ccdc189


Basic Information

Item Value
gene id ccdc189
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3836623 ~ 3839557 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608398.2
TGTTGTTGCTAGGATACAGTACAACACAAAGCAATTTACTGACAGTCCTCcgttacatttttgtttagaggGAACGAACACACTGTAGTAAACAGCTGGATTTAAATTTactgtgtttataatatgtCTATCCTTCAACTACAAGGATCAACATGAAGAAGGAAACACTGGAGCCATGCATTCCAAAAGCCAGAGTCCTGTTATGGGCAGACCTGAGTTACAGTGACATGGAGGAAATGGACAAGGCAGATTCAATAACAGACACAGAAAGAATTCTGTGTCGTGCATTAAACTTCGATCTGCCCGAGCCACGACTGGGAATTCTGCTGGAGATGTTCACAAATTTAGTGAGGTTTTGCAGGGAGCAACATTTTAACCGGGAGCAAACATCTGTTCTTCTCTCCATTGTGAAGAATGTACATCAGTTGAACACAGAAACCCCCCTCAACAACATGGACCAGTGCTTTTCCTACTGCAGTGAACTTCTACTTTGTCATTCTGTCAGAAGACCTCCTTTCAGTGTCCATCTTTTTGATGCAGAACAACTGACCCAGATTCTTCAATATCTTACCAACACATATATGAGACACTACAAGCTGTACAAGTACATATTTACACCACAGATGTATTTGGACTTATCATTGTCTTACACTGGAATGCCTGAGGAAGCTGCTTCAGAGGAAGAAGCCAGTGATGAGTATGCTACAGGTGCGGAGAATGAAACAGGGAAGGTGGCAGGCAGTACAAGTGAGGAAACGGCATCAGCAGAAATTCTGACCACAGACACTGAAACACTTCACCAAGGTCCATCCCCAAAAACAGAGCTCCGGACAATCGTGGAAAAAGAAGTAAAGGATGAAGTGATGCGCTTGACAGCTCAGCTAGAAAAACGGCTTCAGGAAAGTACTGATCAGCTAAACACAGCTCTTACTGTGCTGGAGGCTAATATTCGATCTAAGAAGTGACCAATCAACTTCACACCATCTGGGTATTTTATCAAACTGCTGTATTTCAATTTGGAAattatttttcaataaaattCTTTCTTCATAagttattttcattaaaaaaaggtaaatacatATAGTTTTACTCATCAGTAGATTATTCTATCAAAATAGTTGTTTGTCGCAGCCCTATTTTACACCTTAAACATACATgctttataaaactaactataTGGTTTatcaaacaagtaaaaaaaaaaaaaaa

Function

NR:

description
coiled-coil domain-containing protein 189

GO: NA

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608398.2 True 1212 mRNA 0.39 10 3836623 3839557

Neighbor

gene id symbol gene type direction distance location
cbx1 cbx1,cbx1b,LOC107677876 coding downstream 7260 3823918 ~ 3829363 (-)
LOC103042441 LOC108426417,LOC107677865,LOC108273677 coding downstream 29605 3802912 ~ 3807018 (-)
mrpl10 NA coding downstream 60438 3770639 ~ 3776185 (-)
LOC103044690 osbpl7 coding downstream 66131 3749171 ~ 3770492 (-)
LOC103046317 LOC103046317,LOC108426453,LOC107565668,LOC107754097,LOC107677886,LOC108274275,LOC107743772 coding downstream 281404 3545433 ~ 3555219 (-)
LOC103039858 LOC108426464 coding upstream 22017 3861574 ~ 3870176 (-)
LOC103038619 NA coding upstream 44457 3884014 ~ 3893365 (-)
LOC103036928 NA coding upstream 248546 4088103 ~ 4097955 (-)
LOC103021465 LOC108426423,LOC108273974,LOC107754115 coding upstream 308631 4148188 ~ 4161856 (-)
LOC103044368 LOC108426474 coding upstream 379910 4219467 ~ 4440792 (-)
G34166 pnpo non-coding downstream 54882 3777900 ~ 3781741 (-)
G34159 NA non-coding downstream 107663 3728642 ~ 3728960 (-)
G34101 NA non-coding downstream 437510 3391629 ~ 3399113 (-)
LOC111192350 NA non-coding downstream 647187 3107202 ~ 3189436 (-)
G34036 NA non-coding downstream 751217 3060369 ~ 3085406 (-)
G34218 rnf40,LOC108273672,LOC107743762,LOC107677883,LOC107563784,LOC107565773 non-coding upstream 446 3840003 ~ 3842727 (-)
LOC103038927 NA non-coding upstream 41025 3880582 ~ 3883412 (-)
G34230 NA non-coding upstream 63777 3903334 ~ 3903569 (-)
G34232 NA non-coding upstream 70732 3910289 ~ 3910512 (-)
G34238 NA non-coding upstream 84885 3924442 ~ 3924669 (-)
prr15l prr15l other downstream 47431 3783125 ~ 3789192 (-)
G34046 NA other downstream 642246 3181168 ~ 3194377 (-)
G33904 NA other downstream 1527294 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1640528 2194757 ~ 2196095 (-)
G33823 srcap other downstream 1659564 2169023 ~ 2177059 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 1132141 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1416062 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 2064031 5903588 ~ 5928154 (-)
G34770 NA other upstream 2096278 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 2209444 6049001 ~ 6147311 (-)

Expression


Co-expression Network