c4h16orf62 (cunh16orf62,c13h16orf62,zgc:163107,cssa28h16orf62)


Basic Information

Item Value
gene id c4h16orf62
gene name cunh16orf62,c13h16orf62,zgc:163107,cssa28h16orf62
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14834452 ~ 14861783 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669166.1
ACTTCCGCGCTGTTCACATGACACTGATTTGAAGATGGCTTCTGTTCAGTGGCATGCTCGTGTGAGGAAATACGGTGCAGAGCTTCAGAGATGCCAATTAGAGGCGACACCAGTGGAGCAGGGAGACTACCATCCCCTCAAACCCATTATAGTGACAGATTCCAGGTCACGACGGGGAGGACGCAAAGGTAGCACGTCTtcatcctcttcttcctccagcTCGGTGGCCATGGACCCTCTGAGCTCCATGATGGAGGGAACAGACCCCCTATCCCTTTTTGCTGCAGCTTCAGCCAGCGAAGTGCCCACACTCTCGCACAGCAGCTCTTCAGTGGAGTTGGGcaggaaacagagagaaaacgagGATGAGGTGGGTGCAGACTTTGAGCCGTGGTCAGCCAAGCGTGGAGAGATCCTGTCCAGATTCACCACTACAGAGAAACTTTCCATAAATCTCTTCATGGGCTCTGAAAAAAACAAGGCCTCCAGTCCCAGCTCTGCTGTATCAGAGAAGGTCCGTACACGTCTGGAGGAGCTGGATGACTTGGAGGAAGGCTCTCAGAGGGAGCTGCTGAACCTCTCTCAGCAGGACTATGTGAAGCGGATTGAGGAGCTTAACCAGTCGCTGAAGGAGGCCTGGGCTTCAGACCAGAAAGTTAAAGCCCTGAAAATCGTCATTCAGTGCTCCAAGCTTCTGTCAGACACCTCAGTGATTCAGTTCTACCCAAGCAAGTTTGTCCTCATCACTGACATCCTTGACACCTTCGGTCGTCTGGTCTATGAACGTATCTGGTCAATGTGTTCAGATCCTCGTCCTCAACCAGACTCTTTCTCTGTGGAGGATGTGAACGACACGGCCAAAGAGACATGCCTTAACTGGTTCTTCAAGATCGCGTCCATCAGAGAACTCATTCCTCGGCTATATGTGGAGGCTGCCATACTGAAATGCAATCGTTTCCTCAACAAAACTGGGATTCAGGAGACTTTGCCAAGGCTGACTGCTATGATCCGTGGGATTGGGGACCCCTTAGTGGCAGTATATGCCCGGGCCTACCTGTGCAGGGTGGGCATGGAGGTGGCCCCTCACCTGAAGGACAGTCTGAACAAGAACTTTTTCGACCTGCTGGCTTCTTTCCGCCAAATTCACAGTGACACAGTGCAGAACCAGTTGGTGATCCAGAGGGTGGAGATCCCAgtctacctcacactctactCCCCTGCCATCCACTGGATCCTGCAGTGTGTGGCCTACAGAGCACCAGATgtgctGCTCACAGAAATGATGGAGAGGTGCAAGAAACTTGGCAACAATGCTCTTCTACTCAATTCTGTTATGTGGGCTTTCCGGCCTGAGTTTGTGGCTGCAAGAGCCACAGATTTCATTGGTATGATCAAGGACTGTGACGAGGCTGGCTTTCCCAAGcacctcctgTTTGGCTCTCTGGGCCGAAGTCTGGCCTGTGCTGACCCTGCAGAGAGTGAGAGGCTGCCCATCCTCAATGAAGCATGGAAGGTCATTACTAAAGTGCGCAGTCCACAGGATTATATCAACTGTGCTGAAATTTGGGTGGAGTTCACCTGTCGTCACTTTACAAAAAGAGAAGTCAACACTGTGCTGGCGGACATCATCAAGCACATGACCCCTGACCGTGCGTTTGAGGATGCTTATCCACAGTTGCAGTCAGTGATGAAGAAGATCCTCACATATTTCCACAACTTCTCTGTGCTCTTCTCCATGGAGAAGTTCTTGCCTTTCATGGACATGTTCCAGAAAGACAGTGTAAGAGTGGAGGTCTGCAAGTCTATCATGGAGGTCTTCATCAAGCATCAGCAGGAACCGACCCGAGATCCTGTCATCCTTAACGCCCTGCTGCACGTCTGCAAGACCATGCATGACTCTGTAAATGCTCTCACGGTGGAGGATGAGAAAAGATCTCTAGCTCTTCTAATCAACGGCTTTATCCGTATGGTGTCGTTTGGCCGTGACTTTGAGCAGCAACTGAGCTTCTGTGTGGAAGCCAGAGCCACATTCTGCAACCTAGAAACAGTTATTATTCAGCTTATTCATACGGTGAACCAGCTAGCTATGGAAACGAAGCGGGTGATGGGAGGCAACCACTCGCGCAAAACAGCAGCGTTTGTCAGGGCGTGTGCAGCCTACAGCTTCATCACTATCCCCTCTCTGACGAGCATCTTCAGCCGCCTCCACCTCTACCTGCTGTCAGGACAGGTAGCACTGGCCAATCAGTGCCTTTCCCaagCGGATGCCTTTCTGAAAGCTGCGGTCAGCATTCTGCCAGAAGTGCCACGCACCATCAGTGTGGAGGGCAAACAGCGCTCTTCTGAAGCCTTCCTGCTGGACTTCATAAACAGCTTCCTATCCACTCTGCTGGTGGTTCCGGACCACCCCGAGCAGGGAGTGTTGTACCTGGTGAGGgggctgttaaacatggtgcagGACTACACGTGGGAGGACAACAGCGATGCTAAAGTGCGAGTGTATATCAGCGCTCTGCCACTTCTGGCTGCCATGAGTCAGGAGAACTATTTGTACACCATCCCTAAAGTGGACTCTAACGAGACGCTGTATGGAGGAGACCCTAAGTTTGTTGCTGAGATCAGTCGACTGTGTGAGACTCTCATTGGTCAGGTGCTGGACCACCTGAAGACCCTCGGACGAGAAGAGggagTTCGCCGGCAAGGCAGCATCGCATTTGCTCTGTTCAGCGTTCTGCTGGCTCATGGAGATCTGCGCAACAACAAACTCAACCAGCTGGCTGTCAACCTTTGGAACCTCAGCCACAAGAACGGCTACTGTGAGACACGAACTTCAGTCCGCACCCTGGAGCATATCAAGCAGCAAGCCCAGCAGCCTGAACTGTCTCACCTATCGGATATGCTGCTGCGCCTTTCCCTGCAGTCACGAGCCTAGAAATGTGGTCTTTACGTGGACCATTACTTGGCTTTATCATCCTCTGGATTCCAGGTGTGCTTTCGATGAGCATTGCTTTCAAAAACAGAAGCCAAGAAAGAATGGACACCATAAAAGTCTCAGTAATCTTGTAAAGACCTAACCGGACGGGATACGTTTCTCAGGGGAggtctgtgaaaaatatgtcacacttctactcagtgataaaactcctgcatccggactgcaattgaaaaaacaggagaaccagtaagtttttaggctttcttggtcacatgacattgttttcagtagctcctccatttccactccctGTTGTgcttacatggatctccgtggaaacatgcgcccaaagtgtaattacggtgcgtggcagtggacaaatagctatttattAAGCGCAAGGTGACGAAACTTAGAGATGTGtgtccggacaggaataaaattacctgaggaccacagagtttagcggaaaacagtaggtaattcagactttaattttctcagagaacgtctgagaaaaacacttacatggtcgttccggacgagaataaaaaatcacagaggaccccctgagaaaaaaaagagaaaaatactccaggaccccctgagaaactaatccgatccagatagggcttaagacttaggattttcattcattaaaaatgaatcaTTTTAACATTCCTAAAACAATAGCAATgccatgaagaaaaaaatgaatagccCAGATTCTGTTGACCAGCCAAGATATGTTCGGTATCTGATGGTGCTTTTTAGTTTAGAATGAGAGAGGTGTTAATCTAAaactaatcttaaaaaatatatatatttgtaattatagtctaaagttttaaaattacaGTGTTTGCCAAACAAATATCTGGATGCCTTTTGAGAGACATATAAACATGAGACTGATGACTTTACATCCAGTGTTTGTTAGCCTACAATCTTCTGTTGTGCACTAAAGAAGCACGTATCAGTTACCACACATCTGGCTGATCGTCTGAATCTGGAATCAGTGATCAATCACAGAAGTTACATTTGTAACAGAATTGTTACTAGTGTTATGTTTAATAGCAACAGCCCATGCATTAACACTTCTAATTAAAGTGGACCTTCAGCACTTCTATGTGTAATCATATATAAAGCACTTTAATGTA

