LOC103038619


Basic Information

Item Value
gene id LOC103038619
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3884014 ~ 3893365 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608330.2
ATGTCTAAGTCTAAGATGCAGCATTTTATGCAAagattcttccacatgctctccTACGAGGTGGCCATACTTCACTCAGATAGTGTAATATTGTTTTGACTTGGAATTGCGAGACCTAAGataTGGCATCTGAGTTCTGCCTTAGTCTGACCAAATACTTCCTGTTCGTCTTCAacctggtcttttttcttttaggcTCAGCCCTGCTGTCTCTGGGATTATGGATCATGTTTTCTGAGACAGGTATTCCCAtcCCTGGTCTGGACTTCATTCCCCTGTCTCTGCTGTCCTATCTTCTGATCATCAGTGGAGCTGTCACTATATTACTGGGCTTCTTTGGTTGCCTTGGTGCTCTGAAGGAGGTCAAATGCATGCTGGCCATTTATTTCATCCTGCTCACTGTGCTTCTTGCGGCTCAAACTGTGGGAGGAGTTCTGCTCATTACTCAGAAGAGCACATTTCAGAGTTCTTTAGATGACCACATGACCAACATTATTAAGGAGTTTGGGAAGAATGACTCAAGTCTGGAAGATATAAAGCTGACTCTAGAGATCCTTCAGCATGAGGCTCAGTGCTGTGGCTGGACTGGGTCAGAAGACTGGAATCCTGTCCCCTGTTCCTGTTTCTATCTTGTCAATGTCACAGCTAATGCTACCAATCATAACTTTCTCTCTAAGACCTGCCCCTGTGATTCCTCATCAAATCTCACATGTCGAAAGCATGAACAGGCGTGCAAAGGCGTTGTTGATCAGTggctgaacacacacattcTGACCATTCTCATAGTGGTGTTTGCACTAGCTCTGGTGGAGATATGTGGTACGATCCTTTCGATGTGTCTGTATAGACAGGCTTCTGTGGATTATTCCTTGACTCCCTACTATTAAACCACATCAGAATGGAGGAAGAACCTCAGCTAAAGGATGTGTAATACAGTGAAGATGATTGTTTATTGCTGATTTCTGTACATTAGTTCATTTGTGTTCATTTTATACTGCATATAAGATGGCGAATTTCTTgttgatgtaaataaataaatacatgctctTGATAACGA
>XM_022668925.1
GGAGCTGTTATGTCTAAGTCTAAGATGCAGCATTTTATGCAAagattcttccacatgctctccTACGAGGTGGCCATACTTCACTCAGATAGTGTAATATTGTTTTGACTTGGAATTGCGAGACCTAAGataTGGCATCTGAGTTCTGCCTTAGTCTGACCAAATACTTCCTGTTCGTCTTCAacctggtcttttttcttttaggcTCAGCCCTGCTGTCTCTGGGATTATGGATCATGTTTTCTGAGACAGGTATTCCCAtcCCTGGTCTGGACTTCATTCCCCTGTCTCTGCTGTCCTATCTTCTGATCATCAGTGGAGCTGTCACTATATTACTGGGCTTCTTTGGTTGCCTTGGTGCTCTGAAGGAGGTCAAATGCATGCTGGCCATTTATTTCATCCTGCTCACTGTGCTTCTTGCGGCTCAAACTGTGGGAGGAGTTCTGCTCATTACTCAGAAGAGCACATTTCAGAGTTCTTTAGATGACCACATGACCAACATTATTAAGGAGTTTGGGAAGAATGACTCAAGTCTGGAAGATATAAAGCTGACTCTAGAGATCCTTCAGCATGAGGCTCAGTGCTGTGGCTGGACTGGGTCAGAAGACTGGAATCCTGTCCCCTGTTCCTGTTTCTATCTTGTCAATGTCACAGCTAATGCTACCAATCATAACTTTCTCTCTAAGACCTGCCCCTGTGATTCCTCATCAAATCTCACATGTCGAAAGCATGAACAGGCGTGCAAAGGCGTTGTTGATCAGTggctgaacacacacattcTGACCATTCTCATAGTGGTGTTTGCACTAGCTCTGGTGGAGtGTCTCCAGTGGGTGTGTCTGGTCATATTCTGTTGCCTTAGTTGCTCCTGTCGATGTTGTCCTGTAAGAAAGAGCCGTGGCAGCCATGTTCAGCTCTCCAGGTCTCTGTGTGAATTTGATGTGCAGTGGTGCTGTGTTGTGTGGCGCACAATGCTTAACTCTAAACCAAATTGTAGCataaattatgaaaaataacattgctgaatACAGGAAATCTCTAATCCTAAAATATCCTAAAATGACTTCATGCATATTCGTTAAAAGCATATTCTTTAGTAAAGACATGcgtttttttaattgtacacTGATATGACACaaaaatgtgaatgtgatttctgccagagttgcttTTCTGTTCACCTGgtcaattctagccagatgccaccagtcacgatcattatcACACACTGCACCAAGCACTGTGGAtgataatgccttctataaTGTATTCCCGGCACACACGTGAAACTGTGGATCGAGAAACACTAATAAATGCCTGCACACCTGGAAAAAGTATGTTTCAGCCATGGCAACATTTTAAGGACGTCCAGGAAACTTGAATGATTAAAcattctaaaacaaaacaaacgcCATAATGTTGAGAACATTCGCTCTTAAGCTTGGGTGGTTTTAACAGTAGAAGTTCTTTAT
