataacattttttgtaaatacaGAGGCAAAGGAGTTGTGGCACACTTGTTATTGTTCCTAAGTCTGTCAGATCCAAGCGTCCAGGCAGATTAAGTCTTTCCAAGCTTTGCACAGAACATAAGAGGGGATAGAGCCAGAGATGCAGTCAGCTAGCTTTGTAACACTCTGTGCTAAGCATCTAAGAGGCCTTACAGTATTGGATTCCACGATCTACTGAAGGCTACATAGGCTTTAACTAACACAAGgccagtttaaaaaaaggtaaacgAAGCCTTATGTTCACATATAATATGTGAAAtacactgaatatatatatatatatatatatatatatatt

Function

NR:

description
PREDICTED: rap1 GTPase-GDP dissociation stimulator 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608325.2 True 1961 mRNA 0.45 5 6705068 6711220

Neighbor

gene id symbol gene type direction distance location
bicral gltscr1l coding downstream 127009 6567389 ~ 6578059 (-)
LOC103027554 NA coding downstream 146233 6553333 ~ 6558835 (-)
LOC103025956 fscn2,LOC107684083,LOC107722237,LOC107581600 coding downstream 417435 6273871 ~ 6287633 (-)
birc5 birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 coding downstream 434125 6268401 ~ 6270943 (-)
tmem235 tmem235 coding downstream 438391 6256404 ~ 6266677 (-)
LOC103031455 si:ch73-127m5.2,LOC108426537,LOC107749848,LOC107561855,LOC107684095,LOC108274350,LOC107601426 coding upstream 94 6711314 ~ 6715739 (-)
LOC103032713 camk2g1,camk2g,LOC108410509,LOC108273829,LOC107561852,LOC107684098,LOC107690933 coding upstream 175489 6886709 ~ 6993101 (-)
sec24c sec24c coding upstream 290920 7002140 ~ 7020769 (-)
faap100 NA coding upstream 357989 7069209 ~ 7075841 (-)
chad chad,LOC107706882,LOC107675646,LOC107727306,LOC107552753,LOC107698804 coding upstream 385822 7097042 ~ 7104020 (-)
G34988 NA non-coding downstream 24159 6680351 ~ 6680909 (-)
G34987 timm23a,timm23,LOC103030206,LOC108426535,LOC107690962,LOC107561858,LOC107684090 non-coding downstream 25114 6675579 ~ 6679954 (-)
G34939 NA non-coding downstream 344690 6359911 ~ 6360378 (-)
G34829 trub1,LOC107755443,LOC107702428 non-coding downstream 552207 6149230 ~ 6152861 (-)
G34791 NA non-coding downstream 661629 6042925 ~ 6043439 (-)
G34997 NA non-coding upstream 17641 6728861 ~ 6729154 (-)
G34998 NA non-coding upstream 19722 6730942 ~ 6731499 (-)
G35069 NA non-coding upstream 249953 6961173 ~ 6961993 (-)
G35077 kctd2,LOC106589267,LOC107706864,LOC108410512 non-coding upstream 323510 7034730 ~ 7035818 (-)
G35078 NA non-coding upstream 325041 7036261 ~ 7040642 (-)
LOC103030829 NA other downstream 8777 6688167 ~ 6696291 (-)
G34981 qki2,LOC103029551,LOC108426533 other downstream 51483 6619680 ~ 6653585 (-)
ndufaf8 NA other downstream 158486 6543144 ~ 6546582 (-)
G34953 NA other downstream 163704 6537021 ~ 6541364 (-)
LOC103026268 bahcc1 other downstream 191367 6366684 ~ 6513701 (-)
G35429 NA other upstream 2213608 8924828 ~ 8927717 (-)
tbata NA other upstream 2227713 8938933 ~ 9003896 (-)
G35512 NA other upstream 2493350 9204570 ~ 9205911 (-)
rpl38 NA other upstream 2714855 9426075 ~ 9431228 (-)
clrn3 NA other upstream 4342439 11053659 ~ 11083182 (-)

Expression


Co-expression Network