ppp2r2d (ppp2r2d,LOC107553689,LOC105009682)


Basic Information

Item Value
gene id ppp2r2d
gene name ppp2r2d,LOC107553689,LOC105009682
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12575511 ~ 12603380 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669107.1
TGTCGACTGGCCGCGTGCGCCATCTTGAGAGGAATAAGAAATCTCGGGCGATGCGCGCGGCGCGCTGATCGGACCCGACCGGACCGGAGCGGAGCTTCTCCACGGTTTGGGCCTGCGCTGCGATTCCCCGTTACGGGCAGCGGAAGACCGGCGGGAACTCGCGgccggagaaagagagagagagccgggGGCCGGGGacagatctgctgctgctgctgcggagCGACGCGATGGCAGGGGTCGGAGGAGGGAACGATTTCCAGTGGTGTTTCTCGCAGGTGAAGGGGGCCATAGACGAGGATGTGGCGGAAGcGGACATTATCTCAACAGTTGAATTTAACTACTCTGGGGAATTACTAGCTACAGGAGACAAGGGTGGAAGAGTCGTCATATTTCAGAGAGAACAAGAGAGTAAAAATCGTCCGCTCTCGAGAGGAGAATATAACGTATACAGCACTTTCCAGAGTCATGAACCAGAATTTGACTATTTGAAAAGTTTagaaattgaggagaaaattaataaaatccGATGGCTGCCCCAACAGAACGCTGCTCACTTCCTGCTCTCCACAAACgataaaaccATCAAGCTGTGGAAGATCAGCGAAAGGGACAAACGAGCGGAGGGCTACAATCTGAAAGATGAAGACGGGCGTCTGAGAGATCCGTTTAGAATCTCAACACTAAGGGTGCCTGTGCTGATGCCGATGGACCTGATGGTTGAAGCCAGCCCTCGCAGAATATTTGCGAATGCGCACACATATCACATCAACTCCATTTCAGTAAATAGTGATCATGAAACATACCTTTCTGCAGATGACCTAAGAATAAACCTATGGCACTTAGAAATCACAGATAGAAGTTTTAACATTGTAGATATAAAGCCTGCCAACATGGAGGAGCTGACGGAGGTGATCACGGCTGCAGAGTGCCACCCTCACCAGTGCAACGTGTTCGTGTACAGCAGCAGCAAGGGCACCATCCGCCTCTGCGACATGCGGGCAGCGGCCCTCTGCGATAGACATAGCAAATTTTTTGAAGAGCCTGAAGATCCGAGCAGCAGGTCGTTCTTCTCAGAAATCATCTCCTCCATATCTGATGTCAAGTTCAGCCACAGCGGCCGATACATGATGACCCGAGACTACCTTTCAGTGAAGGTGTGGGACCTCAACATGGAGAACCGGCCTGTAGAGACCTACCAGGTACATGAATACCTACGTAGTAAGCTGTGCTCGCTGTATGAGAACGACTGCATTTTTGACAAGTTCGAGTGCTGCTGGAACGGATCAGACAGTGCCATTATGACCGGCTCCTACAACAACTTCTTCAGAATGTTTGACCGGAACACCCGCCGGGACATCACTCTGGAGGCGTCCCGGGAGAACAGCAAACCGCGGGCCACGCTGAAACCCCGTAAAGTCTGCACCGGcgggaagaggaagaaggacgAGATCAGCGTGGACAGCCTGGACTTCAACAAGAAGATCCTCCACACCGCCTGGCACCCCAAAGAGAACGTCATAGCGGTGGCCGCCACCAACAACCTGTATATATTCCAGGACAAAATGAACTAAAGAGAGAACAGCAGCGGAGAAAAATCCAAACCAAGAAAAATCTCCACCTTATTCCCCTCCGGCACAAGAGGACAAGAGAGGACTCGCGAAAACCACAGAAAACCACAGAaaagaagaataataataatgatctcGTACTTTCCATAGCCTAGTCCTTAACGTTAAAGTCGAAGAGAAGCCGCAGCCTTGTTTCATGTTGTTCTCCTAATGGAATAATGGAtgcacttgttttttctttttcagtttttttgtttcatttttcatttgtattttattttatttttttgtttagtttgtttagcCTTTCACACACAGTCCAGGGGAAATGAGGAGGAGTAAATGGGCGTGTCTCTTTTGCTAACGCCTCGTCACGCGAGAGGCACGGTCAAAAGccattttaaacataatatatata
>XM_022669108.1
CTGCAGATCCTGCTAGGGGGGTCTCCACGCCTCTCGCTCACGTGGTGGGGGGTCCACTCCTACCTGTCCAACATGGCCGAGCGTCTCTCCTCTCGCGCTCTGGCCTCTGCAGGCGAgactgtggtgctgctgctgctgctgctgtttcggCTTCTCCCGGGCACTTAAATCTCCCCCTGCTGCTGACAGCCACGGGCTTTAAAGCCGGCTATAATGGCCTCGTGCTGCGCTTCAGGATGGcGGACATTATCTCAACAGTTGAATTTAACTACTCTGGGGAATTACTAGCTACAGGAGACAAGGGTGGAAGAGTCGTCATATTTCAGAGAGAACAAGAGAGTAAAAATCGTCCGCTCTCGAGAGGAGAATATAACGTATACAGCACTTTCCAGAGTCATGAACCAGAATTTGACTATTTGAAAAGTTTagaaattgaggagaaaattaataaaatccGATGGCTGCCCCAACAGAACGCTGCTCACTTCCTGCTCTCCACAAACgataaaaccATCAAGCTGTGGAAGATCAGCGAAAGGGACAAACGAGCGGAGGGCTACAATCTGAAAGATGAAGACGGGCGTCTGAGAGATCCGTTTAGAATCTCAACACTAAGGGTGCCTGTGCTGATGCCGATGGACCTGATGGTTGAAGCCAGCCCTCGCAGAATATTTGCGAATGCGCACACATATCACATCAACTCCATTTCAGTAAATAGTGATCATGAAACATACCTTTCTGCAGATGACCTAAGAATAAACCTATGGCACTTAGAAATCACAGATAGAAGTTTTAACATTGTAGATATAAAGCCTGCCAACATGGAGGAGCTGACGGAGGTGATCACGGCTGCAGAGTGCCACCCTCACCAGTGCAACGTGTTCGTGTACAGCAGCAGCAAGGGCACCATCCGCCTCTGCGACATGCGGGCAGCGGCCCTCTGCGATAGACATAGCAAATTTTTTGAAGAGCCTGAAGATCCGAGCAGCAGGTCGTTCTTCTCAGAAATCATCTCCTCCATATCTGATGTCAAGTTCAGCCACAGCGGCCGATACATGATGACCCGAGACTACCTTTCAGTGAAGGTGTGGGACCTCAACATGGAGAACCGGCCTGTAGAGACCTACCAGGTACATGAATACCTACGTAGTAAGCTGTGCTCGCTGTATGAGAACGACTGCATTTTTGACAAGTTCGAGTGCTGCTGGAACGGATCAGACAGTGCCATTATGACCGGCTCCTACAACAACTTCTTCAGAATGTTTGACCGGAACACCCGCCGGGACATCACTCTGGAGGCGTCCCGGGAGAACAGCAAACCGCGGGCCACGCTGAAACCCCGTAAAGTCTGCACCGGcgggaagaggaagaaggacgAGATCAGCGTGGACAGCCTGGACTTCAACAAGAAGATCCTCCACACCGCCTGGCACCCCAAAGAGAACGTCATAGCGGTGGCCGCCACCAACAACCTGTATATATTCCAGGACAAAATGAACTAA

