ptpre (ptpre,LOC103359937,LOC107387775)


Basic Information

Item Value
gene id ptpre
gene name ptpre,LOC103359937,LOC107387775
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 11184890 ~ 11217372 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669082.1
tctcacacacacacactctctctgtctcagacacacacactctctcacacactcagatAAAGTGCAGCAGAGGCGGGCGCAGCGTCAGAGCCGCGTGGTTCTCCTGGGTTGAGGGTGGTGCGGTGTTTTGAGTGTTGAGCTCTGATGAGAAAGAACAGCCTTAGCTTTCGATGGTTCAAAAACCAGAGAAAAGCCGACATCACCACAGTAGACAAGAAGATACCAAATGGCATCCTGGAGGAACAAGAACAGACGGTGGTCCTGCTGCCTAGATCCCCCTCCACATCCAAAACATACCTCCCCATTCCTGTAGACAACCTGGAGGATGAGTACCGGATCCGATCAGCTGATGATGGGAAGCTCTTCAGAGAACAGTATAATTCGTTAACCGGAGGAAACCCTCAGGGAACGTACGAGGAGGCGaacagagaagaaaacagagacaAGAACAGATATCCCAATATCCTCCCATatgatcattccagagtGCTGCTGACACAGATAGACGGCGTTCCTCATTCAGATTACGTAAACGCTTCATACATAGACGGCtataaagacaaaaacaagttcatcGCAGCACAAGGACCAAAGCAGGAGACGGTATCTGATTTCTGGAGGATGATCTGGGAGCAGAAATCTGCCACTATTGTGATGCTCACCAACCTGAAGGAGAGGAAAGAGgaTAAGTGTTATCAGTACTGGCCGGATCAGGGCTGCTGGACGTATGGTAATGTGCGGGTGGCGGTGGAGGATTTCACTGTGCTGGTGGATTACACCATTCGCAAGTTCTGTATTCAGTATCAGGCCAGTGACGGCTCTAAAACCCCTCGGCTGGTGACTCAGCTCCACTTCACCAGCTGGCCGGACTTCGGCGTGCCCTTCTCCCCCATCGGCATGCTCAAGTTCCTCAAGAAGGTCAAACAGGTGAACCCGTCGTACGCTGGACCCATCGTGGTGCACTGCAGCGCCGGGGTCGGGAGGACAGGTACATTTATAGTAATCGATGGGATGATTGATATGATGCACGAGGAGCAGAAGGTGGACGTGTTTGGATTCGTGTCGAAAATCCGAGACCAGCGATCACAGCTCATACAGACAGACatgcAGTACTCGTTTATCTACCAGGCTCTGCTGGAGTACTTCCTCTATGGGGACACTGAACTGGACGTGTCCTCTTTGGAGGGACACCTGCACAAACTGCACAACACCTGTGCTCCACAGGACCGCCTCGGACTGGAGGAGGAGTTTAAGAAACTGACAAACATGCGGATTATGAAGGAAAACATGAGGACAGGCAACCTGCCGGCGAACATGAAGAAGAACCGAGTGCTCCAGATCATTCCATACGACTTTAACAGAGTGATCCTGTCGATGAGGAGGGGTCAGGAATTCACAGACTACATTAATGCATCTTTCATTGATGGCTACAGGCAGAAGGACTATTTTATAGCCACTCAGGGTCCTCTGTCCCACACTGTGGAGGATTTCTGGAGGATGGTGTGGGAGTGGAAGTGCCACTCGATAGTGATGCTGACAGAACTGCAGGAGAGGGAACAGgaTAAATGTTTTCAGTACTGGCCGACAGAAGACTCGGTGAAGTACGGAGATTATTCAGTAGAGATTAAAGCAGATACTCAGTGTGACGAGACCTTCAGCCTCAGAGATCTGGTACTCACGCACCAACCTgaaaaGGAAACGCGTTTGGTCCGGCACTTTCACTTCCACGGCTGGCCAGAGATCGGCATTCCAGCAGAGGGGAAGGGAATGATCGACATCATCGCCGCCgtgcagaaacagcagcagcaatctGGCAACCACCCCATCGTAGTGCActgcagcgcGGGGGCGGGGCGGACCGGTACGTTTATAGCTCTCAGTAATATTCTGGAGCGAGTGAAAGCTGAGGGGCTGCTGGACGTGTTTCAGACGGTGAAGAGTTTGCGGATGCAGCGGCCGCACATGGTGCAGACTGTGgaacAGTATGATTTCTGCTACAGAGTGGTACAAGACTTTGTTGATATTTTCTCAGACTATGCCAATTTTAAATGATGAATTTGCCTTAACGTTTCTGTTCAGTGCTTTTTTATAAACCAGTTGATCAGGATTGTTTCCTTTAACTGGATAAATTAGCTTCTATTTTGCTATGCACTCGACCTGTTAGAGATCATATCTATCTGTAATATAAAGTCGTACAGTAAACTAAAGCTACAGAATgggtttaaaaactgtaatatgaTGAAAGAAGGCCATATTTACATGAACTCTTTCAGTTATGGTCTTAAATCGTGTCTTAAGTCTCATCACATCATTCCAGATTTCAGATTGTTTGATTCTTTGTTTGGCCTTGTTgttttttaacctgtttttttttttttatctggttcTTACCAATGTAACAGGTGGTTTTTTTAACCCGTGTAAAGTTTGTAAAGCTGTAggtattgtaaatgtatttatgtaatgtTGCTGACAGTCCATT

