avl9 (avl9,LOC102783546)


Basic Information

Item Value
gene id avl9
gene name avl9,LOC102783546
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13312552 ~ 13336023 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669134.1
CTGGTGACCCGTATGAACACCGTGCGGTGGCGAAGTGGCGACGTCACCCGGCAGTGAAGTCACGCGCAGCggaaatggtgtgtgtgtgacgggATTAAGGAAGAAGAGTCTGTGCGGGAGATGCGGGGAGCTGCTGTGTATGTCAGAGCTGCGCTGATCTCTCAGTTATTATAACTGTGACTCCGGGTTCAGTCAGGGTGGGTTTACCCGCGGTATGGAGTCTCTCGGTCAGGAGGAGGCTAAAGGGCCCGTGCTGCACATCGTGGTGGTGGGATTTCACCACAAGAGAGGCTGTCAGgTGGAATTTTCATATCCACCCCTGATTCCTGCTGAAGGCCATGACAGTAATAATCTGccagaaaaatggaaatacctGCCCTTCCTCGCTCTGCCTGACGGAGCACACAATTATCAGGAAGacacCGTTTACTTCCATTTACCGCCTTTGAGTGAAGAAAtgaagtgtgtgtatggtgtctCCTGCTATAGACAGATTGAAGCAAAGGCTCTGAAAGTGCGACAAGCTGATGTTACGAGGGAGACGGTgcagaagagtgtgtgtgtgcttagcAGAGTGCCACTGTATGGTCTAATTCAGGCTAAACTCCAGCTTATCACACATGCCTACTTTGAGGAGAAAGACTTTTCTCAGATCTCCATCCTCAAGGAACTGTATGATCACATGAACGGTTCATTAAGAGGTACCACGCTAGAGGGTTCTCAGGTGTATCTAGGCTTATCTCCACGGGATTTAATACTGCACTTTAAACACAAGaTTCTAATTCTCTTCAAGTTGGTCCTGTTGGAGAAGAAGGTGCTGTTTTATGTGTCTCCTGTCCATCGATTAGTGGGAACTCTAATGACTGTCCTTTCTTTATTCCCTGgtatGATTGACCATGGCCTGGTGGACTCCTCTCACTACACCTGTAAGAGCAGCGTATCAGAAACCTCAGACAGTCCTGACCCAGCCAAGGTCGTCCCCACAGCTGGAGAACAGCAGCGTAAAACTGACTGTAAAACTTCTATTGCTGATGCCACAGAGGACGAGTCTTGTGCTTTTGATCACTCAGAAACCCACGAATCACATGCCTCAGGCAGCCCTCTGAGCCACCCCCAGCCACACCCACCCTCCCACACATCGCCAGATTCCTCTGAGAGCGACTGGGAGACGCTGGACCCGAGTGTGTTGGAGCCCGGGGAGCGGACAGACGGGACAGTGAAGAGTCTGGACACAGAATCCAGTGAGCCAATCACAGTCCAGCCCAAATCTGCTGCAGACCAGGGTCAGCTGATCCAGGGGCTGGTGTCTGGTCTGGAGGAGGACCAGTACGGTCTACCACTTGCAATTTTTACTAAGGGTTACTTGTGCCTACCCTACATGGCCCTGCAGCAGCATCATCTGCTGTCGGATGTGAAAGTGCGAGGTTTCGTTGCCGGGGCAACCAACATCCTTTTTCGCCAACAGAGACACCTCAGTGATGCTGTTGTAGATGTGGAAGAGGCCCATATCCATGTGGATGATCCAGAGCTACGCAGGATATTGGGTTTATCCACAGCAGACCTGCGATTCACAGACTTCCTGATCAAACATGTCACTGAAAACAGAGAGGACGTGTTTCTGGATGGAACGGGCTGGGAAGGAGGAGACGAGTGGATCAGAGCACAGTTTACTCTGTATTTACACTCCCTCCTAGCATCTACACTACAGCAAGATAATGAGAAGCTGTTGGCAGACTATGGCTCTGCCTTCATCTCTGCCTGGAAGATCACACACAATTACAGAGTATGGTTCAGCAACAAGCACCCAGCCATGGCTGAGATTACTCCAGGTCATCCATTCCAGGGACAGTATAGTGTGGCTGATGTGAAGCTGCGCTTGTCACATTCAGTGCAGAACAGTGAGCGGGGAAAAAAGCTTGGGAACGCTGTGATGACCACCAGCCGCAGTGTGGTGCAGACTGGAAAAGCTGTAGGTCAGTCAGTGGGCGGAGTTTTCACCAACGCTAAATCTGCCATGTCCTCCTGGTTCTCCACACTGGCCCCGCCCCCCAGTGACCAATCCACCTTCAGACTCTACAGCAAACAAACAGTGACCTCTTCATGcctcattcacactgttcacCAGGATTCATCTTCACACTTATGGTTCTGGAtggtttactgtatttttatgatCACAGCATAAGTTTACTTTTACCTTTCTTCATCTTTTAGGTCAGAGAATCAATGTTAGAAGCAGTTCTACTGTTCAGCTTCAAAGTATTCAGTCTCGAAATGATTTAGAATTTGTCCAGTACACTTCCTACTTCCTTTAGCCATCTTTAAGCATCATCATGTCTAACCAAAATAATTAAGTACTGAAGCTTGTTGCCTTTAGCAAtccagaattatttaaaaattctaCAGAGCTACAAATCATTATCAGAAATATTAACATCGTATTTGACATAAGATGAGTGGAAATAGTAACACTGTCACTGAGACAAAAGGGCAGTGTGGATTATGCTGATTCTTTtgcttgtgttttaaatgaagtACTTTTGACAGTCTCAGGTTTAGTCGCATTGACTCAAAGAAAGAAGGGATTTTACATTTGTAGCCTAAAAATGACATCAAACtattaaaaacaacacacatgGAACTGAGAACTCAGAGATTTGCTCTCATATAACCATTACCAAGGTTTTAGAAACTGTATAGGCAGTTTCTTACACTCACAGCTTCTTACACTCACAGTCCATTTCTGAGGCTAGGATTTAAAAGCCcaaacagctctgtaaaaattaagagaccacttcagtttctaaataattttctctgattataggtatatttatttataggtatatgtttgagtaaaaatgaacattgttcttttattctataaactatatacaacatttctcccaaataagttcagaaatcaatatttggtggaataaccctggttcttaatcacagttttcatgcatattggcatgttctcctccaccagtcttacacactacttttggataactttatgccactcctggtgcaaatatgtaagcagttcagcttggtttgatggcttgtgatcatccatcttcctcttgattatattccagttggtcaaataaaaaaaaaaactcatcatttttaagtggtctcattttttcaaGGGCTGTATATTCAATGCCTTTCAATGAAAAAACTCTTCTGTTTAGCTGATGAGTTGACTCAAGTGTCTTTAATGATGTAAAACTCTAAAACCCTGCAGCACTGTGGCCTTGAGTCAACAGAGCTGGCCCATTCCAAcctgcagttttaaaaaatatatgaatagtTAAGAAAGCAGAACATAAATGTATGTGTGAAATTGttatataataaacagagtatatactataatataatgtaaagtcTCACCATAGactatttaagtgtttatttgtttggttggttggttttgaCCATTTTCTGGGCTGGTTATCCTGTTTGTTTTCCTCGGAACATGTTTAAAACGTATAAAATGGAATATGGCTGCTGTGCTCTCATGTATATGTATCTAGTTTCTGTGTCATTAGCTTGTGTTTAGATgtctcaaaacacacacacagattgtgTTTGAACAATCCTTGTGAACTCATACAAGGCTTCCCTTCTAGGCTAAGTGAACCAGTACGTACCTAATGGCCTTATTTAATATGgcattttaaattaatgaaaCCATTTTCCCTTCTTTTGTCTCTCTCATATTGGTTATTAACACCAAAAACACATCTTTTatatctgtttctgttttctcattttctgttcgTTTGTgctattattgtaaaataatggTCATATCTAATGGGATGACATGATCAATTTTATTGTTGTTCTTTGTGTTTAAATGTAGAGTGATTTCTGGTTAGTgtttaaagggcccatatccttgatttttaaactataaataatgcaccatattgttttttttttgttttttttttgtgaaattttgttccattttctctcttctctgtgtTGGAgcggtttatttattaatgtccTTAAATTGCTTTTCACTTTATATTGAGGTATTTAGAGATATATCAAAAATGAACTAATGATGCAgatgctgtttatttttttggtgatCTACAATATTTACACATCATTGAGTTccatctattaaataaaatacttttgaaGACCTTA

