josd1 (josd1,LOC107660868)


Basic Information

Item Value
gene id josd1
gene name josd1,LOC107660868
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1879258 ~ 1889279 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668889.1
GACCAAGGTGATTTTTCTACATGACTGGAGTTTATCTACTGCACAACACAGACCCTGGGGACATTCCTACAATCACCTGGATGTGTTTCACTGgatctcttgctctgtctgatctggaTCAACATGGAAAGAACTGCACTGTGCTAGTGGCCACTTTGGTCTTCCGCAGCAGCAGCTCTACCCAAGCAATCCATATGGAGAACATAGATATAGGATACAGGTGCTGATCTGAAGAAGAACATTCCACTCATTTATCATTGGCTGATATTTTCTTCACTTTCAGCCACATACTCTTGAGAGATACTTTGAAGTGGCTTTGCATCTCTCACTGTAGCTACCTTCCCCTCCCCTTGCCACACGCTTAAAGCAACTGGGTGGCTGCTGAGGAGATGAccgtggtggtggtggtgttgtagTAGGAGCAGCAGGGATGGGGAGCACTCCATGTTCTGGTAAGGGGAGGGGGGTAGGAGGTTTTCAGGAGCTGGGCTGTATGCCATGGAAGGTGAGCAAACAGAAAGGTGAGGCTGCTGGAGGTGGAAGTGGCCCAGATGCAGAAGAAGGGCCAAATGCCAGGACACCTCCACCAGCTTCTCGGCCCCCTGACATCTACCACGAGAAGCAGCGTCGAGAGTTATGTGCTCTGCATGCACTAAACAATGTCTTCCAGGACGGTGCTGCCTTCAGCAGAGATGCACTTCAAGATATCTACCAGAGACTCTCCCCCAGCACTTTGGTAACACCACACAAGAAGAGCATGCTGGGTAATGGCAACTATGACGTCAATGTCATTATGGCTGCGTTGCAGACTCGTGGGTTTGAAGCTGTCTGGTGGGACAAAAGAAGGGATGTTTGCAGCATTGCACTGCCAAATGTAACTGGCTTTATTTTGAACGTGCCATCCAACCTGCGCTGGGGGCCCCTGCGTCTGCCACTCAAGCGGCAGCACTGGATAGGAGTGAGGGAGGTGGGCGGAGTCTACTACAACTTGGACTCCAAACTGCGTAGTCCTCATGCTATTGGAACAGCTGATGAACTCagGAAGTTCTTGCGTCACCAGCTTCGAGGGAAGAACTGTGAACTCCTGTTGGTTGTGCCTGAGGAGGTGGAGGCCCACCAGACTTGGAGGTCTGAAAACATTTGAATCTGTCTTATAGCTTTCTGGGATTCTTCAGCTCATGCTCAGGAGGGAATGTAAGGTTCAATCAGGGAACCATATAAGAGCAAATGGAGTTGCACTCAAGCAGTCACAAAAGCACACACAAGGCCAGACCttttgtttacacacacacacacaccacacacacacaaatacagaaacacaaaatGCTGGATTTGGActaaaatggctaaaaaagGACAACACAAACAGGGATCTCACATTGTAACACTACTCTGTCCTATGAGAACTTTGTTGAGTCATTTGGGATtctgatgcatttttttaatatgtaagtTCATTTTGTTTCATACTGTTTCCACTCTTAAGAAGAGATGTATGAAATGATCAGTGATGCATTCTCTGTGTACATCACTGTTCCACTGTCAGCTCTATATTATTCTCCATGTGACTATCCTTGTGTTCATGTGATCGCATAAGATCCTTCGCCATGCACCTCAACCTCTTTTCTCACAGTGAAAGGTGTTTGTGTGGCCAGCAAGCTTCTGGCAAATGATGTAGAAAAGGAACATGAAGCACCCTTGCCTGCCTGCAGTTTATGCATTGTTTAATAATGTAGGAAGTAATGAATAAGAAGTATCTAAACCAGTACAGCATGGCACAATAATAACTGGATGTTTTTTGTTAGGTCTCCCATAGAATAAGTCAAAGTAAAGCTATCACCTGTGGTCTTATGTTACACCCGTCCTACCTGATGGATATAAGTCTTCTCTTCAGAAAGATGGTTCATGCCTTATAAAGATTATTCAGCGTAGATACCGAAAGATATATCCTTATGTCCAACTGCCAAAcagtctgtactgtattttgaaTGGTTCTCAGAGTGTTTTTGATAATAAGGGACTTTTAATTTTGAAACTGGCAATATgactgaaactgaagtggtaggAAAGGTGGAACTTTAAGAATGAGATTAGTGAAGAGGATAAAGGGGCCTTTTGTTAAAGTTGTTAAACGGGTGCAGtccatgaaatataaaaaaaaattgacaggtCTTTTATTTAGTGCTGGATAATAAAGCCAACTTTACAACACTTTTCTTTGATTTAGGTTAATCAatctgtatatactgtttattgaGGGAGCAGATAGTAATGTTACTCCAAAGGGAAAGGCCCTTTGAGTACTCCTCAGGTTTTGTCCCATCACTCACATTTAACTCAGTTCCCTGCTGGATGTAAAACGAAACGACTCTTCTGCAGCCCAACCTAAATGCCCAATCCTGTTAATGAGAAACTAAATCttgatgtaaaaaaaggaacattccacatttacacacacagggTGTTTTGTAAAATTGTAGAAGTGTTTTGATTTCTTTGCCATGACAATCTCAACCCCCTCAATCCCCACCCTGCATCCCTTTTCAGGGGACGTACAGTCCTGACGTGATCACGCCATTGTTCGTTTCCCATGCAAATGCTTGTAAAGGCACTTTATGTATAATCCAAGATGTGCTGTGACAtcattaaaatgtctttatatgTACAAGGA

