LOC103027554


Basic Information

Item Value
gene id LOC103027554
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6553333 ~ 6558835 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669017.1
CTCTGGTATATAACGGGGGGAGATCGGGAGTGGGCGAGCTCTCCGTAAACCGGCTCTGATTCTCTGTCTCAGCTGAAACCACCTGAACGTCAcgtaaacagcagcagcagcagcagcagcagcagatccggctgGCTAACTAACTACTGACTGCTGTGGGGAAAATGAAGGCTGTCAGGAGCTGCCAGGCTGTCTGTGTCCGAGCCGATCTTTAACCATCTCCACCAGCGTTGCTCAGTTGGATCCTGTAGCTTTTTACTGAAGACGTGCAAGTGTGAGCACACAACCTCGCACCCTCTGCCTGACTGCCTACACAATGCACAGCTTTCCCATGTTTACAGAAAGCAGAAAACGGCGTCACAACAGCTGTGATGCAGATGACGCACAAAACCTGCCCCAGGCTAAGCGGTTGGCAAGCCAGCCTTTCTTCCCTGAACTGGGCCGTGATGTTTGGGATTCTGAGTCTTCCAGCAGTGATAGCAGTGGCATTAGCACTCCAGAGAGGCTGACAGGACCGAACTCTACCAACCAGTCTACAGACCAAAAGGAAAATTGCATCCTGAAGGATTCCTGCAGCTCTTCTGGTCATTTGTTTGAAGAGCATGCCATCTCCTTAAATGATAGTGATTCCTCTTACTGTCATATCAATCGCATCCTTAGAAATGCCCATTTCAGTAGCCTGCAATCTCGAGGACAGCCAGGGCCAACATGACCACCTCCGGCTCTGTTAACACCCAACACCCAGGGGCTAAAAGCTCAGTGCATTGGAAACCCCTCAGGAGGGGAATCTTTTGTCACTGTATGTCTTCAGCCCTGGAACCTCCAACATGAGGTTATGTCCTCACTAGCCATTCAGATTAATTCATTTGGTGTCCGCTAGCACTtttctattttcataaaatgtgtGAACGTTTGTTGTTTTCATGTTCATCATGATCTCTGCTTGGGTGCTACAGTACAAAAGGAAACCTCAAATGGCACTAAAGTGCATGTAATATTATGTAACCTTATCCCTTTTACTCAACCAGGCAAATATACTTGGTGCTACATGTTAAACAATACAGTAAAGAGGGGAATGCATTAAGCAGCCTTTGTAGGTGGTGCACCCAGAAATCAGTGAGCAAAGTGTGAAATGGAAGGATGGGGGAGGGGGAAATATGTAGGCAAATGATGTACCAAGGACCTCTGGGAGTGTGTAGTTAGTGTACCTAAGCACATGGGAGTATTCTTGCAGTCTTTCTGTACAACACAGGTTCTTAAACACTGGACCTGGAGTACATCCTGCTCTgtacatttagtgttttttgttttcctgctGAAACACACCCTCTTCAACTCAGGAAGGGCTTCTTAATTATCTGGTTATTTGCATCAGGTGGgctaaaaacagagaaaacactgaaaatacaAAGGGCAGGGAGGTATTACAGGATTATTGTTGGGAACCACTGATGTGAAAGATTGCAGAATAACTCCACAATATTATTTGCCTGCTCTAGTCTGTTCACAGAAGATctgaaaaagtattattaatatataattagcCATAGTTTAATTTCTTCAGAAAGCTTTTGGAGCTCaattatatcatatcatattaacATCTCAGGCATTGGAATTTCAGTCTTATGTGCCATGAAGCCAAGCTTGACGAGTTGTTAACTATAATACAGACCTGTGGGAAACAAGGTTTAGGTTTCCAGTCGCAAACTGTCAGTTGCAAAGTACAGACTACAGCACTGTATCTTAATATTAGGAAATGCAAGCTTGCACTACTCTATAAATGTAGTGGAGTTGGATTATTGCATCATGAACATCTTGAAATATATGTTCGACTCAGGTCTGCTGTGAAGTACTCTTTGTGTGGTGACTTTAGAAACTACCTTCAATACATATTTTGCACAGTGAAGGCTGagtaaagttttttattttattaaagtgcTCATTATTGAATTTTGACACAACACAACTTAAAGAGCCTAAATGAACTAAATGTACTTACAGTAGGTCATTGGGTTCCATGTAATAACATGATTCACAAATCTCCTAGGAACAGACGACGGAAATGCTTAGCCCTAAAATTAGCCTTCTTAACCTGGCACCCAGGGTCTCCAGTAACACCATCAGTCATGAGAAGCATGGGATGGTTTTAGTACCTATGGCTTTACTTGTGCAAGTATATGGGGTTTTAACTCACCTATACTTGGCTGTTGTGTGATGTGATATataaattttatgttttaccatgACATACAGTGACCAGGATTCTTCTTAAAATCATTTCATTTATGGGATATAATTTACAGATAACGCTCACAAATTCTGACCAGACCAGGCTTTAGCAAGATTACAGCGCAAGTAATATGTTTTTGGCCTGAGGCCACAATCTAGCATCCAGGTCAAATTATTAGTGTAAAGTTTTGTGCTTGTATATGAAGGGCACTGATCTGACCCTTTACTCGTCGTGCACTATTCTGAAACACTGTGGTTTTGTCCATGTGAACGACTATCAGCTTTTGATGATAATCATTACAATCACTTTCATGTTTTTATGTCGAATTGTACATAACACATAGCTAGCATATttacattttggatcattgttattttatgaAATTGTCCTAacaatattcaaaataaaagatttttttgta