>XM_022668926.1
AGGAGCTGTTATGTCTAAGTCTAAGATGCAGCATTTTATGCAAagattcttccacatgctctccTACGAGGTGGCCATACTTCACTCAGATAGTGTAATATTGTTTTGACTTGGAATTGCGAGACCTAAGAGAGTTAATATTCTCTGTAGCTGTGAAAGATGATCTGGTGCCTCTGTTTCCAGTATCCTGTAATGTGAGAGTGCTGCAGataTGGCATCTGAGTTCTGCCTTAGTCTGACCAAATACTTCCTGTTCGTCTTCAacctggtcttttttcttttaggcTCAGCCCTGCTGTCTCTGGGATTATGGATCATGTTTTCTGAGACAGGTATTCCCAtcCCTGGTCTGGACTTCATTCCCCTGTCTCTGCTGTCCTATCTTCTGATCATCAGTGGAGCTGTCACTATATTACTGGGCTTCTTTGGTTGCCTTGGTGCTCTGAAGGAGGTCAAATGCATGCTGGCCATTTATTTCATCCTGCTCACTGTGCTTCTTGCGGCTCAAACTGTGGGAGGAGTTCTGCTCATTACTCAGAAGAGCACATTTCAGAGTTCTTTAGATGACCACATGACCAACATTATTAAGGAGTTTGGGAAGAATGACTCAAGTCTGGAAGATATAAAGCTGACTCTAGAGATCCTTCAGCATGAGGCTCAGTGCTGTGGCTGGACTGGGTCAGAAGACTGGAATCCTGTCCCCTGTTCCTGTTTCTATCTTGTCAATGTCACAGCTAATGCTACCAATCATAACTTTCTCTCTAAGACCTGCCCCTGTGATTCCTCATCAAATCTCACATGTCGAAAGCATGAACAGGCGTGCAAAGGCGTTGTTGATCAGTggctgaacacacacattcTGACCATTCTCATAGTGGTGTTTGCACTAGCTCTGGTGGAGtGTCTCCAGTGGGTGTGTCTGGTCATATTCTGTTGCCTTAGTTGCTCCTGTCGATGTTGTCCTGTAAGAAAGAGCCGTGGCAGCCATGTTCAGCTCTCCAGGTCTCTGTGTGAATTTGATGTGCAGTGGTGCTGTGTTGTGTGGCGCACAATGCTTAACTCTAAACCAAATTGTAGCataaattatgaaaaataacattgctgaatACAGGAAATCTCTAATCCTAAAATATCCTAAAATGACTTCATGCATATTCGTTAAAAGCATATTCTTTAGTAAAGACATGcgtttttttaattgtacacTGATATGACACaaaaatgtgaatgtgatttctgccagagttgcttTTCTGTTCACCTGgtcaattctagccagatgccaccagtcacgatcattatcACACACTGCACCAAGCACTGTGGAtgataatgccttctataaTGTATTCCCGGCACACACGTGAAACTGTGGATCGAGAAACACTAATAAATGCCTGCACACCTGGAAAAAGTATGTTTCAGCCATGGCAACATTTTAAGGACGTCCAGGAAACTTGAATGATTAAAcattctaaaacaaaacaaacgcCATAATGTTGAGAACATTCGCTCTTAAGCTTGGGTGGTTTTAACAGTAGAAGTTCTTTAT
>XM_022668927.1
ATCAGGAGCTGTTATGTCTAAGTCTAAGATGCAGCATTTTATGCAAagattcttccacatgctctccTACGAGGTGGCCATACTTCACTCAGATAGTGTAATATTGTTTTGACTTGGAATTGCGAGACCTAAGataTGGCATCTGAGTTCTGCCTTAGTCTGACCAAATACTTCCTGTTCGTCTTCAacctggtcttttttcttttaggcTCAGCCCTGCTGTCTCTGGGATTATGGATCATGTTTTCTGAGACAGGTATTCCCAtcCCTGGTCTGGACTTCATTCCCCTGTCTCTGCTGTCCTATCTTCTGATCATCAGTGGAGCTGTCACTATATTACTGGGCTTCTTTGGTTGCCTTGGTGCTCTGAAGGAGGTCAAATGCATGCTGGCCATTTATTTCATCCTGCTCACTGTGCTTCTTGCGGCTCAAACTGTGGGAGGAGTTCTGCTCATTACTCAGAAGAGCACATTTCAGAGTTCTTTAGATGACCACATGACCAACATTATTAAGGAGTTTGGGAAGAATGACTCAAGTCTGGAAGATATAAAGCTGACTCTAGAGATCCTTCAGCATGAGGCTCAGTGCTGTGGCTGGACTGGGTCAGAAGACTGGAATCCTGTCCCCTGTTCCTGTTTCTATCTTGTCAATGTCACAGCTAATGCTACCAATCATAACTTTCTCTCTAAGACCTGCCCCTGTGATTCCTCATCAAATCTCACATGTCGAAAGCATGCAAAGGCGTGCAAAGGCGTTGTTGATCAGTggctgaacacacacattcTGACCATTCTCATAGTGGTGTTTGCACTAGCTCTGGTGGAGtGTCTCCAGTGGGTGTGTCTGGTCATATTCTGTTGCCTTAGTTGCTCCTGTCGATGTTGTCCTGTAAGAAAGAGCCGTGGCAGCCATGTTCAGCTCTCCAGGTCTCTGTGTGAATTTGATGTGCAGTGGTGCTGTGTTGTGTGGCGCACAATGCTTAACTCTAAACCAAATTGTAGCataaattatgaaaaataacattgctgaatACAGGAAATCTCTAATCCTAAAATATCCTAAAATGACTTCATGCATATTCGTTAAAAGCATATTCTTTAGTAAAGACATGcgtttttttaattgtacacTGATATGACACaaaaatgtgaatgtgatttctgccagagttgcttTTCTGTTCACCTGgtcaattctagccagatgccaccagtcacgatcattatcACACACTGCACCAAGCACTGTGGAtgataatgccttctataaTGTATTCCCGGCACACACGTGAAACTGTGGATCGAGAAACACTAATAAATGCCTGCACACCTGGAAAAAGTATGTTTCAGCCATGGCAACATTTTAAGGACGTCCAGGAAACTTGAATGATTAAAcattctaaaacaaaacaaacgcCATAATGTTGAGAACATTCGCTCTTAAGCTTGGGTGGTTTTAACAGTAGAAGTTCTTTAT
>XM_022668928.1
GGAGCTGTTATGTCTAAGTCTAAGATGCAGCATTTTATGCAAagattcttccacatgctctccTACGAGGTGGCCATACTTCACTCAGATAGTGTAATATTGTTTTGACTTGGAATTGCGAGACCTAAGataTGGCATCTGAGTTCTGCCTTAGTCTGACCAAATACTTCCTGTTCGTCTTCAacctggtcttttttcttttaggcTCAGCCCTGCTGTCTCTGGGATTATGGATCATGTTTTCTGAGACAGGTATTCCCAtcCCTGGTCTGGACTTCATTCCCCTGTCTCTGCTGTCCTATCTTCTGATCATCAGTGGAGCTGTCACTATATTACTGGGCTTCTTTGGTTGCCTTGGTGCTCTGAAGGAGGTCAAATGCATGCTGGCCATTTATTTCATCCTGCTCACTGTGCTTCTTGCGGCTCAAACTGTGGGAGGAGTTCTGCTCATTACTCAGAAGAGCACATTTCAGAGTTCTTTAGATGACCACATGACCAACATTATTAAGGAGTTTGGGAAGAATGACTCAAGTCTGGAAGATATAAAGCTGACTCTAGAGATCCTTCAGCATGAGGCTCAGTGCTGTGGCTGGACTGGGTCAGAAGACTGGAATCCTGTCCCCTGTTCCTGTTTCTATCTTGTCAATGTCACAGCTAATGCTACCAATCATAACTTTCTCTCTAAGACCTGCCCCTGTGATTCCTCATCAAATCTCACATGTCGAAAGCATGAACAGGCGTGCAAAGGCGTTGTTGATCAGTggctgaacacacacattcTGACCATTCTCATAGTGGTGTTTGCACTAGCTCTGGTGGAGtGTCTCCAGTGGGTGTGTCTGGTCATATTCTGTTGCCTTAGTTGCTCCTGTCGATGTTGTCCTGTAAGAAAGAGCCGTGGCAGCCATGTTCAGCTCTCCAGAGATTTCAATGTGGAGTATTGGCAAGGTATATTGCTTATTCTGGATGTGTGGTGAATAGGTTGGctgtgtgtgaatctgtgtgtttattaaatgcatgtgtgtgagtgtgtctctgCCTTTCTTGCCTGCTTCTCTTTTGCCTAAATGgtaattaatgtgaatattttttttttctgggacaCTGtaagattaatttaattatattattattttatttagtttgtgtCTGCATGCATACATGTTAGTggtggatgtaaaaaaaaaaaatctgctctcCTGATTTTGATTCATCTTTCccatatttaaagtaaaacattACCAAAATGTATTAACCAATAACAGCTCAGATAACTAAATAAGGTAATGTTTACCTGTCTAGTCCCggcatcatttatttgtatGATGGGTTtagctcaccatcagtgtgtagtcttgctaCCTTCCATTAAATcctcattttttatataaagactGATAAGCAAAagcataagagcaagttaccattttctttaTGGTAGAGTACAGCTGCAACAAAGTAATGCTGTACTTGATTAATTTTCCCATGTAATGGAAAATAAAGTATCAAAAGGAAaccaatgctattttattatgttttcagaattaaaaaaaaaacactaacgtTCTCTGAATAAGCAAGGTTTAGTCATATTGAGTGACTAATTAAACTATGATGTAGATACCTATTGATATAATgttaattagtatttttttaaataattaacttaaTATCAAAGTGAAGGTAGCCCTGATCTGCagtactacacactgatggtgtttTGCTTGTGCCCATTACACACTTTAATGATGCCAGGAGCCAGTAGGAAAGATGTACTTCTTGTGTGATGTGGTAAGAAAGTAAaggtacattttacatttacttctgAAAAGAGTTAAAAGATTTGCTTCCATAAAGGCAGAATTATTCCAAAAGgcagaatttgctgtgtacaCATCCCTAATATATGTACATGCTC

