bms1 (bms1,LOC107689949,LOC107675025,LOC107566656)


Basic Information

Item Value
gene id bms1
gene name bms1,LOC107689949,LOC107675025,LOC107566656
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4108457 ~ 4132971 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668931.1
TTAGCGCAGCGTGTACCAGGCGGAAGAGGAGCACACGTGTAAACAGTGCTGGATTTGGTGCTGCTgtagctgaggctggagctaaGACTGTAAATGTGgctgtggtgtatagtgtgtgtggctttgtaaactgaaacacaaacacacgggGAACAAAGGACTAAACACTGAGAGCTGAATACCGGCTGGTTTATACAGTCTCAGGCTGTGTGAgACCTTCAGGGTGTGAGGATGGAGGGGAAGGAGCAGAAGCGGCACCAGCACAAGCATAGCGGCCCCAAAGCtgagaagaagaggaaaaagcaGCAGAAAGAGCATGGAGTTGAGCAGGAGCAGGATGAGCGCAAGAAGAACCCAAAGGCCTTCACAGTGCGCTCGGCAGTGCGCATGGCCCGGAACTTTCACAGAACTCAagatataaaaacaaagaaacatcaTATTCCTCTGGTGGACCGCACTCCTCTTGAGCCTCCGCCTGTTGTGGTGGTGGTAATGGGGCCTCCAAAAGTAGGCAAGAGCACTCTTATCCGCTGCCTGATCAAAAATTACACACGCCAGAAGCTTGCAGACATCTGTGGACCTGTCACTATAGTGTCTGgAAAGAAACGACGTCTGACCTTTATTGAATGTAACAATGACATCAATACAATGATAGATCTGGCAAAGGTTGCTGATCTGGTTCTGATGCTGATAGATGCTAGCTTTGGCTTTGAAATGGAGACGTTCGAGTTCCTCAACATCTGTCAGGTCCATGGATTCCCTCGCATCATGGGTGTGCTTACACATTTGGACACCTTCAAAAACACCAAGTCCCTCAATAAAACTAAGAAACGTCTCAAACATCGCTTCTGGACTGAAGTCTACCAGGGGGCCAAGCTGTTCTACCTGTCGGGAATGGTGTATGGGGAGTACCAGATGCGAGAAGTGAAGAACCTTGGACGATTTATTTCAGTCATGAAGTTTAGACCCCTTCTCTGGCAAAGCTCCCACCCTTATGTGGTGGCTGACCGAATGGAAGACCTGACTGATCCTGAGGCTATTCGGTTAGATCCTAAATGTGACCGAACTGTGTCTCTCTATGGCTACCTGCGTGGGACATTCCTTAAGAACAAGGGCCAGGTTCACATTCCAGGTGTAGGGGACTTTTCTGTAGAGGACATCAGCTTTATTCCTGACCCCTGTCCACTTCCTGAAACACTAAAGAAGAGAGCTCTAAATGAGAAGGAGAGACTGCTGTACGCTCCCATGGCTGGGGTTGGAGGACTGGTGTATGATAAGGATGCAGTGTACATTGACATGCCTGGAAGCCACGTAAAGCAGCAGGAGGAGGAGGTGCGACCCACTGCTGAACTGGTGCAGTCACTTATGggcacacacaccacattagATGCAAAGATGGCTGCTAGCAAAGTCTCGCTGTTCACAGGATCGGCCGCTCTGACCCCAGATGACGTTCAGGACAACAGTGTAAAGCAGGGCCCTGTGGAGAGTCGAGTGTGGGATCcagagactcagagagagaggaggaaagcTGTCTTcactgaggaagaggaggacgaCAATAGTGAAGAAAGTGATGAAGAGGAATCTGATcaagaggatgaagaagagatggagagtgcaggagaagatgatgatgatgatgatgaggaggaggaagaagatgGAGATGAAGGAAGTAAACAGCAGGTAGGTGAGGAGGAGAAGAAATCAAAAATGGCTGCAGCTCCACCTACAAAAAGACAGAAGCTGGAGGAGAATGGAAAGGAGGTCAAGGGAGGGATGGAGATGCCTGCTTTTGCAGACAgtgaggatgagttggagaagagtgaggatgaggaggaagaTAAGGAAGAAGATTcagaggatgaggatgaggaggagatgaaggaagaggaggagaagaaggaaaagaagaaatCCTCTGCACCTCCAGACTCTGGACACTGctcggaggaggaggacgatgatgatgatgaggaggacgacgacgatgatgatgatgatgatgatgataatgatgatgaggaAGAAGATGAATCAGAGAAGAAACAGcaagtaaatattaaaacaccTGCTTTAAAgccaaagaaaaaagaaaaagaggaaaaggaggagaaaatgGATGCTGAGGATGAGCTTGAGGAAGAGGAAGCAGAGCTGGGAGCTGATACTGTAGGAGCACTACAGTGGAAGTCAAATTTGGCCCAAAAGGCAACAGAAGCCTTTCTGAAGCGTCAGCGAAGTGCCCCTAACCTCCGCAAGCTGGTGTATGGCACAGtggtggaggaggaagaggatgcACAGAACAAGGAGGATGAGGAGCTGGGTGGTCTGTTCCGAGTTACCCGACCTGAGAAGAATAAGAAAGTCAGAGCAGATGCTGTAGACTGCTCACGCTTCCATCCAGACGCCGGGCACGACTGGGAAGACGAGGAGATGCTGACCTCTATAAGGGACTGCTTTGTCACCGGGAAATGGGAGGGAGACAAAGATGCTGCTACTCTACTTAAAGAGGATGATGAGGTTTATGGAGACTTTGAAGACTTGGAAACTGGAGAGGTCCACAAAGCGATGGGAGATGAAGCTGAGgaggatgatgatgatgaagatgaagaaaaggaggaagaagaggccGTCGTAGTGAAATTTGATGATGACGAAGCTAAAAAGAACAAGCGTCTGGAGAGGAAGAAGAGACTGAAGGAGAGATTTGATGCAGAAtatgatgatgctgatgctaCATACTTTGATGATCTCAAGGAGGAGATGCAGAAACAGGCTGAGCTGAACAGGGCTGAGTTTGAGGACATGGATGATGAGGCTCGGATTCAGTACGAGGGGTTCAGGCCTGGCATGTATGTGCGTCTAGAGATTCCTGGCCTGCCGTGTGAATTTGTCACAAACTTTGACCCTCACTATCCCATCATTCTCGGTGCTTTGGGAGCCAGTGAAGGCAATATTGGCTATCTGCAGATGCGATTGAAGAAACATCGCTGGTTTAACCGTATTCTAAAAACCCGGGATCCGCTCATCCTGTCTTTGGGCTGGAGACGTTTCCAGACCATTCCGCTCTACCATATTGAGGACCATAATGGCCGCCACCGCCTACTTAAATACACTCCTGAACACATGCACTGTGGTGCTTCTATCTGGGGGCCTATCACACCTCAGGGGACAGGCTTCCTGGCGGTTCAGACTGTTGCAGGGACTCAGGCAAATTTTCGCATCGCAGCCACCGGAGTCGTCCTGGACTTGGACAAATCCGTGACCGTCGTAAAGAAACTGAAGCTAATCGGATACCCTTATAAGATTTATAAGAACACCTGCTTTGTCCAGGGAATGTTTAACACAGTGCTAGAGGTTGCCAAATTTGAGGGTGCCTCCCTCCGGACGGTCAGCGGGATCAAAGGCCAGATAAAAAAAGCTCTGCGCACTCCGCCGGGGGCTTACCGTGCCACGTTCGAGGACAGGGTCCTCATGAGTGATATTGTATTCCTGCGTTCCTGGTACCCTGTGACTGTTCCTCAGCTGTATAATCCAGTGACGTCTCTGCTGTTGCCGGTTGGTCAGAAGGACACATGGACTGGAATGAGGACAGTGGGACAACTCAAACACGACTTGGGAATAAGAAACCATCCCAACGTCGACTCTCTCTACAAACCTGTGGAGAGGCAAAAGAGACACTTCAATCCCCTGCACATCCCCAAAGAACTGCAGAAAGCCCTGCCCTTCAAGAACAAACCGAAATTCCATGAGGCCAAGGGCAAAACCCCTCGAGACCTCCAGAGACCTGCTATAATCCGGGAACCCCACGAGAAAAAGGTGGCAGAGTTGCTCACTGCTCTGAGCACAGTTTATAACTACAAGAACAAGAAGGCCCATGTGGAGCAGCGTGAAAAGCACAAGGATTTCCTGAAGCAGAAGGagaagcaggaggaggagaagcaAAGGAGGCtgaaggaagagagaaagaaggtgtACCGTGCCATGGGacaaaaggagaagaagaagctaAAGTCTAGCCTGAAGGGAGCTTCTAAAAATGAATGAGCATGTGTGGAACAGACACTCTACCCGGTGCTGATAGACTAAAGCTACAGACCCACCGGGTCCTGCTATGCTCCATGTTGAGCTGTTTGATGAGAGTCAGCGACTCAGACCTCATGCTGGCTGTTCTCCCTGCTGAGGCTCCAGTGTGTGGATTTGTAAAGTCATATGAGATGTGAAGCTGGCACTTTGTATGTCTTTAAAACTGCTACCTCCTCATGAGCAAACCCCGCCTCCCCCTGTGTCTCTATCaattaaggccaatttatacttctgcatcgaATCAACACGCTGTCTATGGTGTAGCCTCGGGAAGCGCACATAGCCCTACAGTTTAAAATACGAAGGCAGGAACGTGTGGGCAGCCCAGCGAACCAATCACAGCTACTGTTACAATTATGGGGAGATTCACATCAAGCTATGGTGTAGGCTATGATGTAAGGTCCGTGGCTACTCATCGGGTATGCGTAGGCTATGGCGTAGGTTTGACGCAGaggtataaattggcctttaggCATGCTATTCGTAAGACTGAGGAGATTCTGGATGAGATCTAGTTTGTGGAGGGGTGTACAGACTTCTTGGTGTTCGTATTCCTACCTACTGTACCAGCAGGAAGCCACGTGAACAGAGCATAATGTTGGTTTtaataaaatctgtattttgttttctgacaaAACCAAAA

