cdc42ep4


Basic Information

Item Value
gene id cdc42ep4
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 10385012 ~ 10424245 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669074.1
tgaggcagagtgagagagtgtgagtgtggagTTCGGTCACTGTGCGCGTGCTGTGTGTCAGAGCTGAGGAGAAAGGCTGGACACTGCGgaAGTCGAGTGATTGCAGTGCAGGAAACCAAACTGCAGGAGGAGTACAGACCTACACCACTGACTAGCACTTTTAACAGCACTAAAGAGAACCTGAAACAACATCACGGGATCTTCTGCAGAAATCATCATCGAGTCTCTTATTCAGAATTATGATGGCTCTGAGGCTCAGACCTGTGTTTCCTGACCACATTTCCTGAAAAACGAGTTCACTTAAAGGACTGACCCTCCTATTGGGCAGAGTGGGATAAAGGACCTCCGCCTTCACTGACAGTAAAGCGAAACCAGTGCACTAACTGGATCTACCATactttattttgtgttcatttgtttGAACTGTGAACACCATGCCAATTCTAAAGCAGCTCGTATCTGGCTCATCTCAGTCCAAGCGCCGCTCCCGGGCCGATCTGACTGCAGAGATGATCAGCGCTCCGCTCGGCGATTTTCGTCACACCATGCATGTCGGTCGTGGTGGCGACGCATTTGGAGATACCTCCTTTCTGAGCACCCGGTCCGGAGAGCCTCCTCGAGAACAGCAAACCCAGCCAAGCAGCTCCCCCAAGCAGGGTCTGCTGTCCCGCACCTTCAGGAGCAGCAAGCGCTCGCAGTCTGTCAACCGTCCGGACAAGAATGAAAGCAAGATTCCACCCTCCGGAGGTTCACCCGGGTATGTGAAGACCGCCATCTCCCTGCCGTACCTCAACAACGAGGAGACCACCAAAGGAGGACCGAACCTACCCAAGAGTGTCTCCTCCAGCCCAGTCAAGAACCTTCCAGAGGTTGACCATAAACCTGCTAACTTTGCAACCGGATTCGACCCTGAGCTTGACGAGCACAACTTCGGCGTGCTGACTGACCTGCCCGTGTCTGTGGCGCCCCCTTACAGTGGTGGTGGGATGAAGCATGCTGAGTCCATCCTTTCGTTCCACGTGGATCTAGGTCCCTCCATGCTTGGAGACATTCTCAGCGTCATGGACAAAAAGGGATTCAATGAGGACAGCTTTGGATTTGAGGAAGATCTCAGGGCACCTCCATCCCGTCCTTTCAAAGAACCAGAAGAAAAGAGAGCATCTTCTCCGTCGCAACCAGTCAACTTTCACGGCCAAAACGAGCAGCAGCATCTGGAGAGCTGCTCCATGTCCAGCTCAGGATCCGCAGACGAGATACCGAACAACCACAATACGAACAATGGCAAGAACAGAAGCTTGGACGACAGAGACTTCAGCTACATGGATGACGATGACGACGACGAAGAGATCAGGGTGTGAAACAGACTGGAAAGCGCTGGAACAGAATGAGAGGATGATTACGATTGGAATACGTCGTACATGAAAGTTGTAGAACATGAAAACCAGTGGAAACGGAATGAGACTTCTGAGGGAACTCTCGAGTGGACAGGTGTTTGGGGACTGTTAAAGGCGAATGACAAGAGGAGACTATAATTGACCTGGTTTTACCCCCTTAAAACTAATCTAGTCAATCAGCCGAGATGTGTTTGGTGTTTGAAGTTTGCTTCTTTAGCTACGAGAGGTGTTTGGTAATCTCTGTTGGACTTGATCATGTGGTTTTAGGTGTATATTGGCAGCATATTGGCACAAAAGTAGTAGAGTAAAGAAAAAGTAATTTTGCCCAGGCGAGGAAATGGCAGTATTGCAGGATTAGATGATCATGAtactttaagacattttaacgCTACTAATCACAAAAATACTTCTCTGTCCACTTTGGGTTGTGATGCCTTCTATGATATATTCCCAGTACTCACGTGACACTGTTGATGGAGAGATACTAAATGCACCTGCAAACTTTGCAAATGGAAtgttccatccatctggcacccattataaggcctcactcaaactcccataattcacgtCGCCTTGCCATGATcacgctggccagtgttcagccttacTCAAAATATAACACCTCAGCTCTTATGGGGTAACAGGTGTGGGGGTTCACAAGCCGTCCCTCTATTCTTCTACAGTCTGCTTCAGACATCACACTGTCGTCTGATTGGCTGCATTAGTGTTAAGGTTGTTAAACTGGGGGAATTttgattgtttgattgttttgCCAAACTTGCGCTTTAAGGAGAGGAACtaaagagaactaaagctacaATTTCAGCACCATAGCCCTTCTGAACCGGACCTATTACAGCAATACTAACTGTCCGCAGCTCTGTTGTACTGCCcacagtgagtgtgagtgtgagtgtgagtgcgtATGCTGGGATTAAGGGGGATTCTGAGATTTTGTTAGGGGAAAAAATCACCACATACATGTTCTGACGTTCTATAACCTCCACCAGGCCATGCACTGCAAGATGCAATATCTTATGAagtgaatattaaatatttaactaatTTTTAAGCAATTTTCTATTTAAAGCAGACCTGTCacaaacataaaacaattaACCAATCTTTTTGGATTAAATTTTGTGCCAGAAATAACTGCGATAAatgatatttttgtcattttagagcatattgtcaattttaacaatttttgcCACAATGCAACAAACTTTTCAAGTTCTTAGTCATGAATATGACAAATTACATAttgcacattaaatatatacattggACTTAGAATATAAATATGCTTAAATAGCATAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669074.1 True 2722 mRNA 0.46 3 10385012 10424245

