dpysl4 (dpysl4,LOC107653119,LOC107706606,LOC107582189,LOC107654562,LOC107568139)


Basic Information

Item Value
gene id dpysl4
gene name dpysl4,LOC107653119,LOC107706606,LOC107582189,LOC107654562,LOC107568139
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12671545 ~ 12692068 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669121.1
TTTCCTCCAACgtgacatacacacactcccatCCATCAGCCGGTGGCTTTTTGTTTTTGCCGCCCCGCAATTAAAACCCCCATAAAACCGGCAGAATGTCCTTCCAGGGAAAGAAGAGCATCCCCCGTTTAACGGGTGATAAACTCATCATCAAAGGCGGGAAGATCGTGAACGATGACCAGTCCTTCTATGCTGACATTTTTATTGAGGATGGGACCATCAAACAGATTGGTGAGAACCTCATTGTGCCCAGTGGGGTGAAGACAGTGGATGCGTACGGGCACATAGTCATCCCTGGCGGCATTGACGTCAACACCAGCCTGCAGGCTCAGCACATGGGCATGAGCCCAGCTGATGACTTTTATCATGGAACCCGCGCTGCGCTGGCAGGAGGAACCACCATGATCATTGACCACGTTGTACCAGAGCCGGGCGCTAGTTTGCTGGCTGCTTTTGACCAGTGGAGGGATGTGGCAGATAAGAGGTCTTGCTGTGATTACTCTCTGCACATAGACATCACCCGCTGGCACGAGGGCATGTTCGAGGAGCTAGAGACGCTGGTCAAAGATCAAGgCGTTAATTCATTCCTGGTTTTCATGTCCTACAAGGACAGGTTTCAGAGCTCAGACTCACAAATGTATGAGATTTTTGGTATTCTGAGAGATCTGGGAGCTATTGCGCAAGTTCATGCTGAGAACGGCGATATTATtgatgagGAGCAGAAAAGGCTGTTAGACATGGGCATCACCGGCCCTGAGGGGCATGTGCTGAGCCACCCGGAGGAGGTGGAGACAGAAGCTGTGTATCGAGCCATCACCATCGCCAAGCAGGCCAACTGCCCGCTCTACATCACCAAAGTGATGAGTAGACCTGCTGCTGATGTCATCGCCAAGGCCAGGAAAAAGGGAATGGTCATTTATGGAGAGCCAATCGCAGCCAGTCTCGGCACTGATGGGTCACATTACTGGAGCCAAAACTGGGCTAAAGCCGCCGCCTTTGTTATGTCTCCGCCCCTCAGTCCAGATCCGGCAACCCCCGACTACCTCAACTCCATGCTGTCCTGTGGAGATCTTCAGGTGACGGCCAGCGCTCACTGCACGTTCTCCACagctcagaaagctgtaggaaaAGACAACTTTACACTCATCCCTGAGGGAACCAATGGCATCGAGGAACGCATGAGCATCGTCTGGGATAAGGCTGTGGCTTCAGGTAAAATGGATGAGAATGAGTTTGTGGCGGTGACCAGCACCAACGCAGCCAAGATCTTCAACCTGTACCCTCGCAAAGGCAGAATCGCAGTGGGATCTGACGCAGACCTCGTCATCTGGAACACCAAGGAGACCAAAACCTTCTCAGCCACATCCCACAATTTAACGGTGGAGATGAACATCTTCGAGGACATGGAGTGCCGGGGCTTCCCCGTGGTGGTCATCAGTCAGGGCAGGATCGTTCTGGAGGACGGGAAGCTGGATGCGATGGAGGGTTCGGGCCGATTCGTCCCCAGGAAGGCCTTCCCAGACTACGTCTACAAGAGGATTAAAGCGCGCAGCAGGatGGCGGAGGCTCGTGGTGTTCCTCGGGGTAATTATGACGGTCCTGTTCATGACGTCATCAGCATGACCAAGTCTGTTCCTCCGACTCCCACCACTAGAGGCCCCTCTTCCTCAGGCAAGAACACTCCAGGACCAGCCCGGAACCTCCACCAATCAGGATTCACCCTGTCCGGCACTCAGATGGACGACCACATCCCCCGGCGCACGGCACAGAGGATCGTAGCGCCCCCTGGAGGCAGATCCAACATCACCTCCCTGTCATGAGTGGGTTCCAATATGGGAAAAGGGCATCTGGCAAAAAAATCCAATTTCCCTTTGACTTCCatttaacagtaatattaatgacaataataatcataaccatgcaagaaacattttattcactacctttaaacacacactgcaatTCCCCCCATACACGACCCGTCCAGTACACAGCCAGGAGGATAGCATGACTTACAACATGACCAATTCCTGTTCCCTCAAACTCTCTTCTCATCTAAAATCCTCAACCCAAATCagacctgtcacgataattacagctctggaataaaataagagagcacttaaaaataatgagtttctttgattttaccaaa
>XM_022669122.1
