med24 (med24,LOC107660474,LOC107678252)


Basic Information

Item Value
gene id med24
gene name med24,LOC107660474,LOC107678252
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15040534 ~ 15085022 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669169.1
tggaccaatcacagcgcgTGTTACTGTTTCCAGTATGGCGCCGGTGGTAAGCGATTGAATTGAAAAGCAACATTAAATCTAATCTTCAGTCAAAGAATAAAATCAGAATGAAAGTGGTGAACCTGAAGCAGGCCATTCTACAGGCATGGAAGGAGCGCTGGAGCGACTATCAGTGGGCCATCAACATAAAGAAAAACTGCCCCAAAGGCGCCACGTGGGATTACCTCAACCTGGCAGAAGCGTTGTTGGAGCAGGCAATGATCGGACCTTCCCCAAATCCCCTGATCCTTTCCTACTTGAAGTATGCCATCAGTTCTCAGATGGTGTCCTGCTCCAGTGTTCTTACAGCAATCAGCAAGtttgATGACTTCTCCCGAGAACTCTGTGTCAAATCCCTTCTGGAGATCATGGACATGTTCTCTTACTCACTCAGCTGTCAGGGTAAGGCAGAGGAGTGCATCGGCCTGTGCCGAGCTCTGCTGGGCATCGTGGTGTGGCTCCTGCAGGGATGTGCCTGGTACTGCGAGAAGCTGAGAGAACCTGGATTGCTGCCCGCCGGTGAGGCCAGCCTCAGTGCCTGCCAGGAACGTCTGGAAAGCCTTCTGCAGCGGACCAAGAATCGAGCCCTGGTGCACATTGCACGCCTTGAGGAACAGGCCTCCTGGAGCAACGTGGAGCAGGCTTTAATCAAACTGGTGGAGAATCTCAGCAGTTTGAGCAATCAGACGCTGAGCAACAAGCTGGAGGAGTGCATCTCTCTTGTTAAGAGTATTCCTCAGATGGTGTGTATTCAGTGTGACCCTCCAGTGCAGACTACCTTCCCTTCAGTTCACGCATTCATCATGCTGGAGGGGACCATGAACCTGACAGGAGAGACCCAGCCACTGGTGGAACAGCTAATGATGATAAAGAGGATGCAGCGTATTCCTGCTCCTATATTTGTTCTGGAGGTCTGGAAGGCCTGCTTCACTGGACTCATCGAATCCCCTGAGGGAACGGAGGAGCTCAAATGGACCGCCTTCACCTTCCTCAAGATTCCCCAGGTTTTGCTGAGGCTGAAGAAGTATCCACAGGGAGACAAGGACTTCATGGATGACATGAACATGGCTTTTGAGTTTCTGCTGAAGCTCACGCCACTTCTGGACAAAGCAGATCAGAGATGCAACTGTGACTGCCTGAGTCTGCTGCTTCAGGAGTGTAATAAACTGGGCCTGCTGTCCGAGTCCAACACAGCTAACCTTACTGCCAAAAGGTCCGGAGGCTCATACCCCGCGTAGGGGTATGCCCCGAAGCTGAAGACAGCAGAGAATGCAAACATCCAGCCCAACCCAGGCCTCATACTGCGGGCAGAGCCCACCGTCACTAACATACTAAAGACCGTAGATGCGGATCACTCAAAGAGCCCAGAGGGGTTGCTGGGAGTGTTGGGGCACATGCTGTCGGGGAAGAGTCTGGACCTTCTCCTGGCGGCTGCTGCGGCCACGGGAAAGCTCAAGTCTTTTGCTCGCAAGTTTATTAAgttgAATGAGTTCCCCAAACAGATCCCTGGTGAAGGATCCAAAGCTGCATCTGTGAGGGCGCTTCTGTTCGACATCTCCTTCCTCATGCTCTGCCATGTCGTCCAGACATACGGATCAGAGGTCATCCTTTCGGAACCCAGTCCATCAGGGGAGACGCCATTTTTTGAGACGTGGCTGCAGATGTGCATGCCGGAAGAAGGGAAAACTCTGAACCCGGATCACCCCTGCTTCCGGCCTGAATCGGGCAAAGTGGAGAGCCTCGTGGCCCTTCTGAACACTTCCTCTGAGATGAAGTTGGTTCAGATGAAATGGCATGAGATCTGCCTCACCACACCAGCCGCCATCCTGGAGGTTCTGAATGCGTGGGAGAACGGAGTTCTGTCTGTAGAGGCTGTGCAGAAGATCACAGATAATATCAAAGGAAAGGTGTGCAGTATGGCCATCTGTGCCGTGGCCTGGTTGGTGGCTCACGTTCGGATGTTGGGATTGGACGAGAGAGAGAAGCCTCAGACTATGATTCGGCAGCTCATGACTCCTCTGTACGGAGAAAACACCCTGCAGTTTTACAACGAACGCGTGGTCATTATGAGCTCCATCTTGGAGCACATGTGCGCAGACGTGTTCCAACAGACTGGTGTGTCGCTGCGTCCAGCCGTAGAAGGTCAGGAGCCAATCCCCTACCGGAGCCTCCTGCCTGCCCGCCAGCCCATCCGTCAGGCCCTGCAGGCTCAGTTCCGCCAGGTTCTGGATAAAGGTTGGGTGGATTCACGCACACTGCACCTGCTTGAAAGTCTGATGCACATGGGTGGAGTCTTCTGGTTCACCAACAACCTTGTAAAGGAGCTACTAAAAGAGACTCGTAAGGAGTGGGCGATTCGTGTGGTGGAACTCCTCTACAGTATATTCTGTCTGGACCTGCAGCAGGTCACTCTCACATTGCTTGGTCACATTCTGCCAAACTTGCTAACCGACCCCGCGCACTGGCACATCCTGGCAGACCCACCGGGGAGAGCCCTCGCCAAGTTGTCTGTGTGGTGTGCTCTCAGCTCCTACTCGTCTCATCATAAAGTCCACACCTTGGCTCGGCAGCGCAAAAGACAACGAGAAGATATCGAGGACTATAGCAGCCTGTTTCCCCTGGATGATACGCAGCCCTCCAAGCTGATGCGTCTGCTGAGCTCCAACGAGGATGAGCCAGTGGTGTTATCCAGTCCAGGTGACCGGACGATGAGTAGCTCACTTTCAGCCTCGCAGCTTCACACTGTCAACATGAGAGATCCCCTCAACCGTGTTCTAGCTAATCTGTTCCTGCTGATCTCCTCCATCCTGGGGTCCAAGTCTGCGGGTCCTCACACTCAGTTCGTGCAGAGCTTCGTGgaagagtgtgtggagtgttctGAGCAGGGCAGCCGCGGCAGCATTCTGCAATTCATGCCTTTCACTATGGTTTCTGAGCTGATGAAGCTGCACGCTTTGGCTAAACCTAAAGTCGTCCTGTCCATCACGGATCTGACTCTTCCTCTGGGCAGGAGAGTGGCAGCCAAAGCTATTGCTGCTTTGTAGtatggatacacacacacacacacacacacacacacacacacacacatacacatactagCCTTCTTCATTTCTTCAGTGAGCGCAACCTTCCTGTTTAATCCCAGACAGGCATCTCTACGCACCCATTTAACATGCACTCAGCTGCGTCCAGCATTTGGTGGAACGGCCTGTAAATCAGATcagataaaacagagataaagacaCACATGTTCAGTGGGAGTGGATCTTACCTGCACTTGCcttaaagcaattttttttggCTTATATCCAGCGTTCCTATGAAATGCAAGAGGGGTTTCCagtaaagcgttttttttttttttcatccccaATGACGGTGCATAAAATGTTAATTCTCAGTTGGTTCTGATTTGAAGGATGTGGTCGCACTTGTGAAATGAGCTgcgtttcatgtttttttggcaACAGCAGGTGTTTACCGTCAACCAGAAGAAGAAACTGCAAACTGTTGGAtttttgtatataatatttctgtttttgtacTCAATAAATCAtaagaaat

