LOC103044368 (LOC108426474)


Basic Information

Item Value
gene id LOC103044368
gene name LOC108426474
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4219467 ~ 4440792 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668932.1
CCGCATCAGTTTTCAGAGCAGggctccctcctcctcctcccatcgttcccctctctctccccctctctctcccttactcTATCACTGTATTACCGCCAGTGTGTGTCTCTCAGTGTGGGAATGTAGCATATAGACTTGATGGCTGCACTTCTTTTTCCTTTCCAGCACTAATGCACTGAAGGACCTTGCACTGACAGTTGGACACGCGTTGTGGTTAGAAGGGGGGCGTTTAAGGGCACAGATAGGAGGGGGAAAAACAGGATCAAACGGATTTAACCCTGCTGATTCCCGCGCATCTTTGTGCTGTCCGCTGCTCGGGCTGCTTTCTCTCGGGGTGGGAGATTACGGCtgactgtgtctgtgtgtgtgcgcatgtgtgtatGCTGGAGCGCCgctggaaagagagagagagaggaagcgaAAAGAGACCGCAGCTACGGCTGTGTCTAGGGAAAGCAAGGGGCAAGCTgcaagctgctgctgctacctGAGCTGCTTTTGCCCactgcacatacacacagacacgcacacacacacactcgcgcagaGGCAGGGGCTGCGCCAGCCACCACGGTTACTGCGTTAGTGCAGTTGCGAGAGGAGAGGAGCTGCAGCAGGGAGTGTTCTCTGCGCACACATGGATTTTACGGCACGATTCTTCTAACGGCTCCGACTGCCAGCCTTGTGTTTCAtggattgttatttttttccattcccGGCGTTTTCTTCTTCTTGGAGCATCTTGGGAATTATCTTCATCTCTCCGGACGCTGAACTAGATAGAGGCACGTCCCTTGATTTCCCCCACCCTCTCCTCCACTTCCCTTCCTTTCCTTTACTTACCTCTGCTGTCTGAGTGTGGGTTTGTGCAAGAGTGCGTGTTTGTGCACATGATTATTCTTATCTTGTGCTTGCTATTGCattgtattgtgattattgCATAGGGTCTGTATTAATCAGTTCACATATGGGCTAATGCTGAGTGTTATAATGGTTTTTCAGAGTTTGCATGTTTCTTCGTGGTTGTGAACGactgtgcgtatgtgtgtgtgtgtgagcaagtgtatgtgtgtgcgtgaatGTTAATGAGATGCCCAGCCCTGCTTCCCTCCCCGGCCCCCTCCCCTGCCCGCtctgccgccgctgctgctcCTTAGCCGGGCCCTGAACTCCGATAGCATGAGCGAGAGAACGGCACTAGGGGCCACCATGGAGACCATGACCCTGGAGGAGCCTGGGGGTGAACAAGCCTCTCCCCGGGTCCCGGGGCCCCTCCGCTGTGGCCCCTGTGCAGTGTGGCCCCGCCAGCAACAGACGTGGCTGTGTGTGGTGCCCTTGCTGATGGGCTTTGTGGGCCTGGGTCTCAGCCTGATGCTACTCAAGTGGATTGTGGTGGGCTCAGTCCAGGACTACGTCCCCACCGACCTGGTGGACGCCAAAGGCATTGGGCAGGACCCCATCTTCCTCTCAAAACCCAGCGCCTTGCCAAAGGGCCCAGATGTCCCCTCGGCATCCACAGCAGCTCCAGCCAATACAATGGGCCCTGGCTCTGCTGCAGATGGGACCGGTGCAGTGCAGAGGACTCAAGCTGGACCTCCTTCTAACCACTCAATCGtcgtcagcagcagcagcagcagcagcagtggaggGAGGGCAGCCGGGGCAGTTGGAGGAGGATCAGGGAACAGAGTCCCTCACCTCCATAACAGGGTAGGCACAAGAGCCAATGGCACTGCCTCCACTCGCCCTGCAGCACCTGGAGGCAAGGAAGTGACCCCACGCAGCACAACGGTCAGAAAGCCTGGCGGCGCAGCCGGAGGCCGAAATGCTCAGCCGTCCTCCAGAGCAGGCCCACCAAGCCCGACCTCAGTCAACACAACTACAGCTACTTCTGCCACTAGTACTACTGCAAAAAGCACAACTTCTACTCGAATGGCCCTACCCACCACCTCTACCCCTACCGCTCCAGCCAGGCCCACTCAGCGCTTGAACCATGGACGCTCTTCTAAGGGCCCATCCACCAAGCCCACACGTCCTCACCACCGCTTCAGAACCCTTGCACCTACAACCCCGACGGTCCGTTCCGAGTTCTTCAAGCCCTGCCAAGACAGCCAAGAGCTCGCCTTCTGTCTGAACGAGGGAGAGTGCTTCATTATCGAGACAGTGGCAGGAGTGCATAGACACTGCAGGTGTAAAGAGGGTTACCGCGGGCTTCGCTGTGACCAGTTTGTGCCGAAGACGGACTCCATCCTATCTGATCCAACAGCAGACGAGCTGGGTATCGAGTTTATGGAGAGTGGAGAGACGTACCAGAGGCAGATCCTGTCAATCTTCACCATCGCCATGGGAATCAGCTTGCTGGGAGTGGCCTGCATGGCTCTTTACTGCAGAAACAAGAGACAAAGGGAAAAACACAGAGTCCACCTGACAGAGATGCGCAATCTGAGGGACTGCAGTGTCAATGCCTTGCGGCTCATGTCCAAATCCAGCTCCGGTGCTGAATGTGGCCTCCAGCCTCAAAAGtgctgTAAAGCCCACGGGTCCTCCCCTGCACCCGGCAGAGGTACAGTGCACAGCAGCTCCaaacccagcagcagcagcctgtctaCAGGGAAACGCCGCAGCTGTTCCTTCTCCACTAGTCCTGCTATAAAACAGAAGATACCCAGTCACAGATCTGCTGCACGATGGACTCCGCCCATCTCCAGAGCAGGACATCATCTGATTGGAGGATCAAAGGATTCTATTCACAGCTACAAACACCTCCAAGAGGTGGAGGCCACAGACATGACATCAGAATCCTTGAGAAGGTGCCAGTCCCACACTGATGGCAATCAGCAGCACAGCCACTTGTATTTGAATATGCAAACTGTGTCCTCTGTGCCTACCAGAGGAAGACTGGCCTGCACTGACGTTCCCTGCACTCGACTGGATCAGGGAACGGCTTTTCCTCGCCCTTCTCACCGCACCTGCTCTGTTCCCATCATCCCCTCTGTCCAGGCGTCTAATGTGGGGGACAGGTCCGGCGACGAAGGCGGTGCCACGCTGCTTTACAGAAGTGGAGTTTCGGCCAGCTACACACTAATCAATCCCGAGACTGAGGCGGAGTCACTGGCCAATTCCAGCCAATCACTGGCCACCCCCTCCACCGGGTCGCACGGACTGACATGCTCAGAGTCCGTGCTGGCGGTGGGCCCAACTAAACACAAAAGCCTTGTCACTTACACAACAGCCTTGGGAGCAGGTACAGACTCCAGTAGAGCAAAGACTGTCATCTCCATGACCGTATTAGCGTCGTCCAGCCTGTCCAAATCCACTGGAAAACTGGAACGCCGGCCCACGCGGTCAGCTCGCAGAGGGAGTCTAAGGGAAGATTCCGCTGTTGGTTTACAAACATCATTTTCCAAGGGAGAGAAAGACTTCTATCTGTCCAGTGAGCTTAGAGGTGTGCCCTGTCTCACACCTCCTAAAAGCTGATTGGATAAATCAATAGATCTTATGAATTGCATACACAAATGTTTATTGGGGGAGAGACAGGGTGGGACACGGCCTCCCCAAATCTCCACACCCTGGTGTTGACCAATCACAGGACTCTCTGAACTACATACACGGATTACAGAGAGAACCCTGCTAAAGTGACAGAATTTCAAACCACTGGATAACTAAGAACACAATGTGAATAAATTATGAAGAGGTTAAAGACTATCGTTGGGATGTTGATTTAAAGAGGTATGAAAGAAGATAAAAGATTTATATGCcactatttaacaaaaaaaagcttctacTTAGAAACCAAATAGTGTCATCTCTATGTTGTTTctctattgtaaaaaaataaaaaaataaaatataatagatGTCATAACTACGTGTATGTCATATATATgtcattatataaatatatatatgacatacaaagagatttaaaaaaataaagacgcAGAATATGGTAAAGAAGAagcttttcattttaaacagctcTGCCATCCTATGATAACCCAGTCCAACTCTGTCTTTTGTCTGTTATGCTTGAGGACGTGAGGAGAGTTTGGTGGTTCATGAATAAAATCTGTATGTCACCTTGT
