LOC107197901


Basic Information

Item Value
gene id LOC107197901
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5824388 ~ 5828009 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608337.2
AGAGCTCAGGCTTTACCGTGTTGTTCTGCTACTCTCTTATTTGCTTCTTCCTCAGTATGCAGACAGTCGGCAGCAGGAATCATCTGTATCAGTCATCCACTTCCACACTTCAGCGTACACCACCCTTCACAACTTAACAAATGGCATCACGAGAGGAGGAGCTGTGTTCTGGCTATCTGTACAAGTCTCCTCCAGCAACTCTATTTAAGTCACAGAAGTCATGGAAGAGAAGATTTTTCATTCTGAAGAATATTAAAACTTTCTGCCAGCTGGAATATTTTGAAAGTGAAGAAAAGACCAAGAGTGAACTGCTGGGAGCCATAGACCTCTCTCAagTATCCCTAATGTTGCTGCGTCCTGAGACACACACTATGTGGCAGTGGGTGCATGAACACTTCAAATGCTCTGCAGCTTCTGTTCTTTTCATGAAAGTGGCTGACAGGGACTATTTTTTCATTGGAGAAAACAGCTGGGAGGTAGAAAGATGGTTCCATGCTTTATTTAATGCTTTGAATAGTCGCCCACACAGACTGCTGGATCCTAAGGATTCTGGGGGAATCAGAGACATAAGTGCACCTCCAGAGTCAGAGCACACAGACCACAGAGCTGAGTGGAGGCTTGATGCCAATAAGATCAGCAAAACCGTGCACTGTGTAAGAACATCAAAGAGGGTAAAGTGAAGCAGTAGGAGGGTCATAAGTTTACACACTTCATTGCTACAATCCAGAGAGGTCCTACCTTACAATGTACTGCAGGACTTCAGTGATCTGTGTCTAACAGCTGATGCCAGATACCACAGGATGGCTTTAGGGGGTCTTGGGGAGTCTATGCCTCAGTGGCACAAAGCTTTAAatggttataatgttatggttgatcgGTGTACATACCAATGTGCATAAGGGCTGCATTTTGTGTATAGTACTTTACTGTGaatgtaaagaatgtaaaaattGTACTCATATttgcccttctctctctctcttgagaAACCAATATGTTTGTAAGTAAACCTGTGGTCTGTAAAAAATTCTGTATACATTATGTAAAGTTTGGATTTGGCTTCATATTACTTTTATAGCTCATATGATGAGAAAATCTGAAGTTCTgtagatatttttatttcactgaGTGGCAAACTTTTATTGTACTGGACTGTGTCTTTTTTGTCATGATGTAgttgtattttaataataacagtgtatagtgttttttttttttttttgcagtagcaACGTCATTTAGCATTTCTGTTGCCGTCAAATCTTGTTACACCACTTCAGTAACTGTACAACCTTTCTGcacagattacaaattatacacagtactgtaaacTAGGATTTAGGCAcctgtacatttaaatataaattgttatacaaaaaagttaaatttcAAGACATTAACTGTTTATATTGTCAGTAAACATTAtttgaataaacacaaataactaataaaaaa
>XM_022668961.1
AGAGCTCAGGCTTTACCGTGTTGTTCTGCTACTCTCTTATTTGCTTCTTCCTCAGTATGCAGACAGTCGGCAGCAGGAATCATCTGTATCAGTCATCCACTTCCACACTTCAGCGTACACCACCCTTCACAACTTAACAAATGGCATCACGAGAGGAGGAGCTGTGTTCTGGCTATCTGTACAAGTCTCCTCCAGCAACTCTATTTAAGTCACAGAAGTCATGGAAGAGAAGATTTTTCATTCTGAAGAATATTAAAACTTTCTGCCAGCTGGAATATTTTGAAAGTGAAGAAAAGACCAAGAGTGAACTGCTGGGAGCCATAGACCTCTCTCAagTATCCCTAATGTTGCTGCGTCCTGAGACACACACTATGTGGCAGTGGGTGCATGAACACTTCAAATGCTCTGCAGCTTCTGTTCTTTTCATGAAAGTGGCTGACAGGGACTATTTTTTCATTGGAGAAAACAGctgTACTTTGAAACAGCTTATTGTCTCTTTATGCTGCGATGTTATTCAGGATTCTGGGGGAATCAGAGACATAAGTGCACCTCCAGAGTCAGAGCACACAGACCACAGAGCTGAGTGGAGGCTTGATGCCAATAAGATCAGCAAAACCGTGCACTGTGTAAGAACATCAAAGAGGGTAAAGTGAAGCAGTAGGAGGGTCATAAGTTTACACACTTCATTGCTACAATCCAGAGAGGTCCTACCTTACAATGTACTGCAGGACTTCAGTGATCTGTGTCTAACAGCTGATGCCAGATACCACAGGATGGCTTTAGGGGGTCTTGGGGAGTCTATGCCTCAGTGGCACAAAGCTTTAAatggttataatgttatggttgatcgGTGTACATACCAATGTGCATAAGGGCTGCATTTTGTGTATAGTACTTTACTGTGaatgtaaagaatgtaaaaattGTACTCATATttgcccttctctctctctcttgagaAACCAATATGTTTGTAAGTAAACCTGTGGTCTGTAAAAAATTCTGTATACATTATGTAAAGTTTGGATTTGGCTTCATATTACTTTTATAGCTCATATGATGAGAAAATCTGAAGTTCTgtagatatttttatttcactgaGTGGCAAACTTTTATTGTACTGGACTGTGTCTTTTTTGTCATGATGTAgttgtattttaataataacagtgtatagtgttttttttttttttttgcagtagcaACGTCATTTAGCATTTCTGTTGCCGTCAAATCTTGTTACACCACTTCAGTAACTGTACAACCTTTCTGcacagattacaaattatacacagtactgtaaacTAGGATTTAGGCAcctgtacatttaaatataaattgttatacaaaaaagttaaatttcAAGACATTAACTGTTTATATTGTCAGTAAACATTAtttgaataaacacaaataactaataaaaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0006935 chemotaxis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0009605 response to external stimulus biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0040011 locomotion biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0030030 cell projection organization biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process
GO:0031175 neuron projection development biological_process