Function

symbol description
med24 Predicted to enable transcription coregulator activity. Acts upstream of or within interstitial cell of Cajal differentiation; nervous system development; and thymus development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Is expressed in brain; gut; and head. Used to study Hirschsprung's disease; intestinal disease; and neuropathy. Orthologous to human MED24 (mediator complex subunit 24).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0046549 retinal cone cell development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048538 thymus development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15167 MED24; mediator of RNA polymerase II transcription subunit 24

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669169.1 True 3606 mRNA 0.51 26 15040534 15085022

Neighbor

gene id symbol gene type direction distance location
trnal-caa_19 NA coding downstream 83777 14956645 ~ 14956757 (-)
trnal-caa_18 NA coding downstream 84184 14956238 ~ 14956350 (-)
trnal-caa_17 NA coding downstream 84590 14955832 ~ 14955944 (-)
trnal-caa_16 NA coding downstream 84996 14955426 ~ 14955538 (-)
trnal-cag_9 NA coding downstream 85197 14955227 ~ 14955337 (-)
LOC103031644 LOC108424598 coding upstream 9582 15094604 ~ 15115112 (-)
psmc5 psmc5,LOC107745657,LOC107753303 coding upstream 456078 15541100 ~ 15547570 (-)
smarcd2 smarcd2,LOC107569192,LOC107684754 coding upstream 467569 15552591 ~ 15565917 (-)
LOC103026640 si:dkeyp-118b1.2,LOC103026640,LOC108410802,LOC107694074,LOC107745658,LOC108273584,LOC105909120,LOC107684755 coding upstream 487758 15572780 ~ 15580758 (-)
LOC103026344 LOC108410807,LOC106579091,LOC107569191,LOC105909101,LOC105006181 coding upstream 497603 15582625 ~ 15611422 (-)
G36477 NA non-coding downstream 163456 14832969 ~ 14877078 (-)
G36428 NA non-coding downstream 262139 14749553 ~ 14778395 (-)
G36417 NA non-coding downstream 335303 14704543 ~ 14705231 (-)
G36396 NA non-coding downstream 470548 14552745 ~ 14569986 (-)
G36339 NA non-coding downstream 1009593 13984417 ~ 14030941 (-)
G36542 NA non-coding upstream 63381 15148403 ~ 15149356 (-)
G36550 NA non-coding upstream 114800 15199822 ~ 15200037 (-)
G36632 NA non-coding upstream 297490 15382512 ~ 15454810 (-)
G36629 ki67 non-coding upstream 307989 15393011 ~ 15397037 (-)
G36634 NA non-coding upstream 322438 15407460 ~ 15412008 (-)
c4h10orf88 LOC103041415 other downstream 243322 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 1540357 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 1729009 13307088 ~ 13311525 (-)
G36074 NA other downstream 2328989 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 2968107 12067533 ~ 12072427 (-)
G36677 NA other upstream 662378 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 752083 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 1828548 16913570 ~ 16915285 (-)
G37183 NA other upstream 1931106 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 1962585 17047607 ~ 17062947 (-)

Expression


Co-expression Network