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0072376 protein activation cascade biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0048583 regulation of response to stimulus biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG:

id description
ko04380 Osteoclast differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608330.2 False 1057 mRNA 0.43 9 3884014 3893352
XM_022668925.1 False 1472 mRNA 0.43 9 3885324 3893361
XM_022668926.1 False 1552 mRNA 0.43 10 3885324 3893362
XM_022668927.1 False 1476 mRNA 0.43 9 3885324 3893365
XM_022668928.1 True 1918 mRNA 0.39 10 3884272 3893361

Neighbor

gene id symbol gene type direction distance location
LOC103039858 LOC108426464 coding downstream 13838 3861574 ~ 3870176 (-)
ccdc189 NA coding downstream 44457 3836623 ~ 3839557 (-)
cbx1 cbx1,cbx1b,LOC107677876 coding downstream 54651 3823918 ~ 3829363 (-)
LOC103042441 LOC108426417,LOC107677865,LOC108273677 coding downstream 76996 3802912 ~ 3807018 (-)
mrpl10 NA coding downstream 107829 3770639 ~ 3776185 (-)
LOC103036928 NA coding upstream 194738 4088103 ~ 4097955 (-)
LOC103021465 LOC108426423,LOC108273974,LOC107754115 coding upstream 254823 4148188 ~ 4161856 (-)
LOC103044368 LOC108426474 coding upstream 326102 4219467 ~ 4440792 (-)
atrnl1 atrnl1,atrnl1b,LOC107755548,LOC107689951,LOC107708169 coding upstream 698669 4592034 ~ 4703993 (-)
LOC103022618 cyth1,cyth1b,LOC103022618,LOC108274176,LOC108426518,LOC104925066,LOC107755486,LOC107690912,LOC107684080,LOC107581598 coding upstream 817735 4711100 ~ 4791734 (-)
LOC103038927 NA non-coding downstream 602 3880582 ~ 3883412 (-)
G34218 rnf40,LOC108273672,LOC107743762,LOC107677883,LOC107563784,LOC107565773 non-coding downstream 41287 3840003 ~ 3842727 (-)
G34166 pnpo non-coding downstream 102273 3777900 ~ 3781741 (-)
G34159 NA non-coding downstream 155054 3728642 ~ 3728960 (-)
G34101 NA non-coding downstream 484901 3391629 ~ 3399113 (-)
G34230 NA non-coding upstream 9969 3903334 ~ 3903569 (-)
G34232 NA non-coding upstream 16924 3910289 ~ 3910512 (-)
G34238 NA non-coding upstream 31077 3924442 ~ 3924669 (-)
G34240 NA non-coding upstream 32116 3925481 ~ 3925690 (-)
G34265 LOC108426470 non-coding upstream 109559 4002924 ~ 4003802 (-)
G34214 NA other downstream 545 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 94822 3783125 ~ 3789192 (-)
G34046 NA other downstream 689637 3181168 ~ 3194377 (-)
G33904 NA other downstream 1574685 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1687919 2194757 ~ 2196095 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 1078333 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1362254 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 2010223 5903588 ~ 5928154 (-)
G34770 NA other upstream 2042470 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 2155636 6049001 ~ 6147311 (-)

Expression


Co-expression Network