vti1a (vti1a,LOC107566351,LOC107702459)


Basic Information

Item Value
gene id vti1a
gene name vti1a,LOC107566351,LOC107702459
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5400928 ~ 5571634 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668946.1
GGGTTCAGTAACACAGCCAGGAAGTGACGGTGACGTCAACAACAACATTGGCTACAGCAGCAGGAGAGTATCCACCGCTATCTGTCGGTAACACACCAGAACCCACCGTTTACAGACATGTCGTCCGATTTTGAAGCCTACGAGCAGGAGTTCGGCACCCTCACTGCGGAAATTACCAACAAAACCGGCAGAATACCCAAACTCAGCGGCGAGGAGAAGACGCAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAGTTGTTGGAGCAGATGGATCTGGAGGTGCGCGAGATTCCTGTCCAGAGCAGAGGAATGTACAACAGCCGCCTGAAGAGCTACAAGCAGGAGCTGGAGAAGCTGGAGAAAGACTTTAAAAGGTCACGTATTGCCTACAGTGATGAGGTGCGGAACGAGCTCCTCGGGGATGACGGCAGCTCCTCTGAGAATCAGTTGATAAAGTTGCGTGAAGAGAGAGCACATCTGTTGGACAACACAGAGATGCTGGAAAGGTCATCTCGGAGACTGGAGGCTGGCTACCAGATAGCTGTGGAAACTGAGCAAATAGGACAGGAGATCCTATCCAACCTGCACAGCGACCGTGAGAAGATCCAGAGATCCAGAGATCGGCTGAGAGAGACCGATGCTAACCTGGGCAAGAGCTCGCGGGTCCTGACGGGCATGCTGAGAAGGATCATTCAGAATCGCATCCTGGTCTTCATCCTGGGCGCCATCATCCTCCTCACCATCGTCCTGGCCATCTATTTCAATCTGCGAGGGCACTGATCTCCACTGACtggtcctgtgtgtgtgcgtgtgtgtgtgtgtgtgagcgtgtgattAATAGCGACAAAAGCGGGCTGGAGTAATTAGAACAAATTGTTCACATGAATCATTCCTGGTGGGCAGTGACAGATGATCTCCtctgctctttctctcgctcttccAGAGCAGAGCTACAACTGGCTCTTCTATCTCTACATCCTATTTATGTTTTACGTTTATATTACTAGGACTGTACTCTTCCATCCTTTTAGCATGGCATCTCCATTTTGACTCCCTATAGACTGGCCATGTGTGGACATCTGGACCTAGGTGGACCAATAACAGCAGGAGATTGGAAATCTTGATTGGGACGGGTGGGGGAAGGGCTTTCTTTACTACGACctgctgtattattttattaatattatttttttactttttgtcccGATAATGTTTAAATTCCaactatatgtatgtatgtatgtatgtatgtgcacaagcatgtgtgtgtgtgtgtgtatttctgtatacatatacatagtCCCAGCATAGTGTCCTTACTCTCTCCCGGGTGTGTGGCGTGTGCAGAAAGGGCCTTACAGTCAGGCCCCCAGTGCAGCAGCACTTAGCACACAGTGCAGAATCACACACTACACACGGCCCAAAGGTCAATGCCTTTagcagcagacacacacacgcctcTCTCAGTGGAGCTTCATCCAGGATTAGTAGCTTCTCACGCTGTTCTTCTAAGGTCAATAAAAGGCCTTGCGTGTGTTCTGGCAAACCAGCAGGACCACTCCCGAATCCTATGGCCGCTCATAGCTTTACTAATGATGTTTGGCATAATCATTCGTTGGCGCACACACCGAGTACTAATGAGGACTcttatctgtatttatttcatgTTGATGGTTATTTGTTATCTGTATTGATGTGTTTTCCCCTCTTTCAGTGGATTTGAAACTGATTTTAGTGAAATGTAAAGGCTATTGTTTTTCTCTGACATAAAGATTCTAAACATTAAA
>XM_022668947.1
GGTTCAGTAACACAGCCAGGAAGTGACGGTGACGTCAACAACAACATTGGCTACAGCAGCAGGAGAGTATCCACCGCTATCTGTCGGTAACACACCAGAACCCACCGTTTACAGACATGTCGTCCGATTTTGAAGCCTACGAGCAGGAGTTCGGCACCCTCACTGCGGAAATTACCAACAAAACCGGCAGAATACCCAAACTCAGCGGCGAGGAGAAGACGCAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAGTTGTTGGAGCAGATGGATCTGGAGGTGCGCGAGATTCCTGTCCAGAGCAGAGGAATGTACAACAGCCGCCTGAAGAGCTACAAGCAGGAGCTGGAGAAGCTGGAGAAAGACTTTAAAAGGTCACGTATTGCCTACAGTGATGAGGTGCGGAACGAGCTCCTCGGGGATGACGGCAGCTCCTCTGAGAATCAGAGAGCACATCTGTTGGACAACACAGAGATGCTGGAAAGGTCATCTCGGAGACTGGAGGCTGGCTACCAGATAGCTGTGGAAACTGAGCAAATAGGACAGGAGATCCTATCCAACCTGCACAGCGACCGTGAGAAGATCCAGAGATCCAGAGATCGGCTGAGAGAGACCGATGCTAACCTGGGCAAGAGCTCGCGGGTCCTGACGGGCATGCTGAGAAGGATCATTCAGAATCGCATCCTGGTCTTCATCCTGGGCGCCATCATCCTCCTCACCATCGTCCTGGCCATCTATTTCAATCTGCGAGGGCACTGATCTCCACTGACtggtcctgtgtgtgtgcgtgtgtgtgtgtgtgtgagcgtgtgattAATAGCGACAAAAGCGGGCTGGAGTAATTAGAACAAATTGTTCACATGAATCATTCCTGGTGGGCAGTGACAGATGATCTCCtctgctctttctctcgctcttccAGAGCAGAGCTACAACTGGCTCTTCTATCTCTACATCCTATTTATGTTTTACGTTTATATTACTAGGACTGTACTCTTCCATCCTTTTAGCATGGCATCTCCATTTTGACTCCCTATAGACTGGCCATGTGTGGACATCTGGACCTAGGTGGACCAATAACAGCAGGAGATTGGAAATCTTGATTGGGACGGGTGGGGGAAGGGCTTTCTTTACTACGACctgctgtattattttattaatattatttttttactttttgtcccGATAATGTTTAAATTCCaactatatgtatgtatgtatgtatgtatgtgcacaagcatgtgtgtgtgtgtgtgtatttctgtatacatatacatagtCCCAGCATAGTGTCCTTACTCTCTCCCGGGTGTGTGGCGTGTGCAGAAAGGGCCTTACAGTCAGGCCCCCAGTGCAGCAGCACTTAGCACACAGTGCAGAATCACACACTACACACGGCCCAAAGGTCAATGCCTTTagcagcagacacacacacgcctcTCTCAGTGGAGCTTCATCCAGGATTAGTAGCTTCTCACGCTGTTCTTCTAAGGTCAATAAAAGGCCTTGCGTGTGTTCTGGCAAACCAGCAGGACCACTCCCGAATCCTATGGCCGCTCATAGCTTTACTAATGATGTTTGGCATAATCATTCGTTGGCGCACACACCGAGTACTAATGAGGACTcttatctgtatttatttcatgTTGATGGTTATTTGTTATCTGTATTGATGTGTTTTCCCCTCTTTCAGTGGATTTGAAACTGATTTTAGTGAAATGTAAAGGCTATTGTTTTTCTCTGACATAAAGATTCTAAACATTAAA
>XM_022668948.1
GGGTTCAGTAACACAGCCAGGAAGTGACGGTGACGTCAACAACAACATTGGCTACAGCAGCAGGAGAGTATCCACCGCTATCTGTCGGTAACACACCAGAACCCACCGTTTACAGACATGTCGTCCGATTTTGAAGCCTACGAGCAGGAGTTCGGCACCCTCACTGCGGAAATTACCAACAAAACCGGCAGAATACCCAAACTCAGCGGCGAGGAGAAGACGCAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAGTTGTTGGAGCAGATGGATCTGGAGGTGCGCGAGATTCCTGTCCAGAGCAGAGGAATGTACAACAGCCGCCTGAAGAGCTACAAGCAGGAGCTGGAGAAGCTGGAGAAAGACTTTAAAAGGTCACGTATTGCCTACAGTGATGAGGTGCGGAACGAGCTCCTCGGGGATGACGGCAGCTCCTCTGAGAATCAGTTGATAAAGTTGCGTGAAGAGAGAGCACATCTGTTGGACAACACAGAGATGCTGGAAAGGTCATCTCGGAGACTGGAGGCTGGCTACCAGATAGCTGTGGAAACTGAGCAAATAGGACAGGAGATCCTATCCAACCTGCACAGCGACCGTGAGAAGATCCAGAGATCCAGAGATCGGCTGAGAGAGACCGATGCTAACCTGGGCAAGAGCTCGCGGGTCCTGACGGGCATGCTGAGAAGGTAAGAGGAAGGATCATTCAGAATCGCATCCTGGTCTTCATCCTGGGCGCCATCATCCTCCTCACCATCGTCCTGGCCATCTATTTCAATCTGCGAGGGCACTGATCTCCACTGACtggtcctgtgtgtgtgcgtgtgtgtgtgtgtgtgagcgtgtgattAATAGCGACAAAAGCGGGCTGGAGTAATTAGAACAAATTGTTCACATGAATCATTCCTGGTGGGCAGTGACAGATGATCTCCtctgctctttctctcgctcttccAGAGCAGAGCTACAACTGGCTCTTCTATCTCTACATCCTATTTATGTTTTACGTTTATATTACTAGGACTGTACTCTTCCATCCTTTTAGCATGGCATCTCCATTTTGACTCCCTATAGACTGGCCATGTGTGGACATCTGGACCTAGGTGGACCAATAACAGCAGGAGATTGGAAATCTTGATTGGGACGGGTGGGGGAAGGGCTTTCTTTACTACGACctgctgtattattttattaatattatttttttactttttgtcccGATAATGTTTAAATTCCaactatatgtatgtatgtatgtatgtatgtgcacaagcatgtgtgtgtgtgtgtgtatttctgtatacatatacatagtCCCAGCATAGTGTCCTTACTCTCTCCCGGGTGTGTGGCGTGTGCAGAAAGGGCCTTACAGTCAGGCCCCCAGTGCAGCAGCACTTAGCACACAGTGCAGAATCACACACTACACACGGCCCAAAGGTCAATGCCTTTagcagcagacacacacacgcctcTCTCAGTGGAGCTTCATCCAGGATTAGTAGCTTCTCACGCTGTTCTTCTAAGGTCAATAAAAGGCCTTGCGTGTGTTCTGGCAAACCAGCAGGACCACTCCCGAATCCTATGGCCGCTCATAGCTTTACTAATGATGTTTGGCATAATCATTCGTTGGCGCACACACCGAGTACTAATGAGGACTcttatctgtatttatttcatgTTGATGGTTATTTGTTATCTGTATTGATGTGTTTTCCCCTCTTTCAGTGGATTTGAAACTGATTTTAGTGAAATGTAAAGGCTATTGTTTTTCTCTGACATAAAGATTCTAAACATTAAA
>XM_022668949.1
GGTTCAGTAACACAGCCAGGAAGTGACGGTGACGTCAACAACAACATTGGCTACAGCAGCAGGAGAGTATCCACCGCTATCTGTCGGTAACACACCAGAACCCACCGTTTACAGACATGTCGTCCGATTTTGAAGCCTACGAGCAGGAGTTCGGCACCCTCACTGCGGAAATTACCAACAAAACCGGCAGAATACCCAAACTCAGCGGCGAGGAGAAGACGCAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAGTTGTTGGAGCAGATGGATCTGGAGGTGCGCGAGATTCCTGTCCAGAGCAGAGGAATGTACAACAGCCGCCTGAAGAGCTACAAGCAGGAGCTGGAGAAGCTGGAGAAAGACTTTAAAAGGTCACGTATTGCCTACAGTGATGAGGTGCGGAACGAGCTCCTCGGGGATGACGGCAGCTCCTCTGAGAATCAGAGAGCACATCTGTTGGACAACACAGAGATGCTGGAAAGGTCATCTCGGAGACTGGAGGCTGGCTACCAGATAGCTGTGGAAACTGAGCAAATAGGACAGGAGATCCTATCCAACCTGCACAGCGACCGTGAGAAGATCCAGAGATCCAGAGATCGGCTGAGAGAGACCGATGCTAACCTGGGCAAGAGCTCGCGGGTCCTGACGGGCATGCTGAGAAGGTAAGAGGAAGGATCATTCAGAATCGCATCCTGGTCTTCATCCTGGGCGCCATCATCCTCCTCACCATCGTCCTGGCCATCTATTTCAATCTGCGAGGGCACTGATCTCCACTGACtggtcctgtgtgtgtgcgtgtgtgtgtgtgtgtgagcgtgtgattAATAGCGACAAAAGCGGGCTGGAGTAATTAGAACAAATTGTTCACATGAATCATTCCTGGTGGGCAGTGACAGATGATCTCCtctgctctttctctcgctcttccAGAGCAGAGCTACAACTGGCTCTTCTATCTCTACATCCTATTTATGTTTTACGTTTATATTACTAGGACTGTACTCTTCCATCCTTTTAGCATGGCATCTCCATTTTGACTCCCTATAGACTGGCCATGTGTGGACATCTGGACCTAGGTGGACCAATAACAGCAGGAGATTGGAAATCTTGATTGGGACGGGTGGGGGAAGGGCTTTCTTTACTACGACctgctgtattattttattaatattatttttttactttttgtcccGATAATGTTTAAATTCCaactatatgtatgtatgtatgtatgtatgtgcacaagcatgtgtgtgtgtgtgtgtatttctgtatacatatacatagtCCCAGCATAGTGTCCTTACTCTCTCCCGGGTGTGTGGCGTGTGCAGAAAGGGCCTTACAGTCAGGCCCCCAGTGCAGCAGCACTTAGCACACAGTGCAGAATCACACACTACACACGGCCCAAAGGTCAATGCCTTTagcagcagacacacacacgcctcTCTCAGTGGAGCTTCATCCAGGATTAGTAGCTTCTCACGCTGTTCTTCTAAGGTCAATAAAAGGCCTTGCGTGTGTTCTGGCAAACCAGCAGGACCACTCCCGAATCCTATGGCCGCTCATAGCTTTACTAATGATGTTTGGCATAATCATTCGTTGGCGCACACACCGAGTACTAATGAGGACTcttatctgtatttatttcatgTTGATGGTTATTTGTTATCTGTATTGATGTGTTTTCCCCTCTTTCAGTGGATTTGAAACTGATTTTAGTGAAATGTAAAGGCTATTGTTTTTCTCTGACATAAAGATTCTAAACATTAAA