Neighbor

gene id symbol gene type direction distance location
LOC103040920 sdk2,sdk2b coding upstream 11671 9829485 ~ 10373341 (+)
LOC103043335 npffr1 coding upstream 1117416 9220731 ~ 9267596 (+)
LOC103022911 LOC108413183 coding upstream 1177328 9177238 ~ 9207684 (+)
LOC103023541 LOC108441018,LOC107709014,LOC107595168 coding upstream 1355857 8994443 ~ 9029155 (+)
pald1 pald1 coding upstream 1681415 8599182 ~ 8703597 (+)
LOC103039374 NA coding downstream 13078 10437323 ~ 10441938 (+)
trim65 trim65 coding downstream 52145 10476390 ~ 10485798 (+)
foxi2 foxi2 coding downstream 616453 11040698 ~ 11042893 (+)
ptpre ptpre,LOC103359937,LOC107387775 coding downstream 760645 11184890 ~ 11217372 (+)
glrx3 glrx3,LOC107745700 coding downstream 1649118 12073363 ~ 12094731 (+)
G35677 NA non-coding upstream 301924 10081497 ~ 10083088 (+)
G35645 NA non-coding upstream 425145 9959325 ~ 9959867 (+)
G35621 NA non-coding upstream 550296 9833163 ~ 9834716 (+)
G35609 NA non-coding upstream 678710 9706049 ~ 9706302 (+)
G35554 NA non-coding upstream 930195 9454482 ~ 9454817 (+)
G35748 NA non-coding downstream 62870 10487115 ~ 10488053 (+)
G35794 NA non-coding downstream 309533 10733778 ~ 10734007 (+)
G35810 NA non-coding downstream 423642 10847887 ~ 10848371 (+)
G35825 NA non-coding downstream 654627 11078872 ~ 11079443 (+)
LOC103033033 NA non-coding downstream 666047 11090292 ~ 11264386 (+)
LOC103024481 adamts14,LOC103367006 other upstream 1533620 8719354 ~ 8851392 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 1912023 8442132 ~ 8472989 (+)
fasn fasn other upstream 1946147 8386173 ~ 8438865 (+)
G35021 NA other upstream 3481015 6902417 ~ 6903997 (+)
G34931 NA other upstream 3653588 6730954 ~ 6731424 (+)
G35744 mrpl38 other downstream 47135 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 323392 10747637 ~ 11001805 (+)
G35903 NA other downstream 1377213 11801458 ~ 11802204 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 1687445 12111690 ~ 12566941 (+)
G35967 NA other downstream 1942295 12366540 ~ 12370962 (+)

Expression


Co-expression Network