foxi2 (foxi2)


Basic Information

Item Value
gene id foxi2
gene name foxi2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 11040698 ~ 11042893 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608531.2
GTCAGTGTGGATCAGAGAGTGTCCGGTTCGGTTCTTCTGAAGTTTATCCGGGAGATGTTTGTGGAAGGAGAGCGGATCATGAGCGCCTTCGGGCCGCAGGCGGCGGGTCAGCAGGGCGGCCACAGCGCGCAGGACCTGCTGGACGTGTCGGTCTACTGCGACAACTTCAGCGCCTACcagcaccaccatcaccatcatcatcaccatcaccagcagcaccaccaccagaaccagcaacagcagcagcagcaccacgcAGTGCACGCGCCCAGCTACGGCCTGGGCGAATATGCGCCCACGTCCACCGGCTCCGGCACCACCGGCGCGCCCAGCGCCCCCAACCCGTACCTGTGGCTGAACGGCCCAGGGATCAGCCCTTCTCCCTACCAGTACCTGCAGACGGGCTACAGCGCGGGCCAGCGGCAGCTCGTGGCGCCTCCTACAGGGTTCGCGGGCGCAGAGCTCGGGTGGCTCTCCGTGTCCAGCCAGCAGGAGCTCTTCAAACTCGTGCGCCCACCTTACTCCTACTCGGCCCTCATCGCCATGGCCATCCAGAACACGCGCGACAAGAAGCTCACGCTCAGCCAGATCTACCAGTATGTCGCTGAGAACTTCCCATTCTACAAGAGGAGCAAAGCGGGCTGGCAGAACTCCATCAGACACAACCTGTCCCTCAACGACTGCTTTAAGAAGGTGGCGCGCGACGAAGATGATCCAGGAAAAGGCAATTACTGGACTCTGGACCCAAACTGCGAGAAAATGTTTGACAACGGCAATTTCCGGCGGAAGAGGAAGCGCAGGGCAGATGCAGTCAAAACCGAAGTTTCTCCGGTGGATTCTCGTACCGGCAGCACGAGCGCAACCCCGTCTCCGCGAGGCCTCGGTACCTCTCCATCCGCGAGCGAGCCGCGCTCCCCGCAGTCCCCGGAACTCAGCCCATGTTTCGACAGCTTCGTGAGCCACGTGAACACCGTGCTGGGCGGTAACGGCGACGGAGCGCGCCCCGGACCCGGCACGCGCTCTCCAGTACTCAACCACGGGAGGCTGGGCAGTTACTACACGAGCGCGGGCGGGTTCAGCAGCTCCCTGTCTAATCACTTCAGCGTGGACAGTCTGATTTACAACCGCGAAGGAACTGAGGTCTAACTGCGGTTCAGTTATGTTTACGTTCCGGATCACCAGAACCACCAGGATCACCAGACACGTGCGCTGGGAATCACCACTGGAGCTCAGCATCCTGTGATCGAACTGGAAGTTTCCCAATACCATAACGAACATGAACATCGTTTGAACATCATGAACATCATCAAACTTTACCTTTTCTCCCAcgaggagggaaaaaaagaaaagtagaccTCGCGCTCTGTGAGCGCACATATTATTTTTTCACAATTCTTTGTTCTATAATTTTGTTATGTATACAGTTGTTTATCACAATACTAAACAGTTGCACTGctctgtaaatactgtacaaaCACGTTCATATCCTTCAGTTTACACATTTAGcccaaaatgcattttattttcattggcTAACACCTGTTACACCTGCAAGCATTATTGGGTGTCCAGAATCTGCAACATTTtgtaactttttaactttttttgtaaatgaatgttgatatatttttatttaatgaattttgtaaataaactgtGTTATAAAATCTAA

Function

symbol description
foxi2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within camera-type eye development. Predicted to be located in nucleus. Is expressed in ciliary marginal zone; optic furrow; pharyngeal arch; and retina. Orthologous to human FOXI3 (forkhead box I3).

NR:

description
forkhead box protein I1c-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0043049 otic placode formation biological_process
GO:0009957 epidermal cell fate specification biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09401 FOXI; forkhead box protein I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608531.2 True 1672 mRNA 0.54 2 11040698 11042893

Neighbor

gene id symbol gene type direction distance location
trim65 trim65 coding upstream 554900 10476390 ~ 10485798 (+)
LOC103039374 NA coding upstream 598760 10437323 ~ 10441938 (+)
cdc42ep4 NA coding upstream 616453 10385012 ~ 10424245 (+)
LOC103040920 sdk2,sdk2b coding upstream 667357 9829485 ~ 10373341 (+)
LOC103043335 npffr1 coding upstream 1773102 9220731 ~ 9267596 (+)
ptpre ptpre,LOC103359937,LOC107387775 coding downstream 141997 11184890 ~ 11217372 (+)
glrx3 glrx3,LOC107745700 coding downstream 1030470 12073363 ~ 12094731 (+)
jakmip3 jakmip3 coding downstream 1561064 12603957 ~ 12664928 (+)
dpysl4 dpysl4,LOC107653119,LOC107706606,LOC107582189,LOC107654562,LOC107568139 coding downstream 1628652 12671545 ~ 12692068 (+)
LOC103039392 chmp6b,chmp6,LOC108429718,LOC107749864,LOC107684156,LOC107755461,LOC107690936 coding downstream 1661445 12704338 ~ 12710368 (+)
G35810 NA non-coding upstream 192327 10847887 ~ 10848371 (+)
G35794 NA non-coding upstream 306691 10733778 ~ 10734007 (+)
G35748 NA non-coding upstream 552645 10487115 ~ 10488053 (+)
G35677 NA non-coding upstream 957610 10081497 ~ 10083088 (+)
G35645 NA non-coding upstream 1080831 9959325 ~ 9959867 (+)
G35825 NA non-coding downstream 35979 11078872 ~ 11079443 (+)
LOC103033033 NA non-coding downstream 47399 11090292 ~ 11264386 (+)
G35832 NA non-coding downstream 71756 11114649 ~ 11200184 (+)
G35833 NA non-coding downstream 111006 11153899 ~ 11159812 (+)
G35834 NA non-coding downstream 113483 11156376 ~ 11264980 (+)
dock1 dock1,LOC107740868 other upstream 38893 10747637 ~ 11001805 (+)
G35744 mrpl38 other upstream 564915 10471380 ~ 10475783 (+)
LOC103024481 adamts14,LOC103367006 other upstream 2189306 8719354 ~ 8851392 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 2567709 8442132 ~ 8472989 (+)
fasn fasn other upstream 2601833 8386173 ~ 8438865 (+)
G35903 NA other downstream 758565 11801458 ~ 11802204 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 1068797 12111690 ~ 12566941 (+)
G35967 NA other downstream 1323647 12366540 ~ 12370962 (+)
G35995 NA other downstream 1659412 12702305 ~ 12703056 (+)
LOC103039668 LOC108435045 other downstream 2459353 13502246 ~ 13520702 (+)

Expression


Co-expression Network