LOC107197899


Basic Information

Item Value
gene id LOC107197899
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5758072 ~ 5764882 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668956.1
TGACTCTGAACATCACAGCCTCGGTGCTGTGGGTTGTGGAGGTTTCTGGTTTGTTCTGTGTCAAGTATTTCCAGCACCATGCTCCTACTGTTGCTGTTACTGCTGGGCCTGCAGAGCTTCAGTCAGCCTGCAGTAGCAGCTGAGGATCTCCTCTGGGACGTTGTGGGTGGAATACTAGACGCACTGGATGACTATTTCAGTGACTACGAATCTGAGGATTTGGAACTGGATTTGGAAGAAGCGATTAACAGCACCATTGACTGGCTGTTTGAGCTCTTGGATGAGACAGAAATGTGTGACCCGAACCCTTGTCTCAACAATGGAACCTGTGAGCCTGGAATTTTTGGACCTTATGAATGCACCTGCCCCCGACCTTTCATAGGCAAAAAGTGTCAAGATGttgagAATGTGTGTAAGAATGTTAACTGTGGTAAAGGCGAGTGTGTGCGCATTCCAACAGAGCCCTTTTATGAGTGCAAGTGTAGATCCCCCTACCGGCCCCCCAGGTGCAAGAAACCTTCACCCTGTAAGCCGAGCCCCTGTTTGAACGGTGGAAGGTGTGTAagaagcagcaaaaaaaagttcagctgtgtgtgtccTGACACCTATACTGGAACATTCTGCCAAGTTGGTCCTGATGACTGTTATGAAGGAGATGGAGAATCCTACAGGGGGTTTGTAAGTGAAACAGCGAGTGAACTGGAGTGTTTACCCTGGAACTCTCACCTCTTACCATACAGTGACtttgatgaagatgatgatggagtCGGACCTCATAACTACTGCAgGAATCCAGATGGAGAGAGTCAGCCATGGTGCTTTGTCAGACTCCAAGGCAAGCTGCGATGGGACGAATGTAAAATAAAACGCTGCCCTGGAGCAGCCACTGGTAAAGAATCAGATCCCATAGTGCTGACCACACCCTCTCCAAAGATGGACTTCTCTGAGTGTGGGAAATCGCAGCCTACCAGGCCTTTGGGTAAGATCTTTGGGGGAAGAAAAGCTCTACCTGGAGCTCATCCCTGGCAGGCCTCTCTGCAGATTCGCCCCAAAAACAGCACTGATCCCTTCAGGCACTTTTGTGGGGGGATACTCCTAGACTCCTGCTGGATCCTCACCGCAGCTCACTGCATTGAAAGAGTGAATGAGACAGAGCTGCAGGTTGTTCTGGGTGGAGTGAAGCTGGAGGTAAATGAAGCTGCGGACCAGATGTTGGAGGTGGAAGATTATATCGTTCATGAGAACTACACAGAGACGGTTTCTGCCCTCTACAATGACAtagCTCTGCTGAAGCTGAAGGCAGTAGATGGGCAGTGTGCCAGAGAGACCAGGTTCGTAAAGGCTGCCTGTCTGCCCACTGGTCCAATCCCTGATGGGACAGAGTGCATTATATCAGGATATGGAGTCACTGAGCACGATGAAGAAGGCTCCAGTGAGCTTCTGGATGCAAAAGTTCTGCTGATCTCTCAGAAGCAATGCATGGCTCCTCGTGTTTATGGGGATGTGCTAGATGATAGCATGTTCTGTGCTGGACACATGCAAGGAGGAGTGGACACCTGCCAGGGAGACTCTGGGGGTCCTCTGGTCTGTAAGCAGAACAGCACATCTTATATCTACGGTGTGGTGAGCTGGGGTGACGCCTGTGGAAAGAAGAATAAACCTGGCATTTATGCTCGTGTTACCCACTTCCTCGACTGGATCAATGAAAACATGCGCTCCTTATAAAAATGCCTCCTACAGTCTATAACTCTATCTGTACATGTATTACTCCATGAAGCTTTCAGAAATTTGATCCTCTTTACTACACGATGATTCATGCTAAACTAAATCAGTTGACTAGTTGAGAGAAAACACTCAAGTGCAGTAGAATAATGTCTCAGTTTTGTAGCTTAATGAGCCACAAAACGTATTATTTTAGCTCAGTCagttgaaatatatttaaaatgctcATTTGATTCGGTTTGAATTGAGAACAGCAAGcccaaaagctttttttttttcaatttcagaATTTATTAATACAAAATTATGATTCAAATTTTTTGAACAGCAAATACAAGTGTTCCCATGCCGAACAGATTAAAGTCTTGTTTTATTCAAATACAAA

Function

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K08648 HABP2; hyaluronan binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668956.1 True 2107 mRNA 0.46 13 5758072 5764882

Neighbor

gene id symbol gene type direction distance location
cpn1 cpn1,LOC107722209,LOC107684044,LOC107702463 coding upstream 73909 5669067 ~ 5684163 (+)
LOC103038312 NA coding upstream 104395 5642317 ~ 5653677 (+)
gpam gpam,LOC107702461,LOC107755524,LOC107566297,LOC107581571,LOC107722223 coding upstream 116277 5615695 ~ 5641795 (+)
LOC103039360 LOC108426428 coding upstream 150681 5596081 ~ 5607391 (+)
zdhhc6 zdhhc6,LOC107684040,LOC107722226,LOC107755527,LOC107702458 coding upstream 178630 5573465 ~ 5579442 (+)
LOC103045303 NA coding downstream 974 5765856 ~ 5771877 (+)
casp7 casp7 coding downstream 42280 5807162 ~ 5819997 (+)
LOC107197901 NA coding downstream 59506 5824388 ~ 5828009 (+)
plekhs1 NA coding downstream 64752 5829634 ~ 5841843 (+)
nhlrc2 nhlrc2 coding downstream 88025 5852907 ~ 5875214 (+)
G34615 NA non-coding upstream 15628 5739614 ~ 5742444 (+)
G34606 NA non-coding upstream 98170 5659266 ~ 5659902 (+)
G34605 NA non-coding upstream 98873 5658969 ~ 5659199 (+)
G34587 vti1a,LOC107566351,LOC107702459 non-coding upstream 186391 5400955 ~ 5571681 (+)
G34580 NA non-coding upstream 371894 5385883 ~ 5386178 (+)
G34602 NA non-coding downstream 23876 5788758 ~ 5793818 (+)
G34636 dclre1a non-coding downstream 80020 5844902 ~ 5847925 (+)
G34644 ccdc186,LOC107755417,LOC107566113 non-coding downstream 149359 5914241 ~ 5916402 (+)
G34657 NA non-coding downstream 201806 5966688 ~ 5967194 (+)
G34790 NA non-coding downstream 277964 6042846 ~ 6043340 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other upstream 1956 5692522 ~ 5756116 (+)
LOC103025551 sema4g other upstream 833306 4882556 ~ 4924766 (+)
G34309 NA other upstream 1579989 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 2098940 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 3701109 2050742 ~ 2056963 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 481764 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 737263 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 827725 6592607 ~ 6663607 (+)
G34931 NA other downstream 966072 6730954 ~ 6731424 (+)
G35021 NA other downstream 1137535 6902417 ~ 6903997 (+)

Expression


Co-expression Network