tcerg1l (tcerg1l)


Basic Information

Item Value
gene id tcerg1l
gene name tcerg1l
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12243281 ~ 12417270 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669105.1
GCTGCCCCCCACCGGAGCGACTCGGTGACGGGGGGACTTTTAGAGCCGGGGCTCGCGCGGAGCCCCCTGCGCTCTCACGCTCTTTCGCTCTCACGCACGCACGCGCGCGCGCACATACATACAGATACTACATTGACTCGGAGAGAGGAGAGACGGACCCTCCGTGCGCACGCACACTGGATATTGGCGTCTTTTGCACCAAAAGCTCGCgcgctctctcgctcgctcgcgTTTTCTTCTCCATCCAGCCTCGAGCGCACGCGGACAGcgagtgatggagtgatggatTGAGGGGCTGACACACACAAGGATTTATGCGCGGATTCTGCACGCGGGTTTTCTCCTCTTAGTGTCCTCCCTCACCCCGCTCCGGACAGCGCCCCCTGGTGGAGGATGTAGTGATGATCCCCGTGCAGCGCGTGCAGGCTCAGGCCCAGGTGTGGCCAGGTGAGCCCCCGCCGCTGCTGTGGATGCTCCCGGGCCTCTGTCCTCTTGCCGCTGCCCCGCCCCCTCCACTGATGGTGGCGTCGCGCTCGCCGCCGCTGTTACGCGCCGTGTCACGCTGGCAGCTCTCCGCCGCCTCCTGCGAGCCCTTCCTGCCGCTGGTGCGCGCCACCGAGCCGGTGCTCACTCCGTTCCCGCTGGCCGGCGTTCAGTGGGAGCTTCCCTCCAGGCCTCCGATGCTGGGGTTTCAGCCCTCTGCGGGGGTGGATCTGGTCCCGGTGTTCCCCCCGGTGTACCGCACCCTGCTGCCCCCCCACTACGGCAAAGCCTGGCTGGAGAAGCGCGTGCCGGACTACAAGGTTTATCTTAATAACACTCTGGCTCTGGAGACCACCTGGATCAGCCCGGAGGAAGTGGGACTTTTCCAGCGGCAAGAAAAGCCAATGATGATGACGAATCAAGTGGCAATGAGCATATCCAGGCCAGCCGCCGCCTCCAGGAATTTCCACACTCTTCTCCTGACGCCCAGGCGTGTTTCAGGTTGTCCCGTGGCTATAAAACGAGTGCGGAGCAACAAGCGCATGGCCTTGGCTGCAGCAGCTCTCATGGCCATGGAGTCGGACGTGACGCAAGGACCCTCAGCATCTTCAGCTCATCCTCTTCACCTACTGTCTCTCTCACCCATCAAAATCCCCATCCTCACTCCTCGCAACCGAGggTCTCGAAGGGCCTGGGCGAGATTGTTGAGTCCAGTCCTTCCAGCTCAGATCACCACCGTAGCGTCGCTGTCGGCCCCCAGCGTGACCCTCGTGACCAGAGACTGGAAAGATCAGGCGGCTCCAGAGAAGAAACTGGAGGTGAAGACGCCATCCTGTGCAGGAGCTCTGGTGCTTCGCTCTGAATCCACCCCGGAGGACAAAGTGGagGATGAGCAGTTTAAGGTCAGCATGGAAATTGACAGCTCGCCCAAAGACAACCGACCTGTTGCATCGACGCCTGTACCAGGATCGCCATGGTGTGTAGTTTGGACAGGAGACGACAGAGTGTTCTTCTTCAACCCCACCATGCAGCTGTCTGTGTGGGATAAACCAGTGGATTTAAAAGATCGGGGAGACATCAATAAAATCATTGAAGATCCTCCACATAAACGCAAGAAAGACTCTCTGGatGATGGCTCAAATTCTGCATCATCAGATGATGAGGACGATGATGATGAGGAAGATCATATATCCAAATCCAAACGTAACAAATTGGAGGAACCAATGGATTGTGTTCCAGCAAGCGATGAAAACAACACAGAACGATGCAAAACATCTAATCAGATGGTTCTACCTCTCGAACTGCGGATCACACACTTCAGAGATATGCTGCTGGAGAGAGGGGTTTCCGCTTTCTCTACGTGGGAGAAGGAATTACACAAAATCGTATTTGATCCTCGGTACCTCCTGCTGGGTCCGGAGGAGCGTAAACAGATTTTCGATCAGTTCGTCAAAGCCAGGATAAAAGAAGAGTACAAGGAGAGGAAGAGCAAACTGCAGCAGGGAAAGGAAGAGTTCCGGAAGCTGCTGGAAGAGTCAAAAATCACGTCCAAGTCAACTTTCAAAGAGTTCTCGGAGAAGTACAGCCGAGACCCTCGCTTCAAACAGGTCCCAAAACCCAAAGACCAGGAGCTCCTGTTCTCGCAGTTCGTCAGCGGCCTGAAGAAGCGCGATAAAGAAAATCGAATGAGGCTGAGGAAGATGAGATGAAGGCTCGCCAGCCTGTGAATAAACTGCTCtactgatttattttacttatttttttctgcagagtACTGTGACAGGATCACCGAACAGTATGTCCTCTACTCAAACTGCACAATGACACAATCTGTCTAAAGCATCTGACTGAGCAAAAAACGCTggcaacaaaaatatatatataaaaaaatacactccgCACGCCATCGGCGGTCCACGATTCACTCCGAATACAATCCTGATTTTTGGAAGgttgttaatgttaataataataataataataataataataataataataataatgaagaatCAGAGTCAGTCTGGTTCGACTCTAGAGATGGTTCAACTCTGGAGACTCAACCTGTTTCATATTGAAGCTCCTACAATTCAGTGTTGCAAGAtgtcacaataaataaaaagagaaataaaatgttaatatgagTTAATATAAGTTATTATGAGTTATTATGAGTTATTATGAGTTATTATGAGTTATTATGACGTAATCTGTACTGTACTTAAGCCATCTGACCTGAGCACACAGGTGTGAACTGATTTTTAAAGGTGATTGTGTAAATAGATGTGGATAACCCAGCGCTGTAATTAAGATGATTTTGTGGGCGTGTCCGGTCCGTGTGTGGGCGTTTCTGGAGATGTTCGGTTCTCCACAGCATCTGTGAGGATCAAcaagctgttgtgttttttttttctcggtgggtttttaaaatgttgtccaaaaaaaaaaaaaaaaaaaaa

