arg1 (arg1)


Basic Information

Item Value
gene id arg1
gene name arg1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13460651 ~ 13471964 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669141.1
gaTTGAGAGAGACGATAGAATGacagggacagtttgtgtgtgtgtgagcgctgTGGGCGTGTCACGCGCTACGCTTTAATCCGCGGGAGCGCGCGCAGTTTGCTGTGAGTCTGTCCTCGTTGTGAAGTGATGCGGCGCGCGCTGGGGCAGCTGCGCTCTGTGGGGATCATCGGGGCTCCTTTCAGCGGGGGGCAGCCAAAGGATGGAGTGCAGTTGGGACCAGACCTGATCCGGGCAGCTGGACTAGTGAACAGACTCAAAGAGCAGGGCTGTGATGTAAAGGATTATGGGAACCTGGCGTTTGAGAGCGTGTCCAGCGATGAGCCGGTTGGGTTGGCGAAGAGGCCGCGGGCGGTCGGACGTGCCAACCAACAGCTTGCGGACGCTGTGCGGAGAATCAAGCATGATGGCCACACCTGTGTGATGCTTGGGGGGGATCACAGTTTAGCGATTGGTTCAATCCACGGTCATGCAGCctctggaagtgaggtgagtGTGGTTTGGGTGGACGCTCATGCTGACATAAACACGCCCCTCACCACTACGACTGGCAACATCCACGGCCAGCCCATGTCCTACGTCATCCACGAGCTGCACAACAAGATACCTGTCATACCAAACTTTTCCTGGATAAAGCCCTGTATAGCAGCCAAAGATATTGTGTACATAGGACTCAGAGATGTAGACCCAGGAGAGCATTACATTTTGAAGTACCTCGGAATCAAGACCTTCTCCATGTCAGAGCTAGATCGTCTTGGAATTGCCAAAGTCATGGAGCAGACCTGTGATCACATATTTACAAAGGTGAAAAAGCCAATCCACCTGAGTTACGACATCGATGCTCTGGACCCCTCAGTGGCTCCTGCGACGGGGACGCCTGTGGTAGGGGGTCTAACATACAGAGAGGGGGTCTACATCACAGAGCACATCTGTCAAACGGACCTGCTGTCTGCTGTCGATATCGTGGAGGTGAACCCGAAGCGAGGAAGAACAGAGGATGAGGTTCAGTCTACAGTGAATGCAGCGGTGGATCTCGTCCTGGGATGCTTTGGAAGAGTCCGCGAAGGATCGCACCCAGCTGACTACAAAATGCCTGATCCATGAGTGCCTAGAACATCAACACTGTGCcatgacaataaaatctttcTAAACAATAA

Function

symbol description
arg1 Predicted to enable arginase activity and manganese ion binding activity. Predicted to be involved in arginine catabolic process to ornithine. Predicted to act upstream of or within arginine metabolic process and urea cycle. Predicted to be active in cytosol. Is expressed in digestive system; eye; and reproductive system. Human ortholog(s) of this gene implicated in asthma; hepatocellular carcinoma; and hyperargininemia. Orthologous to human ARG1 (arginase 1).

NR:

description
PREDICTED: arginase-1-like

GO:

id name namespace
GO:0006525 arginine metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0004053 arginase activity molecular_function

KEGG:

id description
K01476 E3.5.3.1, rocF, arg; arginase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669141.1 True 1157 mRNA 0.54 8 13460651 13471964

Neighbor

gene id symbol gene type direction distance location
heatr1 heatr1 coding upstream 680 13423037 ~ 13459971 (+)
LOC103038526 NA coding upstream 101363 13352855 ~ 13359288 (+)
psme2 psme2,LOC107653260,LOC107716467,LOC107556770,LOC107674582,LOC107551845,LOC107727955 coding upstream 154793 13297548 ~ 13305858 (+)
pmp22 pmp22,LOC107684480 coding upstream 450978 12991143 ~ 13009673 (+)
tekt3 tekt3,LOC107753251,LOC107684491 coding upstream 484631 12964782 ~ 12976020 (+)
nudt13 nudt13 coding downstream 29083 13501047 ~ 13508892 (+)
ccser2 NA coding downstream 53799 13525763 ~ 13630014 (+)
btbd16 NA coding downstream 1151265 14623229 ~ 14645576 (+)
LOC103046321 plekha1 coding downstream 1179686 14651650 ~ 14702499 (+)
LOC103041103 htra1,LOC107660481,LOC107745581 coding downstream 1248915 14720879 ~ 14775197 (+)
G36166 NA non-coding upstream 66071 13392645 ~ 13394580 (+)
G36155 NA non-coding upstream 124217 13325935 ~ 13336434 (+)
G36154 avl9 non-coding upstream 135081 13323174 ~ 13325570 (+)
G36146 NA non-coding upstream 149043 13307093 ~ 13311608 (+)
G36129 NA non-coding upstream 182295 13216784 ~ 13278356 (+)
G36177 NA non-coding downstream 2190 13474154 ~ 13474794 (+)
G36175 NA non-coding downstream 3177 13475141 ~ 13477939 (+)
G36244 NA non-coding downstream 89164 13561128 ~ 13564733 (+)
G36273 NA non-coding downstream 190466 13662430 ~ 13662847 (+)
G36276 NA non-coding downstream 204849 13676813 ~ 13677131 (+)
G35995 NA other upstream 757595 12702305 ~ 12703056 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other upstream 893710 12111690 ~ 12566941 (+)
G35967 NA other upstream 1089689 12366540 ~ 12370962 (+)
G35903 NA other upstream 1658447 11801458 ~ 11802204 (+)
dock1 dock1,LOC107740868 other upstream 2458846 10747637 ~ 11001805 (+)
LOC103039668 LOC108435045 other downstream 30282 13502246 ~ 13520702 (+)
G36371 NA other downstream 991173 14463137 ~ 14463639 (+)
LOC107197918 NA other downstream 1092961 14564925 ~ 14567912 (+)
G36439 LOC103041415 other downstream 1317416 14789380 ~ 14790833 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 1960865 15432829 ~ 15440157 (+)

Expression


Co-expression Network