LOC103037237 (adgra1a,LOC108426471,LOC107754080,LOC107675035,LOC107565950,LOC107693584,LOC107563791)


Basic Information

Item Value
gene id LOC103037237
gene name adgra1a,LOC108426471,LOC107754080,LOC107675035,LOC107565950,LOC107693584,LOC107563791
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4039157 ~ 4070732 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668929.1
CACAACTGCTCGCCACTATGACTAACCCAGCTCTAGCTGCGATAGTGAAGACGAAGAGAGGATGCTATAGCCAACTCGACTGACTGGCTGTCTTACCATTTGTTGCAGTACCGTTTTTctaaaggcattttttttttacgtttttttaacCCTATATTAGCTgtgtttttctctatttttctgtcattttctattttttccttttctcccttgctttttttattcaatttgttCCCCCAAAAATCAAACACTCACGTCACGCCCAGCGAGAGCTTTCTTCACCTGAACggactctctctctcgttctctctctctctctctgaacaacCCGCCGGtctcgcgcgcgcgcgcgcAGATGgacgcggcggcgggtgcagcgcGCGCTGCCTCCTCTCGCCGCCGCTCGCGCCCCGGACCGTACTCTCACCACGTGCCGCGCGGCCTCCTGCTGACGGACTGCGAGAGCGCGCACCCACCGCTGAACTGAGAGGCTGGAGCGAGACTTCGCAgaactgatgGTGCCAGATACAGACAGTACTACAGCCTGCAGCAGGGAGGCACAGTTGCAGAAGATACCAAAGCAGTTTAGACGTCTGCATCGTTCTTCCAGACATGGGCATGCTAAATGATTTAAAGAGGGTGCTTTCCTTCCCTCCGTATCCAGGGGATTACCTGCACCCGGTTGTGTACGCGTGCACGGCGGTTATGCTGCTCTGCCTGCTGATATCAATTATGACATACATTATACACCACAgTGTGATCCGAATCAGCAGGAAAGGATGGCACATACTCCTGAATTTCCTCTTCCACACGGCCGTGACGTTTGGGGTGTTCGCAGGAGGCATCAACCAGATCAAGTACCCTGTCGTCTGCCAAGTGGTTGGCATCATCTTGCACTACTCCTCTCTGTCCACCATGCTTTGGCTGGTGTTCACTGCCAGGAATCTATGTAGAGAGGTCTCCAAGGCTCCGCCTCCACCTCAGGGCAGAGATCCGCCTGCACATCACCGCCCCAAAGCCACCATATTCAGATTTTATCTGGTCAGTGGTGGGGTTCCCCTCATTATTGTTGGGGTCACTGCTGCAGTTAGCCTGGACAACTACGGGAGCAGAGATGATGCCCCTTATTGCTGGATGGCTTGGGAGCCCAGTCTGGGAGGCTTCTATGGTCCCATTGCTTTCCTGGTCCTCGTGATGTGTATCTATTTCCTGTGCACGTTTGTTCAGCTGAAGCGTCACCCGGAGCGCAAGTACGAGCTGAAAGCAATGACAGAGGAGCAGCAGAGACTGGCCACTGCGGAGATAGGACACTGCCATGCTGGAGGAGAGCATGGAGAACATGGGGATCACTTGGGCTGCACAGCCATCACAGCTTCCATGTTGGCCAACGAGCATTCCTTTAAGGCCCAGTTACGGGCCACCGCCTTcaccctcttcctcttcctggCCACATGGGCTTTCGGGGCACTGGCTGTGTCACAGGGCCATTTCCTGGACATGATCTTCAGCTGCTTGTATGGTGCATTTTCAGTCACACTGGGGCTGTTCTTGCTGATTCAGCACTGTGCCAAACGGGACGATGTATGGCACCGCTGGTGGGCCTGCTGCCCGTCTAAACCTAAAGTGGAGGTGAACGGAGAGGCTGCGGCCAGTAACGCTGTCACTCAAATCCAAAGCCACACCACTCCCTCCCACAGCCAGACTCAAATCCACTGTCCGGCGGAGCCGCCTTGCCCGGCTAAACCTTTACTGTCCCCCCACCTCCACACTTCTCCTCACTGTAAACTCAGTCCCTTACCCTCCGTTCAGAACCATGCTAGCAcctgctgtgctgctctgcaCTCATCATCCCCCATGCTGGGGGGCTCCTCTCGGCCTCAGTCGCTTCCAGACGAACTGCCTCGGCCCACTCTGCCCTTGCAGAGCTGCTTGAAGGACAGGACTAAATCACGCTCCTTCAACCGGCCACGCCCCTGCCTCAGGGACTACGCCTACCACATGGCTTCCACCAGCATGGACGGCAGCGTGCACAGCTCGCACCTAGACAGCCCCCACAGTGTCCATCTGGACAACCCCCTCACCTGCCATGCATCACACATGGACAGCCAGCTGTCCTGCCACAGCCCACACCCAGACAACCAGTTGCGTTGCCCAAGCCCCAGCCCACACCTGGAGGGCCTGGCCTCACACAGTCTGCATGACAGCATCTCCTGCCACAGCGTGCACCTGGAACTGGAAGGCCACGATGGACACACCTGCCACAGGCATGCTTGCTGCGCCAAGGCCGACCCATTCTCCAGCTTCTGCTGCACAAAAGCAGACCCCTTTGCCAGCACTTGCCAGACGGAGGACCCTGACTCGAGTTCCTTGATGTTCAGTAGCGCCAAAACGGCCGATAAAGAGGACGATGTCATGCTGCACTTGGATATCCCCCCTCCGCGGGGTGCCCTGCCCTGCTCTCAGGCCACTCTCAGCAGAAAGGGCACCCTCAGTCGCAGGGGGACAATAAGCCGCAACGGCAGCCTACATGAGGATTACGCCTATAGCTCTGACTCCACAGGTAACATTAGGACTGGGCCATGGAAAAACGAAACCACTGTGTAGCCCAGTAACTGATGGGAAGTGACCTGTTCCATCCTCCTCAAGCTAAACTACTGTGTAGTCCCAGGGCTGTTACCCTCCTAAAGAAGGCCCCTTGACCTCTGAACTAAACTACTGTGTAGTCCTTCCGCTGTGGCTCTCATCTGCACTCTCCCGAAAAACCTCAAAACCTTCACTTTTACcactaaatataaatttatatggCTTTGAAAGATTTCACTTCCCACACTCAACTCACCTGTGTACATCCTTTGGTTTAGCACGATTCTCTGCCATTAAAAATGGTTCTGAGGTAGGAAGCGCactgataaaatgttttttttttaagtcaattgATTTTTGTACATGTTAAGTGTTCTTGGGTACCTTTACATAATGTGCAATTACTtcagtgtgagtgaatgtgtgtgcgagtgcatgtgtttgtgtgcaccCCCTAGATGCACTTTTAAAAGTCAAGAGGCTTCAAAGGGCTCTTCATGTGATGTCATAGAACAACTGCTGTGTAAAAGAGATGTGTGAGTATGAATAACCTTAATAATAGTGGAGAACCTTTAAATGAAGTACCTTTAAAAGGTTCTGCACACTCAAACATCCTCTCTTCACAAAAACGGGCTATTTTATAATAGTAGCATAACACACGTTACACAGTCCATTCAGAATAACCACTACCTTGTTTTTACACTTTGTGGCAATTTTATCAGCTGCACTGAGAAAATAGAATTAAtttgtagtcctgtatctgtttctctgtatatgtTATTATTCTCCTTTTACCTTGTTTTCAAGACCCACAGGAAAGagcagagcaggtattattttggtggtggatcattcgcagcactgcagtgacattaAGTGACATGATAGTA
>XM_022668930.1
CACAACTGCTCGCCACTATGACTAACCCAGCTCTAGCTGCGATAGTGAAGACGAAGAGAGGATGCTATAGCCAACTCGACTGACTGGCTGTCTTACCATTTGTTGCAGTACCGTTTTTctaaaggcattttttttttacgtttttttaacCCTATATTAGCTgtgtttttctctatttttctgtcattttctattttttccttttctcccttgctttttttattcaatttgttCCCCCAAAAATCAAACACTCACGTCACGCCCAGCGAGAGCTTTCTTCACCTGAACggactctctctctcgttctctctctctctctctgaacaacCCGCCGGtctcgcgcgcgcgcgcgcAGATGgacgcggcggcgggtgcagcgcGCGCTGCCTCCTCTCGCCGCCGCTCGCGCCCCGGACCGTACTCTCACCACGTGCCGCGCGGCCTCCTGCTGACGGACTGCGAGAGCGCGCACCCACCGCTGAACTGAGAGGCTGGAGCGAGACTTCGCAgaactgatgGATTTAAAGAGGGTGCTTTCCTTCCCTCCGTATCCAGGGGATTACCTGCACCCGGTTGTGTACGCGTGCACGGCGGTTATGCTGCTCTGCCTGCTGATATCAATTATGACATACATTATACACCACAgTGTGATCCGAATCAGCAGGAAAGGATGGCACATACTCCTGAATTTCCTCTTCCACACGGCCGTGACGTTTGGGGTGTTCGCAGGAGGCATCAACCAGATCAAGTACCCTGTCGTCTGCCAAGTGGTTGGCATCATCTTGCACTACTCCTCTCTGTCCACCATGCTTTGGCTGGTGTTCACTGCCAGGAATCTATGTAGAGAGGTCTCCAAGGCTCCGCCTCCACCTCAGGGCAGAGATCCGCCTGCACATCACCGCCCCAAAGCCACCATATTCAGATTTTATCTGGTCAGTGGTGGGGTTCCCCTCATTATTGTTGGGGTCACTGCTGCAGTTAGCCTGGACAACTACGGGAGCAGAGATGATGCCCCTTATTGCTGGATGGCTTGGGAGCCCAGTCTGGGAGGCTTCTATGGTCCCATTGCTTTCCTGGTCCTCGTGATGTGTATCTATTTCCTGTGCACGTTTGTTCAGCTGAAGCGTCACCCGGAGCGCAAGTACGAGCTGAAAGCAATGACAGAGGAGCAGCAGAGACTGGCCACTGCGGAGATAGGACACTGCCATGCTGGAGGAGAGCATGGAGAACATGGGGATCACTTGGGCTGCACAGCCATCACAGCTTCCATGTTGGCCAACGAGCATTCCTTTAAGGCCCAGTTACGGGCCACCGCCTTcaccctcttcctcttcctggCCACATGGGCTTTCGGGGCACTGGCTGTGTCACAGGGCCATTTCCTGGACATGATCTTCAGCTGCTTGTATGGTGCATTTTCAGTCACACTGGGGCTGTTCTTGCTGATTCAGCACTGTGCCAAACGGGACGATGTATGGCACCGCTGGTGGGCCTGCTGCCCGTCTAAACCTAAAGTGGAGGTGAACGGAGAGGCTGCGGCCAGTAACGCTGTCACTCAAATCCAAAGCCACACCACTCCCTCCCACAGCCAGACTCAAATCCACTGTCCGGCGGAGCCGCCTTGCCCGGCTAAACCTTTACTGTCCCCCCACCTCCACACTTCTCCTCACTGTAAACTCAGTCCCTTACCCTCCGTTCAGAACCATGCTAGCAcctgctgtgctgctctgcaCTCATCATCCCCCATGCTGGGGGGCTCCTCTCGGCCTCAGTCGCTTCCAGACGAACTGCCTCGGCCCACTCTGCCCTTGCAGAGCTGCTTGAAGGACAGGACTAAATCACGCTCCTTCAACCGGCCACGCCCCTGCCTCAGGGACTACGCCTACCACATGGCTTCCACCAGCATGGACGGCAGCGTGCACAGCTCGCACCTAGACAGCCCCCACAGTGTCCATCTGGACAACCCCCTCACCTGCCATGCATCACACATGGACAGCCAGCTGTCCTGCCACAGCCCACACCCAGACAACCAGTTGCGTTGCCCAAGCCCCAGCCCACACCTGGAGGGCCTGGCCTCACACAGTCTGCATGACAGCATCTCCTGCCACAGCGTGCACCTGGAACTGGAAGGCCACGATGGACACACCTGCCACAGGCATGCTTGCTGCGCCAAGGCCGACCCATTCTCCAGCTTCTGCTGCACAAAAGCAGACCCCTTTGCCAGCACTTGCCAGACGGAGGACCCTGACTCGAGTTCCTTGATGTTCAGTAGCGCCAAAACGGCCGATAAAGAGGACGATGTCATGCTGCACTTGGATATCCCCCCTCCGCGGGGTGCCCTGCCCTGCTCTCAGGCCACTCTCAGCAGAAAGGGCACCCTCAGTCGCAGGGGGACAATAAGCCGCAACGGCAGCCTACATGAGGATTACGCCTATAGCTCTGACTCCACAGGTAACATTAGGACTGGGCCATGGAAAAACGAAACCACTGTGTAGCCCAGTAACTGATGGGAAGTGACCTGTTCCATCCTCCTCAAGCTAAACTACTGTGTAGTCCCAGGGCTGTTACCCTCCTAAAGAAGGCCCCTTGACCTCTGAACTAAACTACTGTGTAGTCCTTCCGCTGTGGCTCTCATCTGCACTCTCCCGAAAAACCTCAAAACCTTCACTTTTACcactaaatataaatttatatggCTTTGAAAGATTTCACTTCCCACACTCAACTCACCTGTGTACATCCTTTGGTTTAGCACGATTCTCTGCCATTAAAAATGGTTCTGAGGTAGGAAGCGCactgataaaatgttttttttttaagtcaattgATTTTTGTACATGTTAAGTGTTCTTGGGTACCTTTACATAATGTGCAATTACTtcagtgtgagtgaatgtgtgtgcgagtgcatgtgtttgtgtgcaccCCCTAGATGCACTTTTAAAAGTCAAGAGGCTTCAAAGGGCTCTTCATGTGATGTCATAGAACAACTGCTGTGTAAAAGAGATGTGTGAGTATGAATAACCTTAATAATAGTGGAGAACCTTTAAATGAAGTACCTTTAAAAGGTTCTGCACACTCAAACATCCTCTCTTCACAAAAACGGGCTATTTTATAATAGTAGCATAACACACGTTACACAGTCCATTCAGAATAACCACTACCTTGTTTTTACACTTTGTGGCAATTTTATCAGCTGCACTGAGAAAATAGAATTAAtttgtagtcctgtatctgtttctctgtatatgtTATTATTCTCCTTTTACCTTGTTTTCAAGACCCACAGGAAAGagcagagcaggtattattttggtggtggatcattcgcagcactgcagtgacattaAGTGACATGATAGTA