Function

symbol description
ptpre Predicted to enable identical protein binding activity and protein tyrosine phosphatase activity. Predicted to be involved in negative regulation of insulin receptor signaling pathway; protein dephosphorylation; and regulation of mast cell activation. Predicted to act upstream of or within transmembrane receptor protein tyrosine phosphatase signaling pathway. Located in cytoplasm; nucleus; and plasma membrane.

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase epsilon isoform X3

GO: NA

KEGG:

id description
K18033 PTPRE; receptor-type tyrosine-protein phosphatase epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669082.1 True 2482 mRNA 0.48 18 11184890 11217372

Neighbor

gene id symbol gene type direction distance location
foxi2 foxi2 coding upstream 141997 11040698 ~ 11042893 (+)
trim65 trim65 coding upstream 699092 10476390 ~ 10485798 (+)
LOC103039374 NA coding upstream 742952 10437323 ~ 10441938 (+)
cdc42ep4 NA coding upstream 760645 10385012 ~ 10424245 (+)
LOC103040920 sdk2,sdk2b coding upstream 811549 9829485 ~ 10373341 (+)
glrx3 glrx3,LOC107745700 coding downstream 855991 12073363 ~ 12094731 (+)
jakmip3 jakmip3 coding downstream 1386585 12603957 ~ 12664928 (+)
dpysl4 dpysl4,LOC107653119,LOC107706606,LOC107582189,LOC107654562,LOC107568139 coding downstream 1454173 12671545 ~ 12692068 (+)
LOC103039392 chmp6b,chmp6,LOC108429718,LOC107749864,LOC107684156,LOC107755461,LOC107690936 coding downstream 1486966 12704338 ~ 12710368 (+)
LOC103024023 LOC108273716,LOC108429130,LOC107690938 coding downstream 1500281 12717653 ~ 12831319 (+)
G35833 NA non-coding upstream 25078 11153899 ~ 11159812 (+)
G35825 NA non-coding upstream 105447 11078872 ~ 11079443 (+)
G35810 NA non-coding upstream 336519 10847887 ~ 10848371 (+)
G35794 NA non-coding upstream 450883 10733778 ~ 10734007 (+)
G35748 NA non-coding upstream 696837 10487115 ~ 10488053 (+)
LOC111192404 NA non-coding downstream 223040 11440412 ~ 11442668 (+)
G35908 NA non-coding downstream 604520 11821892 ~ 11822308 (+)
G35912 NA non-coding downstream 632160 11849532 ~ 11849748 (+)
G35913 NA non-coding downstream 633752 11851124 ~ 11851340 (+)
G35931 NA non-coding downstream 852823 12070195 ~ 12072400 (+)
dock1 dock1,LOC107740868 other upstream 183085 10747637 ~ 11001805 (+)
G35744 mrpl38 other upstream 709107 10471380 ~ 10475783 (+)
LOC103024481 adamts14,LOC103367006 other upstream 2333498 8719354 ~ 8851392 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 2711901 8442132 ~ 8472989 (+)
fasn fasn other upstream 2746025 8386173 ~ 8438865 (+)
G35903 NA other downstream 584086 11801458 ~ 11802204 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 894318 12111690 ~ 12566941 (+)
G35967 NA other downstream 1149168 12366540 ~ 12370962 (+)
G35995 NA other downstream 1484933 12702305 ~ 12703056 (+)
LOC103039668 LOC108435045 other downstream 2284874 13502246 ~ 13520702 (+)

Expression


Co-expression Network