Function

symbol description
ppp2r2d Predicted to enable protein phosphatase regulator activity. Acts upstream of or within with a positive effect on myoblast fusion. Predicted to be located in cytoplasm. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol. Orthologous to human PPP2R2D (protein phosphatase 2 regulatory subunit Bdelta).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component

KEGG:

id description
K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669107.1 True 1989 mRNA 0.49 10 12575511 12603380
XM_022669108.1 False 1502 mRNA 0.51 9 12575926 12595766

Neighbor

gene id symbol gene type direction distance location
tcerg1l tcerg1l coding downstream 158241 12243281 ~ 12417270 (-)
ebf3 ebf3,ebf3a,LOC107582179,LOC107745698 coding downstream 536929 11897053 ~ 12038582 (-)
fam196a fam196a coding downstream 1694677 10827410 ~ 10880834 (-)
wbp2 wbp2,LOC107667802,LOC107578800 coding downstream 2081325 10487067 ~ 10494186 (-)
mrpl38 mrpl38 coding downstream 2099634 10467821 ~ 10475877 (-)
trnaq-cug_2 NA coding upstream 64456 12667836 ~ 12667907 (-)
trnaq-uug NA coding upstream 65336 12668716 ~ 12668787 (-)
LOC103039695 LOC108429709 coding upstream 95208 12698588 ~ 12702831 (-)
LOC103038875 NA coding upstream 233788 12837168 ~ 12914367 (-)
LOC103038558 NA coding upstream 322853 12926233 ~ 12928968 (-)
G36047 NA non-coding downstream 60 12574929 ~ 12575451 (-)
G36045 NA non-coding downstream 669 12573855 ~ 12574842 (-)
G36043 NA non-coding downstream 113657 12459772 ~ 12461854 (-)
G35946 NA non-coding downstream 508124 12050053 ~ 12067387 (-)
G35944 NA non-coding downstream 550935 12020754 ~ 12024576 (-)
G36061 NA non-coding upstream 1615 12604995 ~ 12605356 (-)
G36082 NA non-coding upstream 82646 12686026 ~ 12686397 (-)
G36080 NA non-coding upstream 91446 12694826 ~ 12695659 (-)
G36075 NA non-coding upstream 100972 12704352 ~ 12706177 (-)
G36100 NA non-coding upstream 227962 12831342 ~ 12832622 (-)
LOC103036331 NA other downstream 503084 12067533 ~ 12072427 (-)
clrn3 NA other downstream 1492329 11053659 ~ 11083182 (-)
rpl38 NA other downstream 3144283 9426075 ~ 9431228 (-)
G35512 NA other downstream 3369600 9204570 ~ 9205911 (-)
tbata NA other downstream 3571615 8938933 ~ 9003896 (-)
G36074 NA other upstream 106428 12709808 ~ 12711545 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 703708 13307088 ~ 13311525 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 871786 13475166 ~ 13500177 (-)
c4h10orf88 LOC103041415 other upstream 2182572 14785952 ~ 14797212 (-)
G36677 NA other upstream 3144020 15747400 ~ 15774593 (-)

Expression


Co-expression Network