Function

symbol description
bms1 Predicted to enable GTP binding activity; GTPase activity; and U3 snoRNA binding activity. Acts upstream of or within liver development; pancreas development; and rRNA processing. Located in nucleolus. Is expressed in gut; liver; pancreas; and retina. Human ortholog(s) of this gene implicated in nonsyndromic aplasia cutis congenita. Orthologous to human BMS1 (BMS1 ribosome biogenesis factor).

NR:

description
PREDICTED: ribosome biogenesis protein BMS1 homolog

GO: NA

KEGG:

id description
K14569 BMS1; ribosome biogenesis protein BMS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668931.1 True 4735 mRNA 0.49 24 4108457 4132971

Neighbor

gene id symbol gene type direction distance location
LOC103043774 NA coding upstream 2704 4103372 ~ 4105753 (+)
LOC103037237 adgra1a,LOC108426471,LOC107754080,LOC107675035,LOC107565950,LOC107693584,LOC107563791 coding upstream 37725 4039157 ~ 4070732 (+)
LOC103037557 gabrz,LOC108426470,LOC108273489,LOC107675029,LOC107754081,LOC107565977,LOC107677887,LOC107563789,LOC107743757 coding upstream 105192 3958779 ~ 4003265 (+)
LOC103038101 valopb,LOC103038101,LOC108426422,LOC107566010,LOC107754082,LOC107743790,LOC107677889,LOC107675006,LOC107563788 coding upstream 184226 3910571 ~ 3924231 (+)
LOC103038417 NA coding upstream 210881 3894781 ~ 3897576 (+)
LOC103022011 gfra1,gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107707958 coding downstream 393974 4526945 ~ 4570849 (+)
LOC103024286 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802 coding downstream 666132 4799103 ~ 4819304 (+)
LOC103024595 arl3,LOC102778022,LOC103367836,LOC107684078,LOC103145158,LOC102201386 coding downstream 696067 4829038 ~ 4832548 (+)
twnk cunh10orf2,peo1,LOC107755431,LOC107690904,LOC107565785 coding downstream 798444 4931415 ~ 4937026 (+)
galk1 galk1 coding downstream 806028 4938999 ~ 4943449 (+)
LOC111192351 NA non-coding upstream 100044 4003483 ~ 4008413 (+)
G34188 LOC108426464 non-coding upstream 239962 3864368 ~ 3868495 (+)
LOC103040174 NA non-coding upstream 247008 3853445 ~ 3861449 (+)
G34177 NA non-coding upstream 303880 3802979 ~ 3804577 (+)
G34105 NA non-coding upstream 550966 3545453 ~ 3557491 (+)
G34288 NA non-coding downstream 4784 4137755 ~ 4138153 (+)
G34345 NA non-coding downstream 450747 4583718 ~ 4583977 (+)
LOC111192352 NA non-coding downstream 571942 4704913 ~ 4708973 (+)
G34393 NA non-coding downstream 640915 4773886 ~ 4774852 (+)
G34394 NA non-coding downstream 642050 4775021 ~ 4775341 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 449325 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 2051494 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 2720438 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 3115939 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 3123076 983167 ~ 985381 (+)
G34309 NA other downstream 38080 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 749585 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 1559551 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 2113675 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 2369174 6502145 ~ 6541460 (+)

Expression


Co-expression Network