Function

symbol description
adgra1a Predicted to enable G protein-coupled receptor activity. Predicted to be involved in cell surface receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in glutamatergic synapse; plasma membrane; and postsynaptic density. Is expressed in brain; eye; liver; ovary; and testis. Orthologous to human ADGRA1 (adhesion G protein-coupled receptor A1).

NR:

description
PREDICTED: adhesion G protein-coupled receptor A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668929.1 True 3473 mRNA 0.52 7 4039157 4070732
XM_022668930.1 False 3364 mRNA 0.52 6 4039157 4070732

Neighbor

gene id symbol gene type direction distance location
LOC103037557 gabrz,LOC108426470,LOC108273489,LOC107675029,LOC107754081,LOC107565977,LOC107677887,LOC107563789,LOC107743757 coding upstream 35892 3958779 ~ 4003265 (+)
LOC103038101 valopb,LOC103038101,LOC108426422,LOC107566010,LOC107754082,LOC107743790,LOC107677889,LOC107675006,LOC107563788 coding upstream 114926 3910571 ~ 3924231 (+)
LOC103038417 NA coding upstream 141581 3894781 ~ 3897576 (+)
LOC103039243 LOC103039243 coding upstream 159977 3877901 ~ 3879180 (+)
LOC103039553 znf668,LOC103039553,LOC108426467,LOC107754087,LOC107675019,LOC107743759 coding upstream 163164 3871497 ~ 3875993 (+)
LOC103043774 NA coding downstream 32640 4103372 ~ 4105753 (+)
bms1 bms1,LOC107689949,LOC107675025,LOC107566656 coding downstream 37725 4108457 ~ 4132971 (+)
LOC103022011 gfra1,gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107707958 coding downstream 456213 4526945 ~ 4570849 (+)
LOC103024286 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802 coding downstream 728371 4799103 ~ 4819304 (+)
LOC103024595 arl3,LOC102778022,LOC103367836,LOC107684078,LOC103145158,LOC102201386 coding downstream 758306 4829038 ~ 4832548 (+)
LOC111192351 NA non-coding upstream 30744 4003483 ~ 4008413 (+)
G34188 LOC108426464 non-coding upstream 170662 3864368 ~ 3868495 (+)
LOC103040174 NA non-coding upstream 177708 3853445 ~ 3861449 (+)
G34177 NA non-coding upstream 234580 3802979 ~ 3804577 (+)
G34105 NA non-coding upstream 481666 3545453 ~ 3557491 (+)
G34288 NA non-coding downstream 67023 4137755 ~ 4138153 (+)
G34345 NA non-coding downstream 512986 4583718 ~ 4583977 (+)
LOC111192352 NA non-coding downstream 634181 4704913 ~ 4708973 (+)
G34393 NA non-coding downstream 703154 4773886 ~ 4774852 (+)
G34394 NA non-coding downstream 704289 4775021 ~ 4775341 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 380025 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 1982194 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 2651138 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 3046639 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 3053776 983167 ~ 985381 (+)
G34309 NA other downstream 100319 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 811824 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 1621790 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 2175914 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 2431413 6502145 ~ 6541460 (+)

Expression


Co-expression Network