LOC103031644 (LOC108424598)


Basic Information

Item Value
gene id LOC103031644
gene name LOC108424598
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15094604 ~ 15115112 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669170.1
catcCCATTCATTTCATCATTGCTCTTGGGTGCAGGCAGTGCTGTCTGGAACACTTGTCCCAGgcagtgtgtgtacatgtgtaaatGTCAGCCGTGAGAGGAGCAGCATGAGCCCCTATCCCATCAGCTGAGGCTCCAGATCCAAGatTTGTGTGGTCATGTCGTCCACCCCTCTGGCCGAGACGGAAGAAGACGTGTTTGACCTGACAGAAGCAGTACCCGAGACAGAGCGACTGGACAGCAGTCTACAAAAAGCAAAAGCCCAGCTGTCAGTCAAAACCAGAAGGCACCGGCCCTCCAGATCCCGCCTGAGAGACAGCCTGAGCTCGACAGAAGGAGATGATAGTCTCGATGGAAAGAGCTTCAGCAGCCCTCCCCACAGCATGTACTCTCCTCTCCATGCCTCCCTTCGCTGCTCCTCACCATCCACTGACCTCCAGCTCTCCTGCTCTTCTTCTCCTGCATGGAGAGACAGAGCCTTCACCTTAGATCCCTTCTCTGAGACTCCAGAGCGGAAAGGCCGGTACAAACATTTGTTGGACACCTCCTCTCAGGAGACCCTGCTAGTGACGCCCCCCAACTTTAACGTCAAACCCTGCAGCAGGTCAGAAACCTCGTCTCCGGCTCACCTGCGACAGGAGGACCATGTCCGCCTGCATGAGGAGGACCAGTCTCTCCTGCGCCAGAGGGAGCACTCTCAAAATGAAGATGACAGCCATGATGTGGGTTCAGATGAGCCGGGCAGCCCAACAGTACTGCTAGACAAGAAGACCAGGAGGCGTTTCCTTGATCTGGGGGTCACTTTGCGCCGCACATACGGGAAGGTCAGGAAGGACAGAGCCAACAGGCTATCAGCACAGAGTCGagagccagagagagcagagagccGGTCTACGCGTTCCTCCGGACCTCCGTTTGTGCCTTTCTCCTGGTTCAGTGACAGACTCAGAGGATCCAGTTCCCCCAAGTCGTCCAGCCAGTCTCCAACCAAGTCTCTGGCTAAGGGTTCCAGTCAGGACCAAGAGCTGGACGCATCCACTGGTCTCCTGGAAACACGCAGCAGGTCCAGCAAACCCGAGTCCTCCCAGCCGTACCGCAGCCTGTCTGAACACTCAGATGAGGGGTGTGACAGCAGAGGAGCAGACCCCTGCTATGTGAGGAAGAAAGCCATCCTGCCGTTTTCAACAAGTGGACGAGACAGGACAGAAAAGCAGAATGGAATGCACAGCAATAAGGACAGCGATCAAAATGGAGATGGACAAAAATTACTGACCACTTGATGGCAGTGTGCCCCTGTGCTTCAGGGCTCAGCACAACAAGCCAAACAGCTTAATCCTTCTCCTCAGTTGTTTTTCAGGTGTAAATACTGTAGTTGTAGGAATTATGTAATATGCAGACTTTTAGGTCTGTATGATTGAATGATTGCCTAATAaacaatttttggaaaaataa
>XM_022669171.1
CTCCAGGTTTGTCCCAGTCTgtctgccttcattgagttcaTTGGGATTCTCCCTCAGTTTGTTCAatTTGTGTGGTCATGTCGTCCACCCCTCTGGCCGAGACGGAAGAAGACGTGTTTGACCTGACAGAAGCAGTACCCGAGACAGAGCGACTGGACAGCAGTCTACAAAAAGCAAAAGCCCAGCTGTCAGTCAAAACCAGAAGGCACCGGCCCTCCAGATCCCGCCTGAGAGACAGCCTGAGCTCGACAGAAGGAGATGATAGTCTCGATGGAAAGAGCTTCAGCAGCCCTCCCCACAGCATGTACTCTCCTCTCCATGCCTCCCTTCGCTGCTCCTCACCATCCACTGACCTCCAGCTCTCCTGCTCTTCTTCTCCTGCATGGAGAGACAGAGCCTTCACCTTAGATCCCTTCTCTGAGACTCCAGAGCGGAAAGGCCGGTACAAACATTTGTTGGACACCTCCTCTCAGGAGACCCTGCTAGTGACGCCCCCCAACTTTAACGTCAAACCCTGCAGCAGGTCAGAAACCTCGTCTCCGGCTCACCTGCGACAGGAGGACCATGTCCGCCTGCATGAGGAGGACCAGTCTCTCCTGCGCCAGAGGGAGCACTCTCAAAATGAAGATGACAGCCATGATGTGGGTTCAGATGAGCCGGGCAGCCCAACAGTACTGCTAGACAAGAAGACCAGGAGGCGTTTCCTTGATCTGGGGGTCACTTTGCGCCGCACATACGGGAAGGTCAGGAAGGACAGAGCCAACAGGCTATCAGCACAGAGTCGagagccagagagagcagagagccGGTCTACGCGTTCCTCCGGACCTCCGTTTGTGCCTTTCTCCTGGTTCAGTGACAGACTCAGAGGATCCAGTTCCCCCAAGTCGTCCAGCCAGTCTCCAACCAAGTCTCTGGCTAAGGGTTCCAGTCAGGACCAAGAGCTGGACGCATCCACTGGTCTCCTGGAAACACGCAGCAGGTCCAGCAAACCCGAGTCCTCCCAGCCGTACCGCAGCCTGTCTGAACACTCAGATGAGGGGTGTGACAGCAGAGGAGCAGACCCCTGCTATGTGAGGAAGAAAGCCATCCTGCCGTTTTCAACAAGTGGACGAGACAGGACAGAAAAGCAGAATGGAATGCACAGCAATAAGGACAGCGATCAAAATGGAGATGGACAAAAATTACTGACCACTTGATGGCAGTGTGCCCCTGTGCTTCAGGGCTCAGCACAACAAGCCAAACAGCTTAATCCTTCTCCTCAGTTGTTTTTCAGGTGTAAATACTGTAGTTGTAGGAATTATGTAATATGCAGACTTTTAGGTCTGTATGATTGAATGATTGCCTAATAaacaatttttggaaaaataa

