smarcd2 (smarcd2,LOC107569192,LOC107684754)


Basic Information

Item Value
gene id smarcd2
gene name smarcd2,LOC107569192,LOC107684754
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15552591 ~ 15565917 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669178.1
tgtgtgtgtgcgtggttgCAGCGTCCCAGCATGCCGCCCAGTCGAAACATGCCCATGGGTGGGATGGGGCCAATGGGATCCCCCATGCCTGGGCCATCCTATGGTGGCAGCATGCGCCCCGGCATGCCTCAGGCAGCGCTGGACCCGGTCCGCAAGAGACTGCTCCATCAGCAGGCAGGGGGGCTGGTGGGGCCTCGGAGAGGGATTAAAAGACGCAAGATGGCTGACAAAGTCCTTCCACAGAGGATTCGAGATCTGGTTCCAGAGTCTCAGGCTTATATGGATCTCTTGGCTTTTGAGAGAAAGCTGGATCAGACCATTGCTCGCAAGCGCATGGAGATCCAAGAGGCCATTAAGAAGCCCATCACGcaaaAGCGCAAGCTGAGGATCTACATATCCAACACCTGCACACCTGCCAAGCCAGAGGGAGAAGAGGCTGAGAAAGTGGCATCGTGGGAACTTAGAGTGGAGGGCAAACTCCTGGATGATCCTGGGAAGCAGAAGAGAAAGTTCTCATCCTTTTTCAAGAGCTTGGTCATTGAACTCGATAAGGAACTGTATGGTCCAGACAATCACCTGGTAGAGtGGCACAGGATGCCTACCACTCAGGAGACGGATGGTTTTCAGGTGAAAAGACCTGGAGACGTCAGTGTGAAGTGCACCCTCCTTCTAATGCTGGACCACCAGCCTCCACAGTATAAGCTGGATCCACGACTGGCTCGGCTTCTGGGCGTCCACACCCAGACTAGATCCAGCATAATGCAGGCTCTCTGGCTTTATATCAAAAACAACAAGCTACAGGACAGCCACGAAAAAGAGTACATCAACTGCAACCGCTACTTTAGACAGATTTTTGCATGCCACAGAATGAGGTTCTCGGAGATCCCCATGAAGCTGGCTGGACTCCTGCAGCACCCCGACCCCATCGTCATCAATCATGTCATCAGCAGTGTGGATCCTAACGACCAGAAAAAGACAGCTTGCTTTGATATTGATGTGGAAGTGGATGATCCACTGAAGAGCCAGATGACCAGCTTCCTCTCATCTACTACTAACCAACAAGAAATTGCTGCCCTGGAAATGAAGATCCATGAGACCATCGAGTCCATAAATCAGCTGAAGACCCAAAGGGACTTCATGTTGAGCTTCAGCAACAGTCCGCAGGACTTCATCCAGGACTGGCTCAAGTCTCAAAGCCGAGACCTCAAGCTGATGACAGACACTGCCGGGAACcctgaggaggagaggaggagcgaGTTCTACCAGGCTCCATGGGTCCAGGAGGCTGTGGGCCGTTACGTATTCTCCAAGGTCCATCAGAGGAGGCAGGAGCTGGAGCAGGTACTGGGCATTCGTCTTACCTAAGCCTGAGGCTGCGGGTAGGGAACATCTGAGCGCTTGTCTAGGAGCTGGTGTTTGCATCCTAATCAACAGGATAAGAAGGGGGAATCACTAGATCACTGCTGGATCTTGCAGACTTCTCCTCGGCCATTCAGAAAGAGGTCCAGCTGTATGGCGCGAAAAGTCCTACTAGAAATGCTGCAATGGTTCAACTGgaatgttgtttttctttctttaaaaaaaatcatacatatcTTTTTAACGTAATGTGTAACAGGTTGAATTTACACTTACATTTGTGcccttaatttttttgtaatttttttcttgtcATAGATGGCAGACAGTATTTTGCTATAGCTCCTTTGTTAGATCATATGTGCTTTCTAAAAGCATTTGCATTGCCTTTGGAATTATTCaagtttgccttttttttttttttttttgaaagagcTTCTGAACATAGCAGCTCTGCAAAGCCATAACTGcctattttttaatcttttgtatatttttcctGCAAGAAGAACAATGTTTTACCTAGACAGAGGCTTAGAATAAAGTAGTGTAGAGAGTTTTACATAGAATGTAGACTTTTTTGTAGATGCAGGAATCCATCTCCGTCGGACTCTCAGGAAAATGATGCTGATCTGCGTTGAAGAGCCATTGTTCGGTCCACTCAAGCTCGATGGAGACGCCAGCTGTTTTGCTTCAGTTGGGTTAAGGTCCCCCACCCCTTGCCTCGTTCTCCTCAGTCAGTGTTTACAGACTGTTTTGTGTTGTTAGGGTGTTTTACTGTGACTGTGCCAGACATAGCTGTGAGTGTGTTATACTTGCTTTGTACCATTGAGTAGGATTCAAAGCCATTTTAAAGCCATTTTGCAGTTTGATAATTGATGCCGAGATACCGCAATTCTGATTCCTTCACTCTTCAAAGAATAGTTTGGCAGAAAATCACATTTCTACAGTTTCCCACATACTCCAAATGTAGTCTATCAGCCAAGACTGTGTGCTTCTCTCATTTTGCACTGTAGCTACAAGAGTAATGATTCTGTCAAGCCATACAAGTGGTTGCAAATTACAGGAATAATTGTGTTTGGCCTAATTCAGTACATTTTTATTGATAACAGAATGTTAAAAAGTGTTGGAGAAAGTGTCTCTTAGAGAAAGTTTCTATAATTTAACTTATTTCTATAATCCAATAATGCAGGGTAGTCTTAACCACATCACATTTAAGTTTAAGTTATGTTAGAAATACCAAATCCTTTAAACAGAAACATTAAGcattattcactattattcattCAAATTATAAATGtagcatttatgttttttatgagCCAGTCTTAATTACGATAACACttcattttgat

Function

symbol description
smarcd2 Predicted to enable transcription coregulator activity. Acts upstream of or within hematopoietic progenitor cell differentiation and neutrophil differentiation. Predicted to be part of SWI/SNF complex. Predicted to be active in nucleus. Orthologous to human SMARCD2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2).

NR:

description
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2

GO: NA

KEGG:

id description
K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669178.1 True 2714 mRNA 0.45 12 15552591 15565917

Neighbor

gene id symbol gene type direction distance location
psmc5 psmc5,LOC107745657,LOC107753303 coding downstream 5021 15541100 ~ 15547570 (-)
LOC103031644 LOC108424598 coding downstream 437479 15094604 ~ 15115112 (-)
med24 med24,LOC107660474,LOC107678252 coding downstream 467569 15040534 ~ 15085022 (-)
trnal-caa_19 NA coding downstream 595834 14956645 ~ 14956757 (-)
trnal-caa_18 NA coding downstream 596241 14956238 ~ 14956350 (-)
LOC103026640 si:dkeyp-118b1.2,LOC103026640,LOC108410802,LOC107694074,LOC107745658,LOC108273584,LOC105909120,LOC107684755 coding upstream 6863 15572780 ~ 15580758 (-)
LOC103026344 LOC108410807,LOC106579091,LOC107569191,LOC105909101,LOC105006181 coding upstream 16708