Function

NR:

description
PREDICTED: UPF0505 protein C16orf62 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669166.1 True 4095 mRNA 0.48 30 14834452 14861783

Neighbor

gene id symbol gene type direction distance location
wapl LOC108435041 coding downstream 217830 14565938 ~ 14616622 (-)
grid1 grid1,grid1b,LOC106578986,LOC106589364,LOC103147060 coding downstream 395223 13882457 ~ 14439229 (-)
dnajc9 dnajc9,LOC107684784,LOC107751706 coding downstream 1320214 13508956 ~ 13514238 (-)
LOC103043889 ppp1r9bb,LOC107741705,LOC107684769,LOC107713069,LOC107675672 coding downstream 1413510 13391819 ~ 13420942 (-)
cdh20 cdh20 coding downstream 1449189 13361736 ~ 13385263 (-)
trnal-caa_1 NA coding upstream 89854 14951637 ~ 14951749 (-)
trnal-caa_2 NA coding upstream 90058 14951841 ~ 14951953 (-)
trnal-caa_3 NA coding upstream 90321 14952104 ~ 14952216 (-)
trnal-caa_4 NA coding upstream 90525 14952308 ~ 14952420 (-)
trnal-caa_5 NA coding upstream 90729 14952512 ~ 14952624 (-)
G36428 NA non-coding downstream 56057 14749553 ~ 14778395 (-)
G36417 NA non-coding downstream 129221 14704543 ~ 14705231 (-)
G36396 NA non-coding downstream 264466 14552745 ~ 14569986 (-)
G36339 NA non-coding downstream 803511 13984417 ~ 14030941 (-)
G36331 NA non-coding downstream 985215 13848974 ~ 13849237 (-)
G36542 NA non-coding upstream 286620 15148403 ~ 15149356 (-)
G36550 NA non-coding upstream 338039 15199822 ~ 15200037 (-)
G36632 NA non-coding upstream 520729 15382512 ~ 15454810 (-)
G36629 ki67 non-coding upstream 531228 15393011 ~ 15397037 (-)
G36634 NA non-coding upstream 545677 15407460 ~ 15412008 (-)
c4h10orf88 LOC103041415 other downstream 37240 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 1334275 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 1522927 13307088 ~ 13311525 (-)
G36074 NA other downstream 2122907 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 2762025 12067533 ~ 12072427 (-)
G36677 NA other upstream 885617 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 975322 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 2051787 16913570 ~ 16915285 (-)
G37183 NA other upstream 2154345 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 2185824 17047607 ~ 17062947 (-)

Expression


Co-expression Network