ankfn1 (ankfn1,LOC107684130,LOC107702427)


Basic Information

Item Value
gene id ankfn1
gene name ankfn1,LOC107684130,LOC107702427
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7353086 ~ 7466457 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669036.1
CTTAAGCTGTATAGTGAGTAGTGAGGGCTGTTATGTCTTTCCATTCTGGCTGAGCTGCTGTTCCTCCTGTTCATGAGGGTCTAAAACATCACGAGGATGCACTGTTTATCTTACTCCACGGGGTTAATTGCAGCCAAGCAATTTTCCTGAATAACTCCACAAATATTTCCTGTCTAAAATTATCTAGCCTCTGACATCCTCTTTGAAGTTGGGACGAGGAAAGTTTGAAAAGAAATCCACTCGtcccttttttcccctctttctaGCAGGAGCTCTGTTTTTGGTTTAAAACTGTTCTTTCTGAGAGTCGCTGGGAAAGAAAGTCAGGAGTGGGAGATGAGGGAGCAGTGAGATGATTGAACAGGAATGGAGGGATTTTATGTTCGGAACGAAGAATAATTGCCAGATGACAGAGGGTGCCGAGGTTGGGTCACTTCCTGATGCAGAACAGGGCTCGTACTTGAGATGGCTCAAGATGTCTTATGAGACAGAGAAGACATGTCTGCTGCTTCCACAGGAATCCCGAGCATCCTGTGTGTTTCACACAGCTGATGAGAAGGATGAAATACCAGGCATGGGGGAGGACAGTGTATTGGAGATGCTGAGCTACTCAAAGTTCATGGATCTGGAGACATGGCTCTGTATGCCCTCAACGCTGCTACCCAGGACCTTGGAGTCCACATGCTCAGCCTCACCTCTGTCCAGCAGTAGTGACTCTGCAGACACTGACACTGGGCTCCTCGAGAGGGACTCCTCTCCTCCCTTTTCAAACCATTCCCTGGAGAGGCAGAACCGTCTTTTGCCACCTTCCCCCATCctgcctgtgtctgtccccccTCCGTCCCCTGTGGCTTTGCGGACCACCTCCACACCGGTTCTCAACCCCAGCAGGGACTCCTGTCAGGGTGGTGTGAGTCACAGGAAGCGGCGACGCCTGGCTGCCAGCCCCGGAGGACTGCACTGGAATGCATCAGggtcaGTGCTGCGTGACTATGAGCGGGGAGAGGTGGCTTGTGTGTCGCAGGTGAAGCGCATCCCCAAACCTGTGGACTCTGAGAGACCCCGCACCGAACTGTGGGGGGACAAAGTGACCCTGAGGAAGACCGTGTCAGTGGACGATACACTCCTGCGGCAGACACCCAGAGAACACCACAGACTGCTCAGCCGGCTGGAGAGAGGAAAGAAGAAACTCAGGAACATCCATagccttGGAACGACTGGAAGATACGAAACCTGTAAAAAACCTGAGAGCAAGATCTCCCGACTGACTCAGAGACTCAACCAAAGGCATAGCGATGCTGCACTGATCAAGGACTTCAGACCACTTCTGTTCTTCAGCGGTTCTTCAGGGAGCTCCCTGAGCCTTGATAGGTCATTTTCTGTTAGCATGACCCAGCAGATGCAGAACCTCCAGCTGACCCACAGTAAGAAGGGGGCCGGTCCCGCCTCCCCCAGTGCAGCCAAACGGCTCTACCGCAACCTCTCTGAAAAGTTCAAGGGCAGCCATTCCTCCTTTGAGGATGCTTACTTCTTCGGTCGTTCGGATCGCATCCGCAAATCCTCGAACGTACAGAGCAGCGAGGCTCTGTTCGAGGCTGTGGAGCAGCAGGACCTGGACGCTGTTCAGATCCTGCTGTTTCAGTACACAGCGGATGAACTGGACCTAAACACGCCGAACAGTGAAGGCCTAACCCCGCTCGACATATCCATCATGACCAACAATGTCCCTATCGCTAAGATGCTGCTCAAAGCAGGGGCCAAGGAGAGCCCGCATTTTGTGAGTCAGGAGAGCCGAGAAGCCCATCTCTCGACGCTGGTGCAGGAGGCTCAGCGGAGAGCCAGTGAACTCTCCACCCAGGTGATGAGGGAGAGCCTTAGCCTGGAGACTTCTGACAAGGagaagcaactgaaggcctggGAGTGGAGGTGCAAGCTCTACAAGCGCATGCGCACAGGCTTTGAGCATTCACAGGTCCCGGAGGCTCCGACGGCTGTGCGCTTAACCGTGTCCAGCAGCACATCTCTCACCGTCACCTTTCAGGAGCCGGCTAGCATCAACTCAGCTGTAGTCACCAAATACAAAGTGGAGTGGAGCTGTCTGAAGGACTTCTCTTTATTGGCTGGAGAACTGATCCTTGAGAATCTAACGTCCCTGAGGTGCACTGTAACAGGTCTGAGTACAGGCAGGCAGTATTATGTTCGAGTTTCTGCGTACAACATGAAGGGCTGGGGTCCATCACAGCTCTCTCAGCCACCCTGCGCCGTTCCCTCCAacTGGAAGGAGTGTGATGGTAGAGAATCGCGGAAGAGAGGGCATATCGAGGCCATGGAGAGGTTGCTGCAGCAGGTCCGCGCCACTCACCAGCACTACAGCTGTGGAGACACCTCCAAGCTGCAGAACACCAGTCGCAAGCAGTCGGTCTCGAGAAGCCTGAAACACCTCTTTCATTCCTCCACCAAATTtgttaaaactcttaaaagAGGGATCTACATAGCTACAGTGTTTTATCATAAGGACAGTTTGCTGGTAACTAATGAGGATCAGATTCCCATCGTGGAGGTGGAGGACTCCTACAGCAGCTCCCTCATGCAGGACTTTCTGTGGTTTACCAAGCTGTCGTGTATGTGGGAGGACGTCCGGTGGCTTAGGCAGAGTATGACTATTTCCAACTCATCCTCCTCCACACTGCAGTCCAGGCAGAAGATGCTGTCTGCTGCCGGTCAGCTGCAGAACCTTCTGGGCACACACAACTTGGGCCGTGTCCACTACGAGCCCATTAAGGATCGCCATGGTAACGTGCTGCTGGTGACAGTAAGGGAGATGGAGAGCCTGTACTCGTTCTTTAACGGGAAGTGGATGCAGGTGTCCAAACTGCAGAGCCAGAGGAAGTCTCTGTCTACTCCGGAGGAGCCCTATGCCCTGGACATTCTGCTCATCACCATACAGGACATTCTAGCATATCAGCGGCGCAGTCAGAACCGGCTGTCTCCAGGCCTGTACCTAGGCTACCTAAAGCTCAGCAGCTCTGTGGACCAGATCAAGGTGTTGGTTCCTCAGCGAACGCCCAACATGCTCTGCCATGCCAGAATACGAGAAAACTGGAATGTTTCCAGGGATGAGTGGGAATGGCTTCAGACTCTGTCTGGCCCTGAGGAGGTGGAAAGAGTAGATCAGGCGGCAGACTGCCATGCCCCCCTGCTCTTCTCCGAGCTCCAGACAGCCATTAAGAGCCTGCTCCGCCAGATCAATCTACCTCTACACCAGGCCAAGCACTTCCGTCTCTACACACAGGAGGTGCTAGAGCTGGGTCACAATGTGTcctttcttctgctgctgcctgCCTCAGACGACGTGTGCACTGCCCCGGGCCAGGCCAATCCCTACACACCCCACTCGGGGTTCCTCAACCTCCCTCTTCAAATGTTTGAGCTCGTTCACTTCTGTGCGTATAAGGAGAAGTTTATCAGCCTGTACTGCCGCCTGTCCTCCGTGCTTGACCTGGATGCTCTGATAACCCAACAGGCTCTTAGAGAAGCCATTACAGACACTGAACTGGCGACTGCTAAACAGAGGCACCAGCATATACTggactttattcagCAAATGGATGAGATGTGGCGAGATATCCGATGGATCACTGATGCCCTTCAGTATGCCCGCTATAAGCACCCTCTGGGTGGGGTGCCCATCACATGGCTGGTGGATGCAAGCGCGGAGCCTGTAACCCAGAAGAACGACTCCACCTCCTCAAACACAGACTACCTACCAACCCCCTCCCCCTCTCCTGAGATGAGGAGAAGAAAGGATACAATTGACTCTCAGCCAGGCTCGGATGAGGAGGGATGCTCCGAGGTCTTCCTCCCCACCGACAGCGACTATGACTCCAGTGATGCGCTGAGTCCACGGGATCTAGACCTGGTCTACTCCTCAGCCCAAGACCTGTCCCATCAGGCTGTGCATGCCCTGAGCGGGAGCGCTCCAGACGTCCTGCAGATGCATGACCTCAAGTACAGCGCCTGCCCCACCGCCATCCTGGAAACTGAGTCCTGCACTAAAGACCTGGAGGACCTGTCCTTGTCCACTTACTCCAGCAAGTCCTCAGACAGCACGTCTCGCTGCAAGTTTCTGGCCGACCCGCcgaccaagaggaagatgctgTCCAAGAGCCACCCCCAGAGGAGCTACTTCGGCGGGCCACATCGCTGGCTGCGCGTCCAGAGCGAGAGCCAGACACCCTCGCTTTCTGAGGGAGTTTACACCAGACAGAGCGATTTGGACCTGCCACTCGAACTGCCTCGCTCTCTGCCACACTCCCCGTCTGCCTCGTATCGCCTGGATGAGCGGAAGAGCGCTCACCGGGAGAGCAAACCCAACGTGCGCAGaatttttgtggaatcgtgcaGTGAAACGTCCCCCAGCAGAGACAGCTCGCGCTGGccagaggagcaggaggaggtggATAGGAAGGCCTCTGTGGCAGAGACAGTATCTGTGTTCAGCATAGTTACAGAAGCTCAGGATGTGGACTCTGATGAGCAAACGAATGATCAAGTTTCTGAAATTCTCAGCAGCACactctaaaaaaggaaaaaaaaaatgtgtatttgttttttgttgtaatcTTGGTGTAAGCCGTCATACTGCCACCAGATTGCCTCTACAAATCTACACAATAACACCAAATTTTCAGGCATACCAACATACAAACTGTGTTGTAATATGTAGACagtggcccaatcccatttcttatTAGTACCTCTATACCTAGGTTTTATAGTGTCATTTTTCCCCTTGGAAATGAGTCACAGGGGGGAGTGGTTGAAATCCTTTcactaaaaatgctaaaaaaacttTAGAAACCTGATTCATCATCAATTTAAACCATCTATAAACCCTCTATAATACCCCTCCACCCCATCAAGAGTCAGGAAACTGTACCCCTCTACCCCATTAAGAGTCAGGACACCCTTCCCCTCTACTCCAACAAGTAGTAGGACCACTGTTGTGGTAGGGTCAaggagtgaaatgggattgggctttCTTTGTAGAATGtatagaggaaaaaaatatgaatttgaaGTTGCTGGTCAACTCCATAGGAATCCTATTCAGTGGCTCTGACTgttaaaatactgaatattatTAATGCAACATGAAAAGTGCTGCTTTTATCTTTGAACTTGAAACTGCCTCTGTACAGACTCATAGGTAAAAAGTGAAAAGTAGTACTTTTTGGCTGTTGGTCTCTGATCTTAGCATTTCAGCCGTTCTGAGGAGTACTGTATACCTGTGGTTTACCTTCTAGGACAAATCACTACCTAAGAAGAGCGGTGTTGCTCTTATCTCCCCTGTATGATTTATCAGtgtttaattgttattttacaCATTGAAAGAAGTAAATCATGTGTATTGACTGGTCCTGGTCTTTTCATAGCAGACCAGCCAAATACTGTACAAACAGTTTCAGTTTTTGTGTCAGAGAATGGgacttttcttttaattattaaaaaaatgatcataCGCTTGGAGTGCTAAACAATCACATCACTGTTACCAATGAAACATGCAATGCTGGTATCAGGACCTACTCGTTGAACTAATGAATATGTATGTCGTTTCATAGCAGATGCCTTGAGTCGTATACTGTTTACCTCTTTAGGATTGTGTTGTGTGCTTGTTTTATCTGAAGTCTCAATGGTGTGATCCATCAGTCCTGGTTTAGTCTGATGATGATGTCTAATGTGCTAGCATCATGCTACAACAAATGGAAACAAACCACTTgctatatattcatatatgctATATGAATAGACAGAAAAAAGTGCACACTAAAAAAGATTTTGCATCCTATGCATGATGAATGCAGGTTAAAAATTGAACTGATAGTTTTCTTGCTTTTTATACCTTTTTGCCCTTAGTAAAAATCGATGCCACCTGGTTCTATTTTGGTACTGCGGACTTGTACCACTTATTTAAAGGGTATGCACCACTTTATTTGAAGGATATTTGTGAATATTTGAATTACTGATTTTGCAAGTTACAGAGAAACAGTGATTCTTATTTTGACAACTGGTGTCAACAAAGCCATAGAGATTTGAAGTGTACagaaaaatgtacagaaaaataACGGAGCGCGCTGCACTGAAGGCGTGGCTGTATTCAATCAGCCATTCAGCCATCTCTTTCAAAGTATACACACTCCTCTCTGCTATCCCGCAGAGGTTGAATGGAATGACCGCATGTGTATGTAAGAGACTTGACGCTCACTGTTGAAGTCTTTGGAGTCCGACCTCTTGTCAGGTGAAAAGAGGAATGGAGGGCAGCTTACGTGAGAAACATTGTGAATTTGTCTGTTGCAATGTTATGACTTGTTGGTGTtgcagtgtattaaaaaaaatgtctttgcaCAGTTCTTCCTGAAAATATGTTTGTACTGGACTGATCTCCTTTTAAAGATGACAAGGGTGTTTCATCTCCAACTTTCTGTACAGTGACGTGTCAGCTAGAGCTCATGGTAAAATGGAGATAATGATAAAATGCACTACTTTAATATTCCTGTGTGTTTGAGCTCATTGCTCAGCTCTTCTACAGTAGTACGTGTTTTGCCTGTTTCCTCATGAGTGAGGCTTTTACAAGAGAATATTTCATTGCAAATACTATAGTCTGACCAGCTATAGTTGTTCCACATTATTGTTAAAGGTattattgttaaattaaaagtatttgTCATGATACCTTTATACTGTGCACACAGCAAGCCAAAACAATTGAAGAGCATCATATCTGTATATTTTTGCATTGAGCATTTATTGATCCAAATAATATATTTCGGTATCGTATTTTTGACAGTTATTGTCTCACGTCATCCCAGTTTCTATTGTTACATTAGCTTTTGCAATGCAATTGAATCTGGCCGATCTGTGGCAGATGTGTTtatgaactgaaataaacattCCAGTGTAGATATGTAA

