cacna1g (cacna1g)


Basic Information

Item Value
gene id cacna1g
gene name cacna1g
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2730484 ~ 3069831 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668920.1
AGCTGTGAGTTGGTGTGGATGAGCGAGCGGCTTGGTGCTGGAGATGAGAGCGTGTTTGCCGAGTAGAAGAAATGGGagaatttggtttattttattggaGTGAAGCACGAGCTGCTCGCGCCTGAGCTCgcgctgctaaaaaaaaaagactgagcAGACCGAGGAGACTGAGAAGACTTTATCATGTGCCTGTTAGAGAGAACGAGACCTGGCTTTTAGGAGAAAACACACTTTTACTGGATTTTAAGTAGCTAATTTAGCTGGAGATGTGAGAGTTTGGTACTGTAGAGCATCGCTGAGAAACTCAGTAATTAGTGCacgttgttttttgtttgtgtgtgtttttctgcgCGCGCGGCtcctgtttttctgcagtttTGAGGGAGTTGCTCTCTTGCTCTCAGTCAGAAGcagagggagaagagagagggaagcCCAGCATCCTGAAGGAGGGAAGAGAGCATCGTGTGCAGCAGGCACGGCTGGACTGAGCTGAGGCTGCCATGCCCGTCAGgcttattttactgtaaacttAGCCTAGAGAGAAAGCTCCACTTTCtcaccacagaaaaaaaacaacctggGCTACTTTTCCTGTCTGCACAAATGCTCATGCGATGAGTGAGTTCCGTCTGGGCTTATCAGCAGAAGCAACTACAGGAGGTGAATGATGGCTGAGGATGGAGGAAACATTTGCGAGGACCACACAGACAGGGAAGCAGAGGGCAGGTCCTCTCTTCCTCGGACTTTTATCCGACTCAATGACCTGTCCGGTGGCGGGGAGCACGCCGAGCAGGAGGGGGCCGAGCAAGGAGCAGAGAGGAGGGAGAGTGCAGCCGACACGGTGGCGGAGGAGGTGACGGAGGAGGCGGCGTCTAACAGCGGCGAGGAGGCTTTACCCTACCCCTCACTGGCACCGGTTGTGTTTTTCTATCTGAAGCAAACCACACGCCCCAGGAGTTGGTGTCTGAAAATGGTCTGCAATCCATGGTTTGAGCGTGCCAGTATGCTAGTGATCCTGCTGAACTGTGTGACTCTGGGCATGTTCCACCCATGTGAAGACAGTGACTGTGACTCCGAGCGCTGCAAGATCCTGGAGGACTTTGACGACTTCATCTTTGCCTTTTTCGCTATTGAGATGGTGATTAAGATGGTGGCACTGGGCATCTTTGGCAAAAAGTGTTACCTTGGAGATACCTGGAACCGGCTAGACTTCTTCATTGTGTTGGCTGGgATGCTGGAATACTCTCTCAACCTGCAGAATGTCAGTTTTTCTGCTGTTCGTACTGTCCGAGTGCTGAGACCTCTCCGAGCGATCAACCGAGTGCCAAGTATGAGGATCCTCGTCACTCTCCTGCTGGACACTCTCCCCATGCTGGGCAATGTGCTGTTGCTCTgcttctttgtctttttcatcTTTGGGATTGTGGGGGTCCAGCTGTGGGCGGGGCTTCTCAGAAACCGCTGCTTCCTTCCTGAAAACTTCTCCCTtccCCAAACTCTAGACCTCCACACCTACTACCACACGGAGAACGATGACGAGAGCCCGTTCATCTGCTCTCAGCCGCGGGAGAACGGCATGCGGCAGTGCAGCTCCATACCCATGCTGCTGGAGGAGACTGTGCAGTGTCACCTGGACATGGGAGCCTACAACACCACAGACAACACCACCTGTGTGAACTGGAACCAGTACTATACCAACTGCTCCGCTGGAGAGGTCAACCCCTTCAAGGGGGCCATCAATTTTGACAACATTGGCTATGCCTGGATTGCCATCTTTCAGGTCATCACTCTGGAGGGCTGGGTGGACATCATGTACTTCGTGATGGATGCGCACTCCTTTTACAACTTCATCTACTTCATCCTGCTGATCATAgTGGGCTCCTTCTTCATGATTAACCTGTGCCTGGTCGTTATTGCCACTCAGTTCTCGGAGACGAAGCAGCGCGAGAGTCAGCTGATGAAGGAGCAGCGAGTGCGCTTCATGTCCAACGCCAGCACTCTCGCCAGCTTCTCAGAGCCTGGCAGCTGCTATGATGAACTCCTCAAATACTTGGTCTACATTGTGCGGAAGGGCACCAGACAGCTGGGTCACCTGGTCCGGGCGGCCGCACGTCGGGCGGGCCTGAGGGTGCGCGCCTCCCCTGTCCTGGAGCCTCCAAACACCAAGAGACAGAGGCAGAAGCAGCGGCAGGGCTCCATCCACCACTTGGtgcaccaccaccatcaccaccaccaccaccactaccatcTGGGTAACGGAAGCATCCGCAGCGATAGGACCAGAGAGTTAGAGATGTATAACCGTGCGGGTGCAGGTTCAGGACGCCTCACTCTGCCTTCAATTACCCCTCTGCCGGACCCCTCGTCCAATCCCTGCCCTGCGGCTCTGAGCCCCGGCAGCGCTGAGTCGATACACAGCATCTATCACACGGCTTGTCACCTGGAGCCTCTGCACTGCAACCCCTCACCCGGACCCTCAGCCCTGCAGGCCTACAAAAGGAACTCTGTGCCATTTGCAGCACCTGCACACAAAAACTATCCCACGCTTCAGCCCTGCCTGCCTCTGGAGCACCTGAGACAGAGGAGTCTGGAGCCCGGAGGAGCCAGCTGCACCACCAGCGCCCTCACCAGCCTCAACATCCCACCAAACCCCATCAACACCTCCCAGTGCCTGCTGGACCCACAAGGGCCTGCTGGCAAGTTCCCGCGCAAGTTCTCCAACACCAACTGCAGCGGCACGAACTTGGATGTTAGTCTGGCCTTTGACCCCGAGACCTGCCCTTATTGTACTAAGGCAGCAGCTAATGACTCAGAAGGTACTGAAGCGAACGAGACCGCAGACTCAGACAGTGAGGGGGTGTACGAGTTCACCCAAGATGCCCACTATCGGGACAACAGAGACCCCAACAAGAAGCGGAAGTTTAAGCTCGGGGCTCGAGCTGCAAAGGTGGTCCACTTTTGGAGACTGGTGTGTGACACTTTTCGCAAGATCGTGGACAGCAAGTACTTTGGACGAGGCATTATGATCGCCATCCTCATCAACACACTCAGCATGGGCATTGAGTACCATGAGCAGCCTGAGGAGCTAACCAATGCCCTGGAGATCAGTAATATAGTCTTCACCAGTCTGTTTGCTCTGGAGatgctgctgaagctgctggtgtatGGCCCCTTCGGCTACATCAAGAACCCCTACAACATTTTTGACGGCATTATTGTGGTGATCAGtgtctgGGAGATTGTAGGTCAGCAGGGTGGAGGCCTGTCTGTGCTGAGGACCTTCAGGTTGATGCGAGTGCTGAAGCTGGTGCGCTTCATGCCGGCTCTGCAGAGGCAGCTGGTGGTCCTGATGAAGACGATGGACAACGTGGCCACGTTCTGCATGCTGCTCATGCTCTTCATTTTCATCTTCAGtattttaggtATGCACCTGTTCGGTTGTAAGTTTGGCTCTGAGAGAGATGGGGACACATTGCCGGACCGCAAGAACTTTGACTCTCTGCTCTGGGCCATTGTCACAGTATTTCAGATCCTCACTCAGGAGGactggaataaggtgctgtatAACGGCATGGCCTCAACCTCTCCTGTGGCTGCCCTGTATTTCATCGCTCTTATGACCTTTGGGAACTACGTCCTGTTTAACCTGCTGGTGGCTATCTTGGTGGAGGGCTTCCAGACTGAGAAAGGCCACGTGGGAGTGAGGAGGCAGATAGCCCAGCCTCAGCAAAACAGGGCTTCCCCCCTGCCCGCTCCATGCTGGCAACCTGAGCCACCTCCAGGGCCCAGCAGCAGTGGGCAAGTTGGGGACGCCTCCAAGTCTGACTCGGAAGCGGACTTCTACGCGCGGAGCATTGATGACGTGCGTGGAAGCAAAAAGGATGTGTCTGCTTCTTCTGTCGTGCCCATCAATGGTCATGTGGATCTGAAGGCCAGCCTCACGCCACCtctcatcacacacactgctgccacaCCCATGCCTGTCCCTAAGATCTCAGGAGGAGGAGACCCCACGCTGGGCCAGGAGTCCCGAAGGGGCAGCAACGTGTCTGTGGATCCCAGCTGCCAAGAGAAGTCTCCGTCGAGTGCTCGGAGTTCCCCCCATGCCCCCTGGAGCTCAGGCAGCAGCTGGAACAGCCGGCGGTCCAGCTGGAACAGTCTGGGCCGGGCTCCCAGCCTGAAGAGGCAGAAGCATCAGTCTGGAGAACGCCGTTCCCTGCTCTCCGGAGACGGACAGTCCAGCTCGGACGAGGACGGGGGCAGGGTGGGTGGAGGAGCCTCGGAGGGGGACGATGCCTCTCCCAGGACAGACTCTTTTGGCCAGAGGCCTCGGCACCGGCGCATGGAGTCCCTGGAGACCCGCAGCTCCTTCGACCTGCCGCCGGACACTCTGCAGGTCCCCTACCTGCACCGCTCAGCCAGCATCCACAGCACACGCCCACCCAACCTGCTCAGCAACGGCAAGAGCTCTCCCACAGGAGCCACCACTCAGCTCTCACTGGACGACCACCACAGCGAGGACGACAACCCTGATGAAGAGGGAAACCTGaGTCGGCGAGCGCGTCTGTACCGCTGGTTCGAGAGGAAGCAGCCTGAATGGTGTCGGCAGAGGGGCACCTGGTCCTTGTACCTGTTCCCTCCAGAGTCCAAGTTTCGTGTGACCTGCAATAAGATCATCACGCACAAAATGTTCGACCATGTGGTCCTCGTTATTATCTTCCTCAACTGCATCACCATTGCTATGGAAAGACCCAGGATTGAATCAAGAAGTGCTGAGCGCATCTTCCTGACGCTGTCCAACTACATCTTCACTGCCATCTTCGTgactgaaatgacaataaaggTGGTGGCCCTTGGTTGGTGTTTTGGGGACAAGTGCTACCTGAAGAGCAGCTGGAACATTCTGGACGGCATGCTGGTGATGATCTCCGTTATCGACATCCTGGTGTCTCTGATCTCCAACAGTGGCACTAAAATTCTTGGCATGCTGCGAGTGCTGAGGCTCCTGAGGACCCTGCGGCCCCTCCGGGTGATCAGCAGGGCTCCAGGGCTCAAACTGGTGGTAGAAACACTGATGTCGTCCCTCAAGCCTATCGGAAACATCGTGGTCATCTGCTGTGCCTTCTTTATCATTTTCGGCATCCTCGGGGTTCAGCTGTTCAAAGGGAAGTTCTTTGTGTGCCAGGGGGAGGATATAAGAAACATCACAAACAAATCTGACTGCCTGCTCGCTAAATACAAGTGGGTCAGGCATAAATACAACTTTGACAACCTGGGGCAGGCCCTGATGTCTCTCTTTGTACTGGCTTCTAAAGACGGCTGGGTGGACATTATGTATGATGGACTGGATGCTGTAGGAGTTGATCAGCAGCCTATTATGAACTACAACCCCTGGATGCTGCTGTATTTCATCTCCTTCCTCCTAATCGTGGCGTTTTTCGTGCTCAACATGTTTGTTGGAGTGGTGGTGGAGAACTTCCACAAATGCCGGCGGCACCAGGAGGCAGAGGAAGCCAAGCGGCGCGAGGAGAAGCGTCTAAAGCggatggagaaaaagagaaggaATATAATGATGACGGGTGTCAGTTGGCCCAGTCCCGAAGGCGGAGTGACAGAAGCTCAGAGTAAGCCGTACTACTCGGACTACTCGCCGACTCGACGCCTGATCCACAAGATGTGTACCAGCCACTACCTGGACCTCTTCATTACCATCGTCATCGGACTCAACGTCATCACCATGTCCATGGAGCACTACCAACAGCCAAGGGTGCTTGATGAAGCCCTGAAAATCTGCAACTACATTTTCACCGTCATCTTTGTCCTGGAGTCGGTTTTCAAACTGGTGGCTTTTGGCTTTCGCCGTTTCTTCAAAGACAGgtgGAACCAGTTGGATCTAGCCATTGTCCTGCTGTCCATCATGGGAATAACTCTGGAGGAGATAGAAGTCAATGCCTCGCTCCCCATCAACCCCACCATCATCCGCATCATGAGGGTGCTCCGCATTGCCCGTGTGCTGAAGCTCCTGAAGATGGCAGTGGGAATGCGGGCTCTGCTGGACACAGTCATCCAGGCTCTGCCTCAGgtGGGGAATCTGGGTCTTCTCTTCATGCTTCTCTTCTTTATCTTCGCAGCACTGGGAGTAGAGCTGTTTGGTGACCTGATATGTGATGAACTGCACCCTTGTGAAGGCCTCGGCCGCTACGCCACGTTCAAAAACTTTGGCATGGCCTTTCTCCTGCTGTTTCGCGTGTCCACCGGGGACAACTGGAACGGCATCATGAAGGACACCCTGCGAGACTGCGCTCAAGAGACTGGAACTTGTTACAACACAGTGGTGTCTCCCATCTACTTCGTGTCCTTTGTGCTCACGGCTCAGTTCGTGCTGGTCAACGTGGTGATCGCTGTCCTCATGAAACACCTAGAGGAGAGCAACAAAGAGGCCAAAGAGGAGGCGGATATGGAGGCGGAGCTGGAGCTTGAGGCAGTAGGTGGAGATGGGGGGCTGATGAGTGGGGGGCATATCTCTCCTCCAGTCATTGGGGACATAGTGGGGTCTAGAGGGTCTCCCTGGATCTCTAGAGGCTCTCAGGACAGAGGTTACCCCACTGACAGCCCACCAGCAGACATACGCAGAGACTCAGCAGCACACATAAAGACTGACCCACCTCTGGAGTGTCTGGGGCCACCATTAGAGCGGAGGCCCATGTTTGACTCGGTATCCCTGGTGATCCAGGGCTCGCTGGAAGGAGAGCTGAGCCTTATGGACAACCTGTCCGACTCCATCTGCCACTACTACGCTCTGCCCCCTCTCCCCAGCAAGCACAGCACTGATAAACAGATCCCCCTAGCGGAGATGGAGGCTCTATCTCTGGCATCGGAGAAATCCTGGTCCTTAGCTCTGACGGACGACTCCGTCCCAGATGATTTTAACCCCCCCTTACTAACCAGTCTGGAGTGCAATATCGCAGATCCTCTGGGACCTGTGCAGCCACATGAACCTCTGGAGGAGCACCTGCTGTGTGTAAAGAAGACGACAGTTGGGCGAACTCACTCCTTACCCAATGATAGCTACATGTTCCTGCCCTTGCAGGATACTGTCAACACCTCCACAACCCTCACAACCTCAGTTCAGCAGGCTCAGTCAGGTTCCAGTGGATCTGTTAACTTTCACACAGAAGATCCTTCCCAGCACCTCACGGTGCCCACAGAGCTGTTCCGACCCATCAGCCCCCACAGCCTGTCTGATTCCGAGAGTATCCCTCGCATCCCACCTCCTCGTCGACACACCTTCTCACGCACCCTTCGTAGACAGGTGGCAGTGAGTGCTGACTCTCAGGAGGCTCTGAACGTAGAAGGCGGGGAGAGTGAAGGGTCTGCTTCTGCTGAACTCTCTGCGCCTCCTGCCAATTGCCCGGCTCCTCTACAGAGGCAGCAGCATCGGCCTTCTCTCCTCCTGGTCCCTGCCACGCCGGGCGCATCACCAAAAGCATCACGCTCCAGTGTACACACGCAGCACAACCCCTATGACCAGTACAGCGTCTCCTCCAGATGCCCTcgctctcctccaccaccaccactaccatcACATCTTTCCAGGAGTGCAAAACCTTCTGGGAAACAGCAGGAGGAGGACTCAGTGGATCAGGAGGTATCTCACATCATCAGGACAGGGTTCAGGGGTGGCAGTGACAAGGATCTAGAAAGAGGGAGCCTTGGAGTAGGGCTTGCTGGTGATCTCGGAGAAAGCCTTGGAGTAGGACTTGCTGGAGCACTTGGAGAAAGGCTTAGAGGAGGACTTGGGGAAGGATACGGAGGGGGAGGGCTGCCCACGGACAGCCGTGGACCTTGTCTGCGGCAGTTGAAGAAGCATCACAGTGCGGACGCTCAAGGCCACCGAGTTCCCTTGCTGCCCCGGCCCTCCTCCTGGCTGGACGACCCACGGCGCCATTCCATCGAGGTATGCTCTTCAGTAGAAAGCAGCCCCCAGCGTAGCTCTGCTTCCTCTGGCTTCGTCTCTCGTGCCGGCAGCCTGCAGACCTCTCAGCCCTCGCCCCACGCTCGCAAGAAGAAGATGAGCCCACCGTGCATCTCAGTGGACCCCCCTGAAGGACCAGAGGTTCAAGGGAACTTCCGTGCAGCGCTGAGCTTGGGAACGGtggctcctcctcctctgccCAGCAGGGACACCTGCCTAAGGAGGCGAGCGCCCTCCAGTGACTCTAAGGACTCTTTTGATCTGGGTGGAAGTGGAGGAGGAGATGGGCTGCCACAAGAGGGGGTTCCCAACCCCAAGCTGTTGACTCTGCCCAGCTTCTCCTTTGAGAAGTCAAGCTCTGAGCATTGAACATTTgcgcacgtgcacacacacacacacaaaaaaaaaacacacacagatgcacatgAATAAACACAAGATGCACTCTGTGTATCCACACCAGTGATAGTCATAGTAATAATACCATAGAGAGTAATAATGCTATCTGCAACAACGATGAGTAAGTACTCCATGACTCCACGAGGAATAGTGACCATCCCTTGTCTTTGTTCTGTACTgccaaaaagaaaacaacactGTACTGAGGACAAACCAAGCTAATAACAGAACTGTCTCTCTTCCACGATGCCAGCAGACATCGTTCGCTGGCGATCATAAGGTACCAGCATCCAGACGGGCGCCCATTTTTCTGGCTGTTTTGTTGACTTTATAGCACTGTATGGTGGAGCATCTCCCCCGAGAGCAGTGGTGAAGGTACAAAGCAATATGAACGTTTTAGAGACActattttcttaaattattgGGCCATAGTGTTTGTACAggatgtagatttttttttatttcattctatttttatttgtgtcttTTTGTGACTTTTCAATGTTTAAAATCGTTTGTtgtctttgctttattttttcaccataggatatttttagctttcttgttttaacaaatgaacaaacaaagaaaaaaagaaaaacatttttcaaagtGCCGAGATCCATGTATTTgtagtaataatatatatatatatatatatatatataaaagaagtcATTAAACTGCTCTGATTTTTCAATTCAA