KEGG:

id description
ko04340 Hedgehog signaling pathway
ko05217 Basal cell carcinoma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608337.2 True 1455 mRNA 0.39 9 5824388 5828009
XM_022668961.1 False 1428 mRNA 0.38 8 5824388 5828009

Neighbor

gene id symbol gene type direction distance location
casp7 casp7 coding upstream 4391 5807162 ~ 5819997 (+)
LOC103045303 NA coding upstream 52511 5765856 ~ 5771877 (+)
LOC107197899 NA coding upstream 59506 5758072 ~ 5764882 (+)
cpn1 cpn1,LOC107722209,LOC107684044,LOC107702463 coding upstream 140225 5669067 ~ 5684163 (+)
LOC103038312 NA coding upstream 170711 5642317 ~ 5653677 (+)
plekhs1 NA coding downstream 1625 5829634 ~ 5841843 (+)
nhlrc2 nhlrc2 coding downstream 24898 5852907 ~ 5875214 (+)
adrb1 adrb1 coding downstream 59035 5887044 ~ 5891991 (+)
tdrd1 NA coding downstream 76097 5904106 ~ 5948629 (+)
vwa2 vwa2 coding downstream 121535 5949544 ~ 5981217 (+)
G34602 NA non-coding upstream 30570 5788758 ~ 5793818 (+)
G34615 NA non-coding upstream 81944 5739614 ~ 5742444 (+)
G34606 NA non-coding upstream 164486 5659266 ~ 5659902 (+)
G34605 NA non-coding upstream 165189 5658969 ~ 5659199 (+)
G34587 vti1a,LOC107566351,LOC107702459 non-coding upstream 252707 5400955 ~ 5571681 (+)
G34636 dclre1a non-coding downstream 16893 5844902 ~ 5847925 (+)
G34644 ccdc186,LOC107755417,LOC107566113 non-coding downstream 86232 5914241 ~ 5916402 (+)
G34657 NA non-coding downstream 138679 5966688 ~ 5967194 (+)
G34790 NA non-coding downstream 214837 6042846 ~ 6043340 (+)
G34841 tmem235 non-coding downstream 430544 6258553 ~ 6258814 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other upstream 68272 5692522 ~ 5756116 (+)
LOC103025551 sema4g other upstream 899622 4882556 ~ 4924766 (+)
G34309 NA other upstream 1646305 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 2165256 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 3767425 2050742 ~ 2056963 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 418637 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 674136 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 764598 6592607 ~ 6663607 (+)
G34931 NA other downstream 902945 6730954 ~ 6731424 (+)
G35021 NA other downstream 1074408 6902417 ~ 6903997 (+)

Expression


Co-expression Network