Function

symbol description
ankfn1 Predicted to be involved in establishment of mitotic spindle orientation and regulation of establishment of bipolar cell polarity. Predicted to be active in spindle. Orthologous to human ANKFN1 (ankyrin repeat and fibronectin type III domain containing 1).

NR:

description
PREDICTED: ankyrin repeat and fibronectin type-III domain-containing protein 1-like

GO: NA

KEGG:

id description
K24478 ANKFN1; ankyrin repeat and fibronectin type-III domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669036.1 True 6972 mRNA 0.48 24 7353086 7466457

Neighbor

gene id symbol gene type direction distance location
LOC103040176 LOC108443565 coding upstream 18005 7306306 ~ 7335081 (+)
LOC103039861 stxbp4 coding upstream 60282 7275747 ~ 7292804 (+)
acsf2 acsf2 coding upstream 240895 7078789 ~ 7112191 (+)
LOC103036712 NA coding upstream 284558 7057908 ~ 7068528 (+)
slc16a5 NA coding upstream 296657 7043482 ~ 7056429 (+)
nog nog coding downstream 6450 7472907 ~ 7475245 (+)
LOC103035888 LOC107566522,LOC108435270,LOC107755508,LOC107684054,LOC108273414 coding downstream 117370 7583827 ~ 8281690 (+)
LOC103030301 csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC107755503,LOC103369437 coding downstream 881146 8347603 ~ 8360253 (+)
ccdc57 ccdc57 coding downstream 895042 8361499 ~ 8401643 (+)
LOC103030936 bambi,bambia,LOC107749375,LOC107676764,LOC107584374,LOC108274338,LOC107549411 coding downstream 1016414 8482871 ~ 8487451 (+)
G35148 NA non-coding upstream 30129 7321920 ~ 7322957 (+)
G35143 NA non-coding upstream 119223 7233635 ~ 7233863 (+)
LOC103039044 NA non-coding upstream 121765 7230253 ~ 7231321 (+)
G35102 NA non-coding upstream 193770 7125954 ~ 7159316 (+)
LOC111192361 NA non-coding upstream 233919 7115855 ~ 7119167 (+)
G35244 NA non-coding downstream 641703 8108160 ~ 8108470 (+)
G35299 NA non-coding downstream 940394 8406851 ~ 8407393 (+)
G35300 NA non-coding downstream 941023 8407480 ~ 8408610 (+)
LOC111192363 NA non-coding downstream 1007783 8474240 ~ 8491226 (+)
G35359 NA non-coding downstream 1085953 8552410 ~ 8552834 (+)
G35021 NA other upstream 449089 6902417 ~ 6903997 (+)
G34931 NA other upstream 621662 6730954 ~ 6731424 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other upstream 689479 6592607 ~ 6663607 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other upstream 811626 6502145 ~ 6541460 (+)
LOC103045604 LOC108426437,LOC107683136 other upstream 1095036 6246646 ~ 6258050 (+)
fasn fasn other downstream 919716 8386173 ~ 8438865 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other downstream 975675 8442132 ~ 8472989 (+)
LOC103024481 adamts14,LOC103367006 other downstream 1252897 8719354 ~ 8851392 (+)
G35744 mrpl38 other downstream 3004923 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 3281180 10747637 ~ 11001805 (+)

Expression


Co-expression Network