cdh20 (cdh20)


Basic Information

Item Value
gene id cdh20
gene name cdh20
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13361736 ~ 13385263 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669135.1
tcagtgtgtagtgatgcaGTAAAGCAGGACGTCTAACACTCTGCAGAAGGAAATAGAGACGAGACTTGTAGCTGATGCACGCGATAAAGacaggagaagaagagaaggagaggATTGACACCTGAAATTAGAGACATTTCTCTGGACCATCCTACTGTCCAGACCAGCTCCAGACTCCTGCTTTAACATGGCCAGTGTGTTACTGAGCAGAAGAACTTTTACCATGATCCTGATGGTACTGTTGTTGTTAAACCTTAAAGAGGTCCTGCTGGAAGATCAAGTGGAGAACAATCTGAAAGTGAAATCTTTGAGCAGAGTGAAGAGAGGATGGGTTTGGAACCAGTTCTTTGTTCTCGAGGAGTACACTGAACAGAAACCTCTGTACATCGGAAAGCTTCACTCGGACATGGATATTGGGGATGGCTCCACTAGGTATACCCTGTCTGGTGAAGGTGCGGGTAATACTTTTACTCTGGACGACAGCACAGGTGATATCCATGCCATCAAGAGGCTAGACCGTGAGGTGAAGGCCCAATATGTTCTCCGAGCTCAAGCCCTGAACCGCGAGACGGGGCGTCCGCTAGAGCCTGAGTCAGAGTTCATTGTGAAGATTCAGGACATCAATGATAATGAGCCAAAATTTCTGGATGGACCTTATAGAGCAACTATTCCCGAGATGTCACCAGTTGgCACATTTGTGATCCAGGTGACAGCTGTAGATGCTGATGACCCATCATATGGTAGCAGTGCACGTTTGGCGTATAGTATTATTGAAGGACAGCCATACTTCTCTGTGGATGCAAAAACAGgTGAAGTGCATGTGTCTCTGCCTGACATGGACCGTGAGGTCAGAGAGCAGTACCAGCTGGTTATTCAGGCTAAAGATATGGAGGGTCAACTGGGTGGTCTGGCAGGAACAGCCACGGTCAACATCACACTCAGCGACATCAACGACAACCCACCCAAATTCACTCAGCAGCTGTACAAAATGAGTGTTTTAGAGTCAAGTCCAGTAGGATCAGTGGTGGGACAAATCCAAGCTAAAGACCGTGATGTTGGCATTAATGCGGAAATGAAATACAGCATTATCGGAGGAGACGGACAAGACTTCTTCGACATTAGCACTGATGTCAGCAACCTGTATGCCATCATCACTGTTAAAAAGaaatTGGACTTCGAGACGAAACATAGCTACACTCTTAAGGTGGAAGGATCTAATACTCATTTTGACTCGCGCTTTAAGACTAAAGATCCACTCAGTGATGTGACGACTGTCCATGTGAGTGTGGAGGATGTGGATGAAGCTCCAGAGTTTGATTCTCAGTTTTACTATGTAGAAGTTCCTGAAGATGCTGAAATCggaacagtgtttaaaaccgTCTCTGCCAGGGATCCAGACACTGCAAACAACACTATAAGGTATTCCATAGAGCGTAAGAGTGATCCtgaaaagtgcttttatatGGACGTTTCTAACGGCTCTCTGATGACAGCGTTACCTCTGGACAGAGAAAAAGCCAGCTGGCACAACCTTACTGTGTTAGCTATGGAGATGAATAACCCTTCAAAGATTGGCAGTGTATTCGTTGCTATAAGGGTCCTAGACGTAAATGATAACCCACCATCACTGATGCAGTACTATGGGACGTTTGTGTGTGAAAATGCAAAAGCAGGACAActgATTCAGACAGTAACAGCTGTAGATCCAGACGAGCCCACAGGGGGACAGCATTTCCACTACAGTTTAGCCCCAGAAGCTGCTAATAATCCCAACTTCACTCTGCGAGATAATCAAGATAACTCAGCTTGGCTTTTAACCCGGCGTGGTGGCTGGTCAGTTCAGACGCAGAGTGTGTATTATTTGCCCATTCTGGTGTCTGATGGAGATCAGCCTGCTCAGTCCAGCACCAGCACACTAACCGTACGTGTGTGCAGCTGTGACTCAGATGGAGAGGTTCTATCCTGTGATGCTGAAGCCTACACAATGCCAGCCAACCTGAGCCAAGCTGCACTTATAGCCATCCTCGCCTGCGCCTTCGTATTGATTGTGATGATCATTCTGACGTTGTCCCTGCGGAGCCAAAGCAAAAAGCCTTACTTCACCAAAGAGGAGGAACATCTGCACGAGAACATTGTGCGTTATGATGACGAgggcggaggagaggaggacaCTGAGGCTTTTGATATTTATGCTCTATGGAGCCCTCGTGTGGAACCACTAACAAACTATCATAAACTGCGGCAGGACATGCTACCTGAGGACAAGAGCCTTTCCCGACATGTCCCTCAGCACTGCGTTACGGAAGTGGGGGAGGACAGCTCTAACATTCACAGCTACGTGGAGGCTAAACTCTACAAAGCCGATTCAGACACTTGCGCCCCACCGTACGATTCCCTTCAGACATATGCATACGAAGGTGAAGGATCTATAGCGGGATCCCTGAGCTCCCTGCAGTCTCAGACTTCACATACTGACCATGAATATGACTACCTAAACGAGTGGGGGCCACGGTTTCTTAAACTAGCGGAAATGTACGGTGTCAGCAACAATCACAGCCCGATGTGGTAGAGCTTCAACATGTCTAAActacataaacatatataaactaaaGCATGCTCTCTACTGGAAGTACaaataaaaagagataaatgTGAGCATTGTCACATTAAGAAAGAATGAGGAAGGAACATTCTTTTGAAAAGGAACAAAgtctaaacacattaaaacaaaagtcTGTTGGAACCATGCTATATGAATGTAGGAGATGGATGGGATTAATAGACATGGTACAGTCATTAAGGGAATAAAGACATTGCCACGTTCTTCAGCATGAACAGCTACTAGAATGAGCCTGAACTAGGCCTTTCCTCCACTTCCACTCGGAGGggaaacttttatttttctatttttttttgtattttttctagtTAACTATCTTTCAACATGTACAAGGCTGTTTAGCCTTTTATACAATTTGATACCACAAAATCCATGTATATTCATCATTTTGTTTAGTCTACAGAAGTCTGGATCTACTCACTGACATGCAAAACAATATGTAATTATAACCCTCTGGATTTTAGCCAAGACCTGTATGATTTAGCATACAGCATACAAATtttttaaccctc