>XM_022668933.1
CGCATCAGTTTTCAGAGCAGggctccctcctcctcctcccatcgttcccctctctctccccctctctctcccttactcTATCACTGTATTACCGCCAGTGTGTGTCTCTCAGTGTGGGAATGTAGCATATAGACTTGATGGCTGCACTTCTTTTTCCTTTCCAGCACTAATGCACTGAAGGACCTTGCACTGACAGTTGGACACGCGTTGTGGTTAGAAGGGGGGCGTTTAAGGGCACAGATAGGAGGGGGAAAAACAGGATCAAACGGATTTAACCCTGCTGATTCCCGCGCATCTTTGTGCTGTCCGCTGCTCGGGCTGCTTTCTCTCGGGGTGGGAGATTACGGCtgactgtgtctgtgtgtgtgcgcatgtgtgtatGCTGGAGCGCCgctggaaagagagagagagaggaagcgaAAAGAGACCGCAGCTACGGCTGTGTCTAGGGAAAGCAAGGGGCAAGCTgcaagctgctgctgctacctGAGCTGCTTTTGCCCactgcacatacacacagacacgcacacacacacactcgcgcagaGGCAGGGGCTGCGCCAGCCACCACGGTTACTGCGTTAGTGCAGTTGCGAGAGGAGAGGAGCTGCAGCAGGGAGTGTTCTCTGCGCACACATGGATTTTACGGCACGATTCTTCTAACGGCTCCGACTGCCAGCCTTGTGTTTCAtggattgttatttttttccattcccGGCGTTTTCTTCTTCTTGGAGCATCTTGGGAATTATCTTCATCTCTCCGGACGCTGAACTAGATAGAGGCACGTCCCTTGATTTCCCCCACCCTCTCCTCCACTTCCCTTCCTTTCCTTTACTTACCTCTGCTGTCTGAGTGTGGGTTTGTGCAAGAGTGCGTGTTTGTGCACATGATTATTCTTATCTTGTGCTTGCTATTGCattgtattgtgattattgCATAGGGTCTGTATTAATCAGTTCACATATGGGCTAATGCTGAGTGTTATAATGGTTTTTCAGAGTTTGCATGTTTCTTCGTGGTTGTGAACGactgtgcgtatgtgtgtgtgtgtgagcaagtgtatgtgtgtgcgtgaatGTTAATGAGATGCCCAGCCCTGCTTCCCTCCCCGGCCCCCTCCCCTGCCCGCtctgccgccgctgctgctcCTTAGCCGGGCCCTGAACTCCGATAGCATGAGCGAGAGAACGGCACTAGGGGCCACCATGGAGACCATGACCCTGGAGGAGCCTGGGGGTGAACAAGCCTCTCCCCGGGTCCCGGGGCCCCTCCGCTGTGGCCCCTGTGCAGTGTGGCCCCGCCAGCAACAGACGTGGCTGTGTGTGGTGCCCTTGCTGATGGGCTTTGTGGGCCTGGGTCTCAGCCTGATGCTACTCAAGTGGATTGTGGTGGGCTCAGTCCAGGACTACGTCCCCACCGACCTGGTGGACGCCAAAGGCATTGGGCAGGACCCCATCTTCCTCTCAAAACCCAGCGCCTTGCCAAAGGGCCCAGATGTCCCCTCGGCATCCACAGCAGCTCCAGCCAATACAATGGGCCCTGGCTCTGCTGCAGATGGGACCGGTGCAGTGCAGAGGACTCAAGCTGGACCTCCTTCTAACCACTCAATCGtcgtcagcagcagcagcagcagcagcagtggaggGAGGGCAGCCGGGGCAGTTGGAGGAGGATCAGGGAACAGAGTCCCTCACCTCCATAACAGGGTAGGCACAAGAGCCAATGGCACTGCCTCCACTCGCCCTGCAGCACCTGGAGGCAAGGAAGTGACCCCACGCAGCACAACGGTCAGAAAGCCTGGCGGCGCAGCCGGAGGCCGAAATGCTCAGCCGTCCTCCAGAGCAGGCCCACCAAGCCCGACCTCAGTCAACACAACTACAGCTACTTCTGCCACTAGTACTACTGCAAAAAGCACAACTTCTACTCGAATGGCCCTACCCACCACCTCTACCCCTACCGCTCCAGCCAGGCCCACTCAGCGCTTGAACCATGGACGCTCTTCTAAGGGCCCATCCACCAAGCCCACACGTCCTCACCACCGCTTCAGAACCCTTGCACCTACAACCCCGACGGTCCGTTCCGAGTTCTTCAAGCCCTGCCAAGACAGCCAAGAGCTCGCCTTCTGTCTGAACGAGGGAGAGTGCTTCATTATCGAGACAGTGGCAGGAGTGCATAGACACTGCAGGTGTAAAGAGGGTTACCGCGGGCTTCGCTGTGACCAGTTTGTGCCGAAGACGGACTCCATCCTATCTGATCCAACAGACGAGCTGGGTATCGAGTTTATGGAGAGTGGAGAGACGTACCAGAGGCAGATCCTGTCAATCTTCACCATCGCCATGGGAATCAGCTTGCTGGGAGTGGCCTGCATGGCTCTTTACTGCAGAAACAAGAGACAAAGGGAAAAACACAGAGTCCACCTGACAGAGATGCGCAATCTGAGGGACTGCAGTGTCAATGCCTTGCGGCTCATGTCCAAATCCAGCTCCGGTGCTGAATGTGGCCTCCAGCCTCAAAAGtgctgTAAAGCCCACGGGTCCTCCCCTGCACCCGGCAGAGGTACAGTGCACAGCAGCTCCaaacccagcagcagcagcctgtctaCAGGGAAACGCCGCAGCTGTTCCTTCTCCACTAGTCCTGCTATAAAACAGAAGATACCCAGTCACAGATCTGCTGCACGATGGACTCCGCCCATCTCCAGAGCAGGACATCATCTGATTGGAGGATCAAAGGATTCTATTCACAGCTACAAACACCTCCAAGAGGTGGAGGCCACAGACATGACATCAGAATCCTTGAGAAGGTGCCAGTCCCACACTGATGGCAATCAGCAGCACAGCCACTTGTATTTGAATATGCAAACTGTGTCCTCTGTGCCTACCAGAGGAAGACTGGCCTGCACTGACGTTCCCTGCACTCGACTGGATCAGGGAACGGCTTTTCCTCGCCCTTCTCACCGCACCTGCTCTGTTCCCATCATCCCCTCTGTCCAGGCGTCTAATGTGGGGGACAGGTCCGGCGACGAAGGCGGTGCCACGCTGCTTTACAGAAGTGGAGTTTCGGCCAGCTACACACTAATCAATCCCGAGACTGAGGCGGAGTCACTGGCCAATTCCAGCCAATCACTGGCCACCCCCTCCACCGGGTCGCACGGACTGACATGCTCAGAGTCCGTGCTGGCGGTGGGCCCAACTAAACACAAAAGCCTTGTCACTTACACAACAGCCTTGGGAGCAGGTACAGACTCCAGTAGAGCAAAGACTGTCATCTCCATGACCGTATTAGCGTCGTCCAGCCTGTCCAAATCCACTGGAAAACTGGAACGCCGGCCCACGCGGTCAGCTCGCAGAGGGAGTCTAAGGGAAGATTCCGCTGTTGGTTTACAAACATCATTTTCCAAGGGAGAGAAAGACTTCTATCTGTCCAGTGAGCTTAGAGGTGTGCCCTGTCTCACACCTCCTAAAAGCTGATTGGATAAATCAATAGATCTTATGAATTGCATACACAAATGTTTATTGGGGGAGAGACAGGGTGGGACACGGCCTCCCCAAATCTCCACACCCTGGTGTTGACCAATCACAGGACTCTCTGAACTACATACACGGATTACAGAGAGAACCCTGCTAAAGTGACAGAATTTCAAACCACTGGATAACTAAGAACACAATGTGAATAAATTATGAAGAGGTTAAAGACTATCGTTGGGATGTTGATTTAAAGAGGTATGAAAGAAGATAAAAGATTTATATGCcactatttaacaaaaaaaagcttctacTTAGAAACCAAATAGTGTCATCTCTATGTTGTTTctctattgtaaaaaaataaaaaaataaaatataatagatGTCATAACTACGTGTATGTCATATATATgtcattatataaatatatatatgacatacaaagagatttaaaaaaataaagacgcAGAATATGGTAAAGAAGAagcttttcattttaaacagctcTGCCATCCTATGATAACCCAGTCCAACTCTGTCTTTTGTCTGTTATGCTTGAGGACGTGAGGAGAGTTTGGTGGTTCATGAATAAAATCTGTATGTCACCTTGT

Function

NR:

description
PREDICTED: pro-neuregulin-3, membrane-bound isoform-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668932.1 True 4085 mRNA 0.52 9 4219467 4440792
XM_022668933.1 False 4081 mRNA 0.52 9 4219467 4440791

Neighbor

gene id symbol gene type direction distance location
LOC103021465 LOC108426423,LOC108273974,LOC107754115 coding downstream 57611 4148188 ~ 4161856 (-)
LOC103036928 NA coding downstream 121512 4088103 ~ 4097955 (-)
LOC103038619 NA coding downstream 326102 3884014 ~ 3893365 (-)
LOC103039858 LOC108426464 coding downstream 349291 3861574 ~ 3870176 (-)
ccdc189 NA coding downstream 379910 3836623 ~ 3839557 (-)
atrnl1 atrnl1,atrnl1b,LOC107755548,LOC107689951,LOC107708169 coding upstream 151242 4592034 ~ 4703993 (-)
LOC103022618 cyth1,cyth1b,LOC103022618,LOC108274176,LOC108426518,LOC104925066,LOC107755486,LOC107690912,LOC107684080,LOC107581598 coding upstream 270308 4711100 ~ 4791734 (-)
LOC111192353 LOC106633734 coding upstream 320794 4761586 ~ 4763069 (-)
sfxn2 sfxn2,LOC107722238,LOC107581595,LOC107755483 coding upstream 379130 4819922 ~ 4847408 (-)
LOC103024913 trim8,trim8b,LOC107581594,LOC107684075,LOC107565801,LOC107755490 coding upstream 412215 4853007 ~ 4868129 (-)
G34311 NA non-coding downstream 41814 4171053 ~ 4177653 (-)
G34300 NA non-coding downstream 84180 4133286 ~ 4135287 (-)
G34298 bms1,LOC106605356,LOC107566656,LOC103354837,LOC108228954 non-coding downstream 94646 4112381 ~ 4124821 (-)
G34265 LOC108426470 non-coding downstream 215665 4002924 ~ 4003802 (-)
G34240 NA non-coding downstream 293777 3925481 ~ 3925690 (-)
G34342 NA non-coding upstream 21085 4461877 ~ 4509252 (-)
G34381 NA non-coding upstream 145653 4586445 ~ 4586858 (-)
G34385 NA non-coding upstream 186890 4627682 ~ 4628175 (-)
G34429 NA non-coding upstream 333021 4773813 ~ 4774992 (-)
G34422 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802,LOC107690949 non-coding upstream 358319 4799111 ~ 4883208 (-)
G34214 NA other downstream 335998 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 430275 3783125 ~ 3789192 (-)
G34046 NA other downstream 1025090 3181168 ~ 3194377 (-)
G33904 NA other downstream 1910138 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 2023372 2194757 ~ 2196095 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 530906 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 814827 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 1462796 5903588 ~ 5928154 (-)
G34770 NA other upstream 1495043 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 1608209 6049001 ~ 6147311 (-)

Expression


Co-expression Network