Function

symbol description
cacna1g Predicted to enable low voltage-gated calcium channel activity and voltage-gated sodium channel activity. Predicted to be involved in several processes, including calcium ion import; neuronal action potential; and positive regulation of calcium ion-dependent exocytosis. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in neuron projection. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in cerebellar ataxia type 42. Orthologous to human CACNA1G (calcium voltage-gated channel subunit alpha1 G).

NR:

description
voltage-dependent T-type calcium channel subunit alpha-1G isoform X4

GO: NA

KEGG:

id description
K04854 CACNA1G, CAV3.1; voltage-dependent calcium channel T type alpha-1G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668920.1 True 9082 mRNA 0.54 40 2730484 3069831

Neighbor

gene id symbol gene type direction distance location
spata20 spata20 coding upstream 32448 2639255 ~ 2698036 (+)
etv4 etv4,LOC107706904 coding upstream 111113 2574538 ~ 2619371 (+)
meox1 meox1,LOC107577625 coding upstream 214029 2505355 ~ 2516455 (+)
sost LOC108414158 coding upstream 340455 2384374 ~ 2390029 (+)
dusp3 dusp3,dusp3a,LOC107669488,LOC107552769,LOC107582744,LOC107666929 coding upstream 362685 2352013 ~ 2367799 (+)
uts2r uts2r,LOC108426413,LOC108273405,LOC107754100,LOC107689263,LOC107552777 coding downstream 56551 3126382 ~ 3182179 (+)
LOC103043460 LOC108426414,LOC108274136,LOC107754112,LOC107743783,LOC107566616,LOC107691214 coding downstream 253133 3322964 ~ 3342690 (+)
cdk5r1 cdk5r1,LOC108426451,LOC103047129 coding downstream 322477 3392308 ~ 3399142 (+)
tbx21 tbx21 coding downstream 658585 3728416 ~ 3746114 (+)
pnpo pnpo coding downstream 707911 3777742 ~ 3781778 (+)
G33950 dhx8,LOC107706906 non-coding upstream 95462 2628670 ~ 2635022 (+)
LOC111192349 NA non-coding upstream 252997 2395313 ~ 2477487 (+)
G33882 NA non-coding upstream 300282 2429944 ~ 2430202 (+)
G33875 NA non-coding upstream 396399 2333743 ~ 2334085 (+)
G33849 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding upstream 449235 2276768 ~ 2281249 (+)
G33987 NA non-coding downstream 147173 3217004 ~ 3218342 (+)
G34073 NA non-coding downstream 249883 3319714 ~ 3319922 (+)
G34078 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC103367354,LOC107691212,LOC101174707 non-coding downstream 313157 3382988 ~ 3390577 (+)
G34105 NA non-coding downstream 475622 3545453 ~ 3557491 (+)
G34177 NA non-coding downstream 733148 3802979 ~ 3804577 (+)
amz2 amz2 other upstream 673521 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 1342465 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 1737966 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 1745103 983167 ~ 985381 (+)
LOC111192417 NA other upstream 2306013 419010 ~ 424471 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 494199 3564030 ~ 3659132 (+)
G34309 NA other downstream 1101220 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 1812725 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 2622691 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 3176815 6246646 ~ 6258050 (+)

Expression


Co-expression Network