Function

symbol description
cdh20 Predicted to enable cadherin binding activity and calcium ion binding activity. Predicted to be involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell morphogenesis; and cell-cell junction organization. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction.

NR:

description
PREDICTED: cadherin-20

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06807 CDH20; cadherin 20, type 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669135.1 True 3132 mRNA 0.45 12 13361736 13385263

Neighbor

gene id symbol gene type direction distance location
kbtbd2 kbtbd2,LOC107711671,LOC107674719,LOC107660299,LOC107708283,LOC107551836 coding downstream 10642 13339493 ~ 13351094 (-)
avl9 avl9,LOC102783546 coding downstream 25713 13312552 ~ 13336023 (-)
LOC103042649 NA coding downstream 64306 13271875 ~ 13297430 (-)
LOC103042955 LOC108431373,LOC106578596,LOC103365861,LOC106590056 coding downstream 100910 13254448 ~ 13260826 (-)
LOC111192419 NA coding downstream 152229 13207594 ~ 13209507 (-)
LOC103043889 ppp1r9bb,LOC107741705,LOC107684769,LOC107713069,LOC107675672 coding upstream 6556 13391819 ~ 13420942 (-)
dnajc9 dnajc9,LOC107684784,LOC107751706 coding upstream 123693 13508956 ~ 13514238 (-)
grid1 grid1,grid1b,LOC106578986,LOC106589364,LOC103147060 coding upstream 497194 13882457 ~ 14439229 (-)
wapl LOC108435041 coding upstream 1180675 14565938 ~ 14616622 (-)
c4h16orf62 cunh16orf62,c13h16orf62,zgc:163107,cssa28h16orf62 coding upstream 1449189 14834452 ~ 14861783 (-)
G36114 NA non-coding downstream 350724 13006516 ~ 13011012 (-)
G36125 NA non-coding downstream 355989 13005499 ~ 13005747 (-)
G36124 NA non-coding downstream 359717 13001731 ~ 13002019 (-)
G36123 NA non-coding downstream 366849 12994574 ~ 12994887 (-)
G36122 NA non-coding downstream 370315 12991074 ~ 12991421 (-)
G36223 NA non-coding upstream 60784 13446047 ~ 13450206 (-)
G36236 NA non-coding upstream 116033 13501296 ~ 13504050 (-)
G36253 NA non-coding upstream 173955 13559218 ~ 13573367 (-)
G36257 NA non-coding upstream 202523 13587786 ~ 13609936 (-)
G36283 NA non-coding upstream 293533 13678796 ~ 13758346 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 50211 13307088 ~ 13311525 (-)
G36074 NA other downstream 650191 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 1289309 12067533 ~ 12072427 (-)
clrn3 NA other downstream 2278554 11053659 ~ 11083182 (-)
rpl38 NA other downstream 3930508 9426075 ~ 9431228 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 89903 13475166 ~ 13500177 (-)
c4h10orf88 LOC103041415 other upstream 1400689 14785952 ~ 14797212 (-)
G36677 NA other upstream 2362137 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 2451842 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 3528307 16913570 ~ 16915285 (-)

Expression


Co-expression Network