tectb (tectb,LOC107755437,LOC107566341,LOC107702437,LOC107722201)


Basic Information

Item Value
gene id tectb
gene name tectb,LOC107755437,LOC107566341,LOC107702437,LOC107722201
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5600368 ~ 5687159 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668953.1
ATATTATATGTAGCCTCATGGAGAGGATATTTTTAGCTAGATCATTTTAAGGATTTCTTGAAATATGCAACACTCAGATGAAGTCTATGAGCAACAATAGAAGGAAGTTTGCTAGGAAAGCCATGGTATAAGGTGACAGGGGCCAACAGAAGCTGAATAAGAGCGACCTTGATGACACTGTAGCCCTTAAATTCCATGGCACGACACCAGAGAGGGTGGGATGCATTAGATAACTGCTAAAAGCACGCTAGTGCACCTGTTCCTCTGCCTGACTGAAGGTCATTATGTAACAAAGCACGAGTTTGAAAGGAACCCAACCCTGCTCTCCCTTACCTGGGAAACCCCACGTCATTCCTCAGGGCTTATAGATGTGAATTAAGCAAGGACTTCTGTAGATGATGTTTAATGAATGGCTTAGATTAATGAAGCACCTATGTGTTGACTTAATACTATATCTTTATGTTAGCTATGTAGAACAGATATGTTGCCGTTGTTTAAAAATGCTAAGAAAATGGTCTTCCCCTGAGACACTGTTAATTTAAAAGTCAATGTCTGGCAAGCACAGAAAGCTTTTGTGCTTTGGTTCACAATGCTATCACCAAATGGCCTCGCCAGACTGgcagacagaggaagagagggggGTTACTGACTGTCTGCAGAAATATAAAACGGCCCCCCTGCCGGAATCGATGAACTCTACCTGAAACCTGTGCTTAGTTACCACTAATCGGCCAACCGCACCTAGACCATGACCATCTGGTAGATAACCAAGCAAAACTTCACGAGCCAGCGCTGGACATGGCAGCTGTTGGCgctcttttctttttgcttCCAGTTTCTTGGGCCTGCGCTCCTCAGAAAGCTGATTATGTTATGGTTTCCTGTTTTCCAAATGCAATCATTGCGAATGTTCCTGAGTGCCCGTACGGATGGGAGATAGGGCAGTTGTCTCTGGGTGGTGTGTGCTATTCAGGGATCAACACTCCTGGCTTCTACCGCTTTACAATCCCTGACCTCACACCCAAAAACCACTCGTACTGTGGCACCCTGTCTGAGTATGTTGGAGGCAAAGACCCGAAGTACATTTTCTACAACTCCATCGTGTCGAACGATTCCTCGCTCACAGTGCGGAACCAGCCAGTCAACTACACCTTCAGCTGCACATACAAAGCGGCTTACCTGGTCAACAACGCGGTCTTCAGCCAAAGAGTGGCAACAGTTTATGTCAACAACGGGAGTTTAGGTTCTTTTAAGTCTCAGTTGTCTATGAACGTTTTCACAAATTCAAAGTTCCTGTATGCTAAGGATGCTCCATATGTTATTGATACATCAGAAATTGGCTCAGAGGTTTTTATTGGTATTGAAGCAAAAGGACTGAGTAACAGGTTTAAGGTGGTTATAACAAACTGCTGGGCAACACCTACTCCATATTCAACAGACAGGAAGAGGTGGAGCTTGATTGTCAATAGCTGCTCCTCAGATAATACAGTCACCATATTTGAGAATGCCAAAGACAGTCGCTCCATGTTCAAGTTTAATTCGTTCCGCTTTCAGCGCTTAGAGAAGGTGTCCACGGTCTGGCTTCACTGTGAAGTTCAAGTGTGTGATGGAGAAAAGCTCTTCTGTCAGCCGACTCCATGCACTTCGAGGAGCACCAAACTGCAATCTGACCCCAGCGGAGGAATTTTGACAATGGAGTTTCAAATCAGAGCTGAGCATTCCTCCAGTTATACACATCTTGCAGGCACGTTTTTATGCATGCTGTGTATGATTCTGCTGAATGCCATTCTAGGTTATACCAGTTTGTAAAGGTGGATGGTTTGGTAAATTCTCAAAACGCAGTGAAACACACTTGCTGCACAATGttacaaaacaattaaattgcattttttgtttgcaatatttATTGCgaaatttaaaaacacagaaagttTTACCATAATCCACCAGAAAACACAAGATATCAAAGATCCAACATGTAATGAAATAATACAAGAATAGGAGAAACTGTGTGATATTGGGCTGATATTTGATTATGGCATTTCCTTTTTATCATATTCCAAAAAAGCATGTCCTGCAATTTTGATTATTGCTCATGCTTAAACTTTGTACTGTGCAgccctcttacacacacacacacacacacacacacatacacacactcacacagaacaGCCATACAAGGGTCTCAGGGAGTGTAACACACATTCCTCCTCCTAAACACTTGCATACATCTTCACTTTGTTTAGCAGTCTTGTACACTTGAAGCAGATATGTGAGACTAGTTACATAGTTAAAATGCACAAGAGTCGGAAGCATGACCCTCACTGATATCCTGCTCCAGTGGCAAGAAAATACATCTTGCTTTGGTTTGATTAGAAATAATGTCTTTATAATATTTGTGTCTTAATTAAAAAACTACATCTAA