>XM_022669018.1
ataatgtaaggACTTGACCAGtgctgttaattttttttgctaGCGCTGAAGAATGAGAATCATAAAGATCTTTAACCATCTCCACCAGCGTTGCTCAGTTGGATCCTGTAGCTTTTTACTGAAGACGTGCAAGTGTGAGCACACAACCTCGCACCCTCTGCCTGACTGCCTACACAATGCACAGCTTTCCCATGTTTACAGAAAGCAGAAAACGGCGTCACAACAGCTGTGATGCAGATGACGCACAAAACCTGCCCCAGGCTAAGCGGTTGGCAAGCCAGCCTTTCTTCCCTGAACTGGGCCGTGATGTTTGGGATTCTGAGTCTTCCAGCAGTGATAGCAGTGGCATTAGCACTCCAGAGAGGCTGACAGGACCGAACTCTACCAACCAGTCTACAGACCAAAAGGAAAATTGCATCCTGAAGGATTCCTGCAGCTCTTCTGGTCATTTGTTTGAAGAGCATGCCATCTCCTTAAATGATAGTGATTCCTCTTACTGTCATATCAATCGCATCCTTAGAAATGCCCATTTCAGTAGCCTGCAATCTCGAGGACAGCCAGGGCCAACATGACCACCTCCGGCTCTGTTAACACCCAACACCCAGGGGCTAAAAGCTCAGTGCATTGGAAACCCCTCAGGAGGGGAATCTTTTGTCACTGTATGTCTTCAGCCCTGGAACCTCCAACATGAGGTTATGTCCTCACTAGCCATTCAGATTAATTCATTTGGTGTCCGCTAGCACTtttctattttcataaaatgtgtGAACGTTTGTTGTTTTCATGTTCATCATGATCTCTGCTTGGGTGCTACAGTACAAAAGGAAACCTCAAATGGCACTAAAGTGCATGTAATATTATGTAACCTTATCCCTTTTACTCAACCAGGCAAATATACTTGGTGCTACATGTTAAACAATACAGTAAAGAGGGGAATGCATTAAGCAGCCTTTGTAGGTGGTGCACCCAGAAATCAGTGAGCAAAGTGTGAAATGGAAGGATGGGGGAGGGGGAAATATGTAGGCAAATGATGTACCAAGGACCTCTGGGAGTGTGTAGTTAGTGTACCTAAGCACATGGGAGTATTCTTGCAGTCTTTCTGTACAACACAGGTTCTTAAACACTGGACCTGGAGTACATCCTGCTCTgtacatttagtgttttttgttttcctgctGAAACACACCCTCTTCAACTCAGGAAGGGCTTCTTAATTATCTGGTTATTTGCATCAGGTGGgctaaaaacagagaaaacactgaaaatacaAAGGGCAGGGAGGTATTACAGGATTATTGTTGGGAACCACTGATGTGAAAGATTGCAGAATAACTCCACAATATTATTTGCCTGCTCTAGTCTGTTCACAGAAGATctgaaaaagtattattaatatataattagcCATAGTTTAATTTCTTCAGAAAGCTTTTGGAGCTCaattatatcatatcatattaacATCTCAGGCATTGGAATTTCAGTCTTATGTGCCATGAAGCCAAGCTTGACGAGTTGTTAACTATAATACAGACCTGTGGGAAACAAGGTTTAGGTTTCCAGTCGCAAACTGTCAGTTGCAAAGTACAGACTACAGCACTGTATCTTAATATTAGGAAATGCAAGCTTGCACTACTCTATAAATGTAGTGGAGTTGGATTATTGCATCATGAACATCTTGAAATATATGTTCGACTCAGGTCTGCTGTGAAGTACTCTTTGTGTGGTGACTTTAGAAACTACCTTCAATACATATTTTGCACAGTGAAGGCTGagtaaagttttttattttattaaagtgcTCATTATTGAATTTTGACACAACACAACTTAAAGAGCCTAAATGAACTAAATGTACTTACAGTAGGTCATTGGGTTCCATGTAATAACATGATTCACAAATCTCCTAGGAACAGACGACGGAAATGCTTAGCCCTAAAATTAGCCTTCTTAACCTGGCACCCAGGGTCTCCAGTAACACCATCAGTCATGAGAAGCATGGGATGGTTTTAGTACCTATGGCTTTACTTGTGCAAGTATATGGGGTTTTAACTCACCTATACTTGGCTGTTGTGTGATGTGATATataaattttatgttttaccatgACATACAGTGACCAGGATTCTTCTTAAAATCATTTCATTTATGGGATATAATTTACAGATAACGCTCACAAATTCTGACCAGACCAGGCTTTAGCAAGATTACAGCGCAAGTAATATGTTTTTGGCCTGAGGCCACAATCTAGCATCCAGGTCAAATTATTAGTGTAAAGTTTTGTGCTTGTATATGAAGGGCACTGATCTGACCCTTTACTCGTCGTGCACTATTCTGAAACACTGTGGTTTTGTCCATGTGAACGACTATCAGCTTTTGATGATAATCATTACAATCACTTTCATGTTTTTATGTCGAATTGTACATAACACATAGCTAGCATATttacattttggatcattgttattttatgaAATTGTCCTAacaatattcaaaataaaagatttttttgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669017.1 True 2654 mRNA 0.42 4 6553333 6557903
XM_022669018.1 False 2514 mRNA 0.40 4 6553333 6558835

