Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC103032713 |
| gene name | camk2g1,camk2g,LOC108410509,LOC108273829,LOC107561852,LOC107684098,LOC107690933 |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035900.1 |
| NCBI id | CM008303.1 |
| chromosome length | 25652880 |
| location | 6886709 ~ 6993101 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| camk2g1 | Enables calmodulin-dependent protein kinase activity. Involved in pronephros structural organization. Acts upstream of or within animal organ development and protein autophosphorylation. Predicted to be active in cytoplasm and neuron projection. Is expressed in several structures, including gut; nervous system; neural tube; notochord; and pronephric duct. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human CAMK2G (calcium/calmodulin dependent protein kinase II gamma). |
| camk2g | Enables protein homodimerization activity. Involved in regulation of neuron projection development. Located in membrane. Part of calcium- and calmodulin-dependent protein kinase complex. Implicated in autosomal dominant non-syndromic intellectual disability. Biomarker of malignant astrocytoma. |
| description |
|---|
| PREDICTED: calcium/calmodulin-dependent protein kinase type II subunit gamma-like isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0048793 | pronephros development | biological_process |
| GO:0003146 | heart jogging | biological_process |
| GO:0046777 | protein autophosphorylation | biological_process |
| GO:0005516 | calmodulin binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004683 | calmodulin-dependent protein kinase activity | molecular_function |
| id | description |
|---|---|
| K13412 | CPK; calcium-dependent protein kinase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_015608343.2 | False | 5400 | mRNA | 0.43 | 23 | 6886709 | 6975827 |
| XM_015608344.2 | False | 5873 | mRNA | 0.44 | 25 | 6886709 | 6992912 |
| XM_015608350.2 | False | 5601 | mRNA | 0.43 | 23 | 6886709 | 6992895 |
| XM_015608351.2 | False | 5535 | mRNA | 0.43 | 22 | 6886709 | 6992892 |
| XM_015608352.2 | False | 5513 | mRNA | 0.43 | 22 | 6886709 | 6992894 |
| XM_015608353.2 | False | 5446 | mRNA | 0.43 | 21 | 6886709 | 6992890 |
| XM_022669022.1 | False | 5888 | mRNA | 0.44 | 25 | 6886709 | 6992918 |
| XM_022669023.1 | False | 5683 | mRNA | 0.43 | 24 | 6886709 | 6992918 |
| XM_022669024.1 | True | 6075 | mRNA | 0.43 | 25 | 6886709 | 6993101 |
| XM_022669025.1 | False | 5815 | mRNA | 0.43 | 24 | 6886709 | 6992908 |
| XM_022669026.1 | False | 5800 | mRNA | 0.44 | 24 | 6886709 | 6992917 |
| XM_022669027.1 | False | 5716 | mRNA | 0.43 | 24 | 6886709 | 6992896 |
| XM_022669028.1 | False | 5726 | mRNA | 0.43 | 23 | 6886709 | 6992906 |
| XM_022669029.1 | False | 5650 | mRNA | 0.43 | 23 | 6886709 | 6992893 |
| XM_022669030.1 | False | 5611 | mRNA | 0.43 | 23 | 6886709 | 6992896 |
| XM_022669031.1 | False | 5551 | mRNA | 0.43 | 22 | 6886709 | 6992890 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC103031455 | si:ch73-127m5.2,LOC108426537,LOC107749848,LOC107561855,LOC107684095,LOC108274350,LOC107601426 | coding | downstream | 170970 | 6711314 ~ 6715739 (-) |
| LOC103045903 | LOC108426443 | coding | downstream | 175489 | 6705068 ~ 6711220 (-) |
| bicral | gltscr1l | coding | downstream | 308650 | 6567389 ~ 6578059 (-) |
| LOC103027554 | NA | coding | downstream | 327874 | 6553333 ~ 6558835 (-) |
| LOC103025956 | fscn2,LOC107684083,LOC107722237,LOC107581600 | coding | downstream | 599076 | 6273871 ~ 6287633 (-) |
| sec24c | sec24c | coding | upstream | 9039 | 7002140 ~ 7020769 (-) |
| faap100 | NA | coding | upstream | 76108 | 7069209 ~ 7075841 (-) |
| chad | chad,LOC107706882,LOC107675646,LOC107727306,LOC107552753,LOC107698804 | coding | upstream | 103941 | 7097042 ~ 7104020 (-) |
| armc7 | armc7,LOC107706878 | coding | upstream | 120025 | 7113126 ~ 7115766 (-) |
| LOC103046826 | grin2c,LOC108443561,LOC108273492,LOC107755516,LOC107702470,LOC107684146 | coding | upstream | 179566 | 7172667 ~ 7229961 (-) |
| G34998 | NA | non-coding | downstream | 155210 | 6730942 ~ 6731499 (-) |
| G34997 | NA | non-coding | downstream | 157555 | 6728861 ~ 6729154 (-) |
| G34988 | NA | non-coding | downstream | 205800 | 6680351 ~ 6680909 (-) |
| G34987 | timm23a,timm23,LOC103030206,LOC108426535,LOC107690962,LOC107561858,LOC107684090 | non-coding | downstream | 206755 | 6675579 ~ 6679954 (-) |
| G34939 | NA | non-coding | downstream | 526331 | 6359911 ~ 6360378 (-) |
| G35077 | kctd2,LOC106589267,LOC107706864,LOC108410512 | non-coding | upstream | 41629 | 7034730 ~ 7035818 (-) |
| G35078 | NA | non-coding | upstream | 43160 | 7036261 ~ 7040642 (-) |
| G35094 | NA | non-coding | upstream | 71424 | 7064525 ~ 7066706 (-) |
| G35099 | NA | non-coding | upstream | 84124 | 7077225 ~ 7077629 (-) |
| G35135 | NA | non-coding | upstream | 129382 | 7122483 ~ 7123019 (-) |
| LOC103030829 | NA | other | downstream | 190418 | 6688167 ~ 6696291 (-) |
| G34981 | qki2,LOC103029551,LOC108426533 | other | downstream | 233124 | 6619680 ~ 6653585 (-) |
| ndufaf8 | NA | other | downstream | 340127 | 6543144 ~ 6546582 (-) |
| G34953 | NA | other | downstream | 345345 | 6537021 ~ 6541364 (-) |
| LOC103026268 | bahcc1 | other | downstream | 373008 | 6366684 ~ 6513701 (-) |
| G35429 | NA | other | upstream | 1931727 | 8924828 ~ 8927717 (-) |
| tbata | NA | other | upstream | 1945832 | 8938933 ~ 9003896 (-) |
| G35512 | NA | other | upstream | 2211469 | 9204570 ~ 9205911 (-) |
| rpl38 | NA | other | upstream | 2432974 | 9426075 ~ 9431228 (-) |
| clrn3 | NA | other | upstream | 4060558 | 11053659 ~ 11083182 (-) |