Function

symbol description
josd1 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Orthologous to human JOSD1 (Josephin domain containing 1).

NR:

description
PREDICTED: josephin-1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008242 omega peptidase activity molecular_function

KEGG:

id description
K15235 JOSD; josephin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668889.1 True 2674 mRNA 0.44 4 1879258 1889279

Neighbor

gene id symbol gene type direction distance location
cbx7 cbx7,LOC103382143,LOC107554058,LOC107660863,LOC107584093,LOC107709653,LOC106608943 coding downstream 1049 1870610 ~ 1878209 (-)
LOC103040308 NA coding downstream 41974 1825489 ~ 1837284 (-)
LOC103044468 NA coding downstream 125715 1745216 ~ 1753543 (-)
LOC103043761 NA coding downstream 125744 1749204 ~ 1753514 (-)
LOC103042940 map2k4,LOC108424869,LOC108274195,LOC108433489 coding downstream 137783 1729023 ~ 1741475 (-)
LOC103046112 NA coding upstream 992 1890271 ~ 1895993 (-)
xrcc6 xrcc6,LOC107709651,LOC107554059 coding upstream 8906 1898185 ~ 1904629 (-)
LOC103047336 LOC108444256 coding upstream 88335 1977614 ~ 2017175 (-)
LOC103022929 slc16a6,LOC108444260 coding upstream 166821 2056100 ~ 2066246 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding upstream 185351 2074630 ~ 2087567 (-)
G33693 LOC108413510,LOC108273944,LOC100698988 non-coding downstream 15746 1862786 ~ 1863512 (-)
G33690 LOC108413510 non-coding downstream 21543 1856968 ~ 1857715 (-)
LOC111192345 NA non-coding downstream 152001 1720811 ~ 1727257 (-)
LOC111192344 NA non-coding downstream 158812 1718648 ~ 1720446 (-)
G33545 NA non-coding downstream 704603 1174440 ~ 1174655 (-)
G33731 NA non-coding upstream 86550 1975829 ~ 1976108 (-)
G33732 NA non-coding upstream 87050 1976329 ~ 1976585 (-)
G33759 NA non-coding upstream 185056 2074335 ~ 2074606 (-)
LOC111192348 NA non-coding upstream 191696 2080975 ~ 2083243 (-)
G33804 LOC108444266 non-coding upstream 238988 2128267 ~ 2130172 (-)
G33675 NA other downstream 66636 1810586 ~ 1812622 (-)
LOC111192416 NA other downstream 1477946 389434 ~ 401312 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other upstream 132792 2022071 ~ 2042303 (-)
G33823 srcap other upstream 279744 2169023 ~ 2177059 (-)
G33836 LOC103393566,LOC105888730 other upstream 305478 2194757 ~ 2196095 (-)
G33904 NA other upstream 413983 2303262 ~ 2309329 (-)
G34046 NA other upstream 1291889 3181168 ~ 3194377 (-)

Expression


Co-expression Network