Function

symbol description
avl9 Predicted to be located in recycling endosome. Predicted to be active in cytoplasm. Orthologous to human AVL9 (AVL9 cell migration associated).

NR:

description
PREDICTED: late secretory pathway protein AVL9 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669134.1 True 4182 mRNA 0.42 16 13312552 13336023

Neighbor

gene id symbol gene type direction distance location
LOC103042649 NA coding downstream 15122 13271875 ~ 13297430 (-)
LOC103042955 LOC108431373,LOC106578596,LOC103365861,LOC106590056 coding downstream 51726 13254448 ~ 13260826 (-)
LOC111192419 NA coding downstream 103045 13207594 ~ 13209507 (-)
trnam-cau_20 NA coding downstream 112314 13200166 ~ 13200238 (-)
trnam-cau_19 NA coding downstream 114777 13197702 ~ 13197775 (-)
kbtbd2 kbtbd2,LOC107711671,LOC107674719,LOC107660299,LOC107708283,LOC107551836 coding upstream 3470 13339493 ~ 13351094 (-)
cdh20 cdh20 coding upstream 25713 13361736 ~ 13385263 (-)
LOC103043889 ppp1r9bb,LOC107741705,LOC107684769,LOC107713069,LOC107675672 coding upstream 55796 13391819 ~ 13420942 (-)
dnajc9 dnajc9,LOC107684784,LOC107751706 coding upstream 172933 13508956 ~ 13514238 (-)
grid1 grid1,grid1b,LOC106578986,LOC106589364,LOC103147060 coding upstream 546434 13882457 ~ 14439229 (-)
G36114 NA non-coding downstream 301540 13006516 ~ 13011012 (-)
G36125 NA non-coding downstream 306805 13005499 ~ 13005747 (-)
G36124 NA non-coding downstream 310533 13001731 ~ 13002019 (-)
G36123 NA non-coding downstream 317665 12994574 ~ 12994887 (-)
G36122 NA non-coding downstream 321131 12991074 ~ 12991421 (-)
G36223 NA non-coding upstream 110024 13446047 ~ 13450206 (-)
G36236 NA non-coding upstream 165273 13501296 ~ 13504050 (-)
G36253 NA non-coding upstream 223195 13559218 ~ 13573367 (-)
G36257 NA non-coding upstream 251763 13587786 ~ 13609936 (-)
G36283 NA non-coding upstream 342773 13678796 ~ 13758346 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 1027 13307088 ~ 13311525 (-)
G36074 NA other downstream 601007 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 1240125 12067533 ~ 12072427 (-)
clrn3 NA other downstream 2229370 11053659 ~ 11083182 (-)
rpl38 NA other downstream 3881324 9426075 ~ 9431228 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 139143 13475166 ~ 13500177 (-)
c4h10orf88 LOC103041415 other upstream 1449929 14785952 ~ 14797212 (-)
G36677 NA other upstream 2411377 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 2501082 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 3577547 16913570 ~ 16915285 (-)

Expression


Co-expression Network