TTATAGAGCATCTCCTTAATTATCATTAATGATCTCTGATCTGAAGAGATTATAGTGCAGTTATAACTCTTACTTTACTTTAAGGGGATCAGTAGGTTGTGGGTTCAGCACCACGACCCCAGCGGACAGCTCCCCGCCCACCCAacctcctgctctctctctctctgtttatatcCAGCTTATATCGAGTTATATCGCGTTATATCGTGGTTTTCTTCTTCAGCTTTCATCTCCAGCGTGTTTTTTCAGCTTTTCAGTACTAAAGCCATGGCTGAGAGGAGGCTCCTTCCCCGGGAAGATGATCAGTGCTCGCTGCTCTCCAGGCTGGGCACGGACAGCCCCAAACCGCGCGTGAAGTTCGGCGGGATGTTCTGCAACATCGAGGGCGCTTTCGAGAACAAGACGCTGAATTTCGAGTCGTTCAGCCCGGACTCGGTGAGGAGGAGCTCCAGGGCGCGGCTGCAGGACGCGGAGGACTCGGCCAGTGTCAGCGGCGTGTCCTGCGTGTCCAGCGTGTCCTGCGTGAGCCGCGCGCAACCGCAGCCTCCCGTTACGCGCAGCCACACCGTGGAGCAGCCCGCGGCTTACAGACGGGCTCCACGCGACAAGCGTgagGGTGATAAACTCATCATCAAAGGCGGGAAGATCGTGAACGATGACCAGTCCTTCTATGCTGACATTTTTATTGAGGATGGGACCATCAAACAGATTGGTGAGAACCTCATTGTGCCCAGTGGGGTGAAGACAGTGGATGCGTACGGGCACATAGTCATCCCTGGCGGCATTGACGTCAACACCAGCCTGCAGGCTCAGCACATGGGCATGAGCCCAGCTGATGACTTTTATCATGGAACCCGCGCTGCGCTGGCAGGAGGAACCACCATGATCATTGACCACGTTGTACCAGAGCCGGGCGCTAGTTTGCTGGCTGCTTTTGACCAGTGGAGGGATGTGGCAGATAAGAGGTCTTGCTGTGATTACTCTCTGCACATAGACATCACCCGCTGGCACGAGGGCATGTTCGAGGAGCTAGAGACGCTGGTCAAAGATCAAGgCGTTAATTCATTCCTGGTTTTCATGTCCTACAAGGACAGGTTTCAGAGCTCAGACTCACAAATGTATGAGATTTTTGGTATTCTGAGAGATCTGGGAGCTATTGCGCAAGTTCATGCTGAGAACGGCGATATTATtgatgagGAGCAGAAAAGGCTGTTAGACATGGGCATCACCGGCCCTGAGGGGCATGTGCTGAGCCACCCGGAGGAGGTGGAGACAGAAGCTGTGTATCGAGCCATCACCATCGCCAAGCAGGCCAACTGCCCGCTCTACATCACCAAAGTGATGAGTAGACCTGCTGCTGATGTCATCGCCAAGGCCAGGAAAAAGGGAATGGTCATTTATGGAGAGCCAATCGCAGCCAGTCTCGGCACTGATGGGTCACATTACTGGAGCCAAAACTGGGCTAAAGCCGCCGCCTTTGTTATGTCTCCGCCCCTCAGTCCAGATCCGGCAACCCCCGACTACCTCAACTCCATGCTGTCCTGTGGAGATCTTCAGGTGACGGCCAGCGCTCACTGCACGTTCTCCACagctcagaaagctgtaggaaaAGACAACTTTACACTCATCCCTGAGGGAACCAATGGCATCGAGGAACGCATGAGCATCGTCTGGGATAAGGCTGTGGCTTCAGGTAAAATGGATGAGAATGAGTTTGTGGCGGTGACCAGCACCAACGCAGCCAAGATCTTCAACCTGTACCCTCGCAAAGGCAGAATCGCAGTGGGATCTGACGCAGACCTCGTCATCTGGAACACCAAGGAGACCAAAACCTTCTCAGCCACATCCCACAATTTAACGGTGGAGATGAACATCTTCGAGGACATGGAGTGCCGGGGCTTCCCCGTGGTGGTCATCAGTCAGGGCAGGATCGTTCTGGAGGACGGGAAGCTGGATGCGATGGAGGGTTCGGGCCGATTCGTCCCCAGGAAGGCCTTCCCAGACTACGTCTACAAGAGGATTAAAGCGCGCAGCAGGatGGCGGAGGCTCGTGGTGTTCCTCGGGGTAATTATGACGGTCCTGTTCATGACGTCATCAGCATGACCAAGTCTGTTCCTCCGACTCCCACCACTAGAGGCCCCTCTTCCTCAGGCAAGAACACTCCAGGACCAGCCCGGAACCTCCACCAATCAGGATTCACCCTGTCCGGCACTCAGATGGACGACCACATCCCCCGGCGCACGGCACAGAGGATCGTAGCGCCCCCTGGAGGCAGATCCAACATCACCTCCCTGTCATGAGTGGGTTCCAATATGGGAAAAGGGCATCTGGCAAAAAAATCCAATTTCCCTTTGACTTCCatttaacagtaatattaatgacaataataatcataaccatgcaagaaacattttattcactacctttaaacacacactgcaatTCCCCCCATACACGACCCGTCCAGTACACAGCCAGGAGGATAGCATGACTTACAACATGACCAATTCCTGTTCCCTCAAACTCTCTTCTCATCTAAAATCCTCAACCCAAATCagacctgtcacgataattacagctctggaataaaataagagagcacttaaaaataatgagtttctttgattttaccaaa