Function

symbol description
vti1a Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in Golgi vesicle transport; macroautophagy; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi apparatus; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Orthologous to human VTI1A (vesicle transport through interaction with t-SNAREs 1A).

NR:

description
PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1A isoform X3

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K08493 VTI1; vesicle transport through interaction with t-SNAREs 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668946.1 False 1799 mRNA 0.47 9 5400928 5571634
XM_022668947.1 False 1777 mRNA 0.47 8 5400928 5571633
XM_022668948.1 True 1810 mRNA 0.47 9 5400928 5571634
XM_022668949.1 False 1788 mRNA 0.47 8 5400928 5571633

Neighbor

gene id symbol gene type direction distance location
LOC103030716 crygmxl2,LOC103030716,LOC108426411,LOC106516994,LOC104933141,LOC103368160,LOC107581669,LOC107702435 coding downstream 235303 5163950 ~ 5165625 (-)
LOC103029658 crygmx,LOC103029658,LOC108426431,LOC107684144,LOC107566847,LOC107755411,LOC107581668 coding downstream 237462 5160908 ~ 5163466 (-)
entpd1 NA coding downstream 275730 5099968 ~ 5125198 (-)
mrpl43 mrpl43,LOC107722220,LOC107581592,LOC107565786 coding downstream 470221 4927516 ~ 4930707 (-)
mfsd13a mfsd13a,LOC107565800,LOC107581593,LOC107684076,LOC107690908,LOC107755491 coding downstream 522169 4870049 ~ 4878759 (-)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107581566,LOC107722228,LOC107684041 coding upstream 7696 5579330 ~ 5596438 (-)
tectb tectb,LOC107755437,LOC107566341,LOC107702437,LOC107722201 coding upstream 28734 5600368 ~ 5687159 (-)
nrap nrap,LOC107755535 coding upstream 199985 5771619 ~ 5803122 (-)
LOC103041412 LOC103041412,LOC108426492 coding upstream 247088 5818722 ~ 5822431 (-)
dclre1a NA coding upstream 271344 5842978 ~ 5852808 (-)
G34682 NA non-coding downstream 9608 5391095 ~ 5391320 (-)
G34556 NA non-coding downstream 207069 5191033 ~ 5193859 (-)
G34543 aldh18a1,LOC107707764 non-coding downstream 248515 5151372 ~ 5152413 (-)
G34544 aldh18a1,LOC107684039 non-coding downstream 249965 5150310 ~ 5150963 (-)
G34542 NA non-coding downstream 256872 5143724 ~ 5144056 (-)
G34688 zdhhc6,LOC107684040,LOC107722226,LOC107581631 non-coding upstream 1839 5573473 ~ 5574758 (-)
G34708 NA non-coding upstream 73272 5644906 ~ 5645105 (-)
G34713 NA non-coding upstream 87390 5659024 ~ 5659904 (-)
G34719 cpn1,LOC107722209,LOC107684044 non-coding upstream 105784 5677418 ~ 5681939 (-)
G34760 nhlrc2 non-coding upstream 290823 5862457 ~ 5867932 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other downstream 38442 5255619 ~ 5362486 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 405015 4971698 ~ 4995913 (-)
G34214 NA other downstream 1517459 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 1611736 3783125 ~ 3789192 (-)
G34046 NA other downstream 2206551 3181168 ~ 3194377 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 331954 5903588 ~ 5928154 (-)
G34770 NA other upstream 364201 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 477367 6049001 ~ 6147311 (-)
LOC103026268 bahcc1 other upstream 795050 6366684 ~ 6513701 (-)
G34953 NA other upstream 965387 6537021 ~ 6541364 (-)

Expression


Co-expression Network