Neighbor

gene id symbol gene type direction distance location
LOC103025956 fscn2,LOC107684083,LOC107722237,LOC107581600 coding downstream 265700 6273871 ~ 6287633 (-)
birc5 birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 coding downstream 282390 6268401 ~ 6270943 (-)
tmem235 tmem235 coding downstream 286656 6256404 ~ 6266677 (-)
pgs1 pgs1,LOC107690911,LOC107755482,LOC107722233,LOC107601408 coding downstream 375232 6153694 ~ 6178101 (-)
afap1l2 afap1l2 coding downstream 514741 5980989 ~ 6038592 (-)
bicral gltscr1l coding upstream 8554 6567389 ~ 6578059 (-)
LOC103045903 LOC108426443 coding upstream 146233 6705068 ~ 6711220 (-)
LOC103031455 si:ch73-127m5.2,LOC108426537,LOC107749848,LOC107561855,LOC107684095,LOC108274350,LOC107601426 coding upstream 152479 6711314 ~ 6715739 (-)
LOC103032713 camk2g1,camk2g,LOC108410509,LOC108273829,LOC107561852,LOC107684098,LOC107690933 coding upstream 327874 6886709 ~ 6993101 (-)
sec24c sec24c coding upstream 443305 7002140 ~ 7020769 (-)
G34939 NA non-coding downstream 192955 6359911 ~ 6360378 (-)
G34829 trub1,LOC107755443,LOC107702428 non-coding downstream 400472 6149230 ~ 6152861 (-)
G34791 NA non-coding downstream 509894 6042925 ~ 6043439 (-)
G34769 NA non-coding downstream 540664 5927689 ~ 6012669 (-)
G34765 adrb1 non-coding downstream 661342 5887038 ~ 5891991 (-)
G34987 timm23a,timm23,LOC103030206,LOC108426535,LOC107690962,LOC107561858,LOC107684090 non-coding upstream 116744 6675579 ~ 6679954 (-)
G34988 NA non-coding upstream 121516 6680351 ~ 6680909 (-)
G34997 NA non-coding upstream 170026 6728861 ~ 6729154 (-)
G34998 NA non-coding upstream 172107 6730942 ~ 6731499 (-)
G35069 NA non-coding upstream 402338 6961173 ~ 6961993 (-)
ndufaf8 NA other downstream 6751 6543144 ~ 6546582 (-)
G34953 NA other downstream 11969 6537021 ~ 6541364 (-)
LOC103026268 bahcc1 other downstream 39632 6366684 ~ 6513701 (-)
ablim1 ablim1 other downstream 406022 6049001 ~ 6147311 (-)
G34770 NA other downstream 613933 5935835 ~ 5939400 (-)
G34981 qki2,LOC103029551,LOC108426533 other upstream 60845 6619680 ~ 6653585 (-)
LOC103030829 NA other upstream 129332 6688167 ~ 6696291 (-)
G35429 NA other upstream 2365993 8924828 ~ 8927717 (-)
tbata NA other upstream 2380098 8938933 ~ 9003896 (-)
G35512 NA other upstream 2645735 9204570 ~ 9205911 (-)

Expression


Co-expression Network