Function

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 14-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669170.1 True 1452 mRNA 0.53 10 15094604 15115112
XM_022669171.1 False 1371 mRNA 0.53 9 15094604 15111090

Neighbor

gene id symbol gene type direction distance location
med24 med24,LOC107660474,LOC107678252 coding downstream 9582 15040534 ~ 15085022 (-)
trnal-caa_19 NA coding downstream 137847 14956645 ~ 14956757 (-)
trnal-caa_18 NA coding downstream 138254 14956238 ~ 14956350 (-)
trnal-caa_17 NA coding downstream 138660 14955832 ~ 14955944 (-)
trnal-caa_16 NA coding downstream 139066 14955426 ~ 14955538 (-)
psmc5 psmc5,LOC107745657,LOC107753303 coding upstream 425988 15541100 ~ 15547570 (-)
smarcd2 smarcd2,LOC107569192,LOC107684754 coding upstream 437479 15552591 ~ 15565917 (-)
LOC103026640 si:dkeyp-118b1.2,LOC103026640,LOC108410802,LOC107694074,LOC107745658,LOC108273584,LOC105909120,LOC107684755 coding upstream 457668 15572780 ~ 15580758 (-)
LOC103026344 LOC108410807,LOC106579091,LOC107569191,LOC105909101,LOC105006181 coding upstream 467513 15582625 ~ 15611422 (-)
LOC103025516 NA coding upstream 608147 15723259 ~ 15737075 (-)
G36477 NA non-coding downstream 217526 14832969 ~ 14877078 (-)
G36428 NA non-coding downstream 316209 14749553 ~ 14778395 (-)
G36417 NA non-coding downstream 389373 14704543 ~ 14705231 (-)
G36396 NA non-coding downstream 524618 14552745 ~ 14569986 (-)
G36339 NA non-coding downstream 1063663 13984417 ~ 14030941 (-)
G36542 NA non-coding upstream 33291 15148403 ~ 15149356 (-)
G36550 NA non-coding upstream 84710 15199822 ~ 15200037 (-)
G36632 NA non-coding upstream 267400 15382512 ~ 15454810 (-)
G36629 ki67 non-coding upstream 277899 15393011 ~ 15397037 (-)
G36634 NA non-coding upstream 292348 15407460 ~ 15412008 (-)
c4h10orf88 LOC103041415 other downstream 297392 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 1594427 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 1783079 13307088 ~ 13311525 (-)
G36074 NA other downstream 2383059 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 3022177 12067533 ~ 12072427 (-)
G36677 NA other upstream 632288 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 721993 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 1798458 16913570 ~ 16915285 (-)
G37183 NA other upstream 1901016 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 1932495 17047607 ~ 17062947 (-)

Expression


Co-expression Network