>XM_022668954.1
GATATTATATGTAGCCTCATGGAGAGGATATTTTTAGCTAGATCATTTTAAGGATTTCTTGAAATATGCAACACTCAGATGAAGTCTATGAGCAACAATAGAAGGAAGTTTGCTAGGAAAGCCATGGTATAAGGTGACAGGGGCCAACAGAAGCTGAATAAGAGCGACCTTGATGACACTGTAGCCCTTAAATTCCATGGCACGACACCAGAGAGGGTGGGATGCATTAGATAACTGCTAAAAGCACGCTAGTGCACCTGTTCCTCTGCCTGACTGAAGGTCATTATGTAACAAAGCACGAGTTTGAAAGGAACCCAACCCTGCTCTCCCTTACCTGGGAAACCCCACGTCATTCCTCAGGGCTTATAGATGTGAATTAAGCAAGGACTTCTGTAGATGATGTTTAATGAATGGCTTAGATTAATGAAGCACCTATGTGTTGACTTAATACTATATCTTTATGTTAGCTATGTAGAACAGATATGTTGCCGTTGTTTAAAAATGCTAAGAAAATGGTCTTCCCCTGAGACACTGTTAATTTAAAAGTCAATGTCTGGCAAGCACAGAAAGCTTTTGTGCTTTGGTTCACAATGCTATCACCAAATGGCCTCGCCAGACTGgcagacagaggaagagagggggGTTACTGACTGTCTGCAGAAATATAAAACGGCCCCCCTGCCGGAATCGATGAACTCTACCTGAAACCTGTGCTTAGTTACCACTAATCGGCCAACCGCACCTAGACCATGACCATCTGGTAGATAACCAAGCAAAACTTCACGAGCCAGCGCTGGACATGGCAGCTGTTGGCgctcttttctttttgcttCCAGTTTCTTGGGCCTGCGCTCCTCAGAAAGCTGATTATGTTATGGTTTCCTGTTTTCCAAATGCAATCATTGCGAATGTTCCTGAGTGCCCGTACGGATGGGAGATAGGGCAGTTGTCTCTGGGTGGTGTGTGCTATTCAGGGATCAACACTCCTGGCTTCTACCGCTTTACAATCCCTGACCTCACACCCAAAAACCACTCGTACTGTGGCACCCTGTCTGAGTATGTTGGAGGCAAAGACCCGAAGTACATTTTCTACAACTCCATCGTGTCGAACGATTCCTCGCTCACAGTGCGGAACCAGCCAGTCAACTACACCTTCAGCTGCACATACAAAGCGGCTTACCTGGTCAACAACGCGGTCTTCAGCCAAAGAGTGGCAACAGTTTATGTCAACAACGGGAGTTTAGGTTCTTTTAAGTCTCAGTTGTCTATGAACGTTTTCACAAATTCAAAGTTCCTGTATGCTAAGGATGCTCCATATGTTATTGATACATCAGAAATTGGCTCAGAGGTTTTTATTGGTATTGAAGCAAAAGGACTGAGTAACAGGTTTAAGGTGGTTATAACAAACTGCTGGGCAACACCTACTCCATATTCAACAGACAGGAAGAGGTGGAGCTTGATTGTCAATAGCTGCTCCTCAGATAATACAGTCACCATATTTGAGAATGCCAAAGACAGTCGCTCCATGTTCAAGTTTAATTCGTTCCGCTTTCAGCGCTTAGAGAAGGTGTCCACGGTCTGGCTTCACTGTGAAGTTCAAGTGTGTGATGGAGAAAAGCTCTTCTGTCAGCCGACTCCATGCACTTCGAGGAGCACCAAACTGCAATCTGACCCCAGCGGAGGAATTTTGACAATGGAGTTTCAAATCAGAGCTGAGCATTCCTCCAGTTATACACATCTTGCAGCATACTGGATAGAAGCTTATCTGCTCTGGCCTTTTCTATAGTGAGCTGGGTGGTCCTCTCCTCTACTACTTCTTCAAGGAAAGGGGGCCTGCTTCCTATGACACGCTGAAGCTGTCCGAAATCCAGTTTTCTTCCCTCTCATCTTTCTCTTCCTGAAAAGCCATAAGCTGATGCCAGATGAAGAAGCTGAAAATGAGCCACTTTGACAAGGGCCACATCGTGATGGCTAGAACATCTacaaaacatcaggcaggtctttcATGGGGTTTCTGGAAGTTTTCTGAAGTGGTCCAAGAAAGGACAATCAGgaaaaccctaaccctaattgcTGCAATCTATGGGGACTTGATGGACCTGGCACTACTTGATTTATATCTA