Function

symbol description
tcerg1l Predicted to enable RNA polymerase binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus.

NR:

description
PREDICTED: transcription elongation regulator 1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669105.1 True 2942 mRNA 0.51 14 12243281 12417270

Neighbor

gene id symbol gene type direction distance location
ebf3 ebf3,ebf3a,LOC107582179,LOC107745698 coding downstream 204699 11897053 ~ 12038582 (-)
fam196a fam196a coding downstream 1362447 10827410 ~ 10880834 (-)
wbp2 wbp2,LOC107667802,LOC107578800 coding downstream 1749095 10487067 ~ 10494186 (-)
mrpl38 mrpl38 coding downstream 1767404 10467821 ~ 10475877 (-)
LOC103039991 LOC103039991 coding downstream 1792996 10443259 ~ 10450285 (-)
ppp2r2d ppp2r2d,LOC107553689,LOC105009682 coding upstream 158241 12575511 ~ 12603380 (-)
trnaq-cug_2 NA coding upstream 250566 12667836 ~ 12667907 (-)
trnaq-uug NA coding upstream 251446 12668716 ~ 12668787 (-)
LOC103039695 LOC108429709 coding upstream 281318 12698588 ~ 12702831 (-)
LOC103038875 NA coding upstream 419898 12837168 ~ 12914367 (-)
G35946 NA non-coding downstream 175894 12050053 ~ 12067387 (-)
G35944 NA non-coding downstream 218705 12020754 ~ 12024576 (-)
G35941 NA non-coding downstream 248061 11975089 ~ 11995220 (-)
G35914 NA non-coding downstream 391915 11851126 ~ 11851366 (-)
G35901 NA non-coding downstream 506749 11736322 ~ 11736532 (-)
G36043 NA non-coding upstream 42502 12459772 ~ 12461854 (-)
G36045 NA non-coding upstream 156585 12573855 ~ 12574842 (-)
G36047 NA non-coding upstream 157659 12574929 ~ 12575451 (-)
G36061 NA non-coding upstream 187725 12604995 ~ 12605356 (-)
G36082 NA non-coding upstream 268756 12686026 ~ 12686397 (-)
LOC103036331 NA other downstream 170854 12067533 ~ 12072427 (-)
clrn3 NA other downstream 1160099 11053659 ~ 11083182 (-)
rpl38 NA other downstream 2812053 9426075 ~ 9431228 (-)
G35512 NA other downstream 3037370 9204570 ~ 9205911 (-)
tbata NA other downstream 3239385 8938933 ~ 9003896 (-)
G36074 NA other upstream 292538 12709808 ~ 12711545 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 889818 13307088 ~ 13311525 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 1057896 13475166 ~ 13500177 (-)
c4h10orf88 LOC103041415 other upstream 2368682 14785952 ~ 14797212 (-)
G36677 NA other upstream 3330130 15747400 ~ 15774593 (-)

Expression


Co-expression Network