Function

symbol description
dpysl4 Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds. Predicted to act upstream of or within neuron death and neuron projection guidance. Predicted to be located in cytoplasm. Is expressed in nervous system; spinal cord neural tube; and trigeminal placode. Orthologous to human DPYSL4 (dihydropyrimidinase like 4).

NR:

description
PREDICTED: dihydropyrimidinase-related protein 2-like, partial

GO:

id name namespace
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669121.1 False 2155 mRNA 0.52 14 12673983 12692068
XM_022669122.1 True 2636 mRNA 0.53 14 12671545 12692068

Neighbor

gene id symbol gene type direction distance location
jakmip3 jakmip3 coding upstream 6617 12603957 ~ 12664928 (+)
glrx3 glrx3,LOC107745700 coding upstream 576814 12073363 ~ 12094731 (+)
ptpre ptpre,LOC103359937,LOC107387775 coding upstream 1454173 11184890 ~ 11217372 (+)
foxi2 foxi2 coding upstream 1628652 11040698 ~ 11042893 (+)
trim65 trim65 coding upstream 2185747 10476390 ~ 10485798 (+)
LOC103039392 chmp6b,chmp6,LOC108429718,LOC107749864,LOC107684156,LOC107755461,LOC107690936 coding downstream 12270 12704338 ~ 12710368 (+)
LOC103024023 LOC108273716,LOC108429130,LOC107690938 coding downstream 25585 12717653 ~ 12831319 (+)
tekt3 tekt3,LOC107753251,LOC107684491 coding downstream 272714 12964782 ~ 12976020 (+)
pmp22 pmp22,LOC107684480 coding downstream 299075 12991143 ~ 13009673 (+)
psme2 psme2,LOC107653260,LOC107716467,LOC107556770,LOC107674582,LOC107551845,LOC107727955 coding downstream 605480 13297548 ~ 13305858 (+)
G35990 NA non-coding upstream 1397 12669922 ~ 12670148 (+)
G35984 ppp2r2d,LOC105009682,LOC107553689 non-coding upstream 68749 12586898 ~ 12602796 (+)
G35974 NA non-coding upstream 96097 12573915 ~ 12575448 (+)
G35973 NA non-coding upstream 99200 12570113 ~ 12572345 (+)
G35977 NA non-coding upstream 101965 12569178 ~ 12569580 (+)
G35972 NA non-coding downstream 2762 12694830 ~ 12695616 (+)
G35992 NA non-coding downstream 4881 12696949 ~ 12697208 (+)
G36004 NA non-coding downstream 80920 12772988 ~ 12794204 (+)
G36011 NA non-coding downstream 143211 12835279 ~ 12837320 (+)
G36106 NA non-coding downstream 262343 12954411 ~ 12954711 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other upstream 104604 12111690 ~ 12566941 (+)
G35967 NA other upstream 300583 12366540 ~ 12370962 (+)
G35903 NA other upstream 869341 11801458 ~ 11802204 (+)
dock1 dock1,LOC107740868 other upstream 1669740 10747637 ~ 11001805 (+)
G35744 mrpl38 other upstream 2195762 10471380 ~ 10475783 (+)
G35995 NA other downstream 10237 12702305 ~ 12703056 (+)
LOC103039668 LOC108435045 other downstream 810178 13502246 ~ 13520702 (+)
G36371 NA other downstream 1771069 14463137 ~ 14463639 (+)
LOC107197918 NA other downstream 1872857 14564925 ~ 14567912 (+)
G36439 LOC103041415 other downstream 2097312 14789380 ~ 14790833 (+)

Expression


Co-expression Network