Function

symbol description
tectb Predicted to be an extracellular matrix structural constituent. Acts upstream of or within otolith development. Predicted to be active in cell surface and extracellular space. Is expressed in brain; macula communis; and pleuroperitoneal region. Orthologous to human TECTB (tectorin beta).

NR:

description
beta-tectorin

GO:

id name namespace
GO:0048840 otolith development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668953.1 True 2428 mRNA 0.42 13 5606621 5687158
XM_022668954.1 False 2123 mRNA 0.45 14 5600368 5687159

Neighbor

gene id symbol gene type direction distance location
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107581566,LOC107722228,LOC107684041 coding downstream 3930 5579330 ~ 5596438 (-)
vti1a vti1a,LOC107566351,LOC107702459 coding downstream 28734 5400928 ~ 5571634 (-)
LOC103030716 crygmxl2,LOC103030716,LOC108426411,LOC106516994,LOC104933141,LOC103368160,LOC107581669,LOC107702435 coding downstream 434743 5163950 ~ 5165625 (-)
LOC103029658 crygmx,LOC103029658,LOC108426431,LOC107684144,LOC107566847,LOC107755411,LOC107581668 coding downstream 436902 5160908 ~ 5163466 (-)
entpd1 NA coding downstream 475170 5099968 ~ 5125198 (-)
nrap nrap,LOC107755535 coding upstream 84460 5771619 ~ 5803122 (-)
LOC103041412 LOC103041412,LOC108426492 coding upstream 131563 5818722 ~ 5822431 (-)
dclre1a NA coding upstream 155819 5842978 ~ 5852808 (-)
LOC103043680 NA coding upstream 241402 5928561 ~ 5934694 (-)
afap1l2 afap1l2 coding upstream 293830 5980989 ~ 6038592 (-)
G34688 zdhhc6,LOC107684040,LOC107722226,LOC107581631 non-coding downstream 25610 5573473 ~ 5574758 (-)
G34682 NA non-coding downstream 209048 5391095 ~ 5391320 (-)
G34556 NA non-coding downstream 406509 5191033 ~ 5193859 (-)
G34543 aldh18a1,LOC107707764 non-coding downstream 447955 5151372 ~ 5152413 (-)
G34544 aldh18a1,LOC107684039 non-coding downstream 449405 5150310 ~ 5150963 (-)
G34760 nhlrc2 non-coding upstream 175298 5862457 ~ 5867932 (-)
G34765 adrb1 non-coding upstream 199879 5887038 ~ 5891991 (-)
G34769 NA non-coding upstream 240530 5927689 ~ 6012669 (-)
G34791 NA non-coding upstream 355766 6042925 ~ 6043439 (-)
G34829 trub1,LOC107755443,LOC107702428 non-coding upstream 462071 6149230 ~ 6152861 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other downstream 237882 5255619 ~ 5362486 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 604455 4971698 ~ 4995913 (-)
G34214 NA other downstream 1716899 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 1811176 3783125 ~ 3789192 (-)
G34046 NA other downstream 2405991 3181168 ~ 3194377 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 216429 5903588 ~ 5928154 (-)
G34770 NA other upstream 248676 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 361842 6049001 ~ 6147311 (-)
LOC103026268 bahcc1 other upstream 679525 6366684 ~ 6513701 (-)
G34953 NA other upstream 849862 6537021 ~ 6541364 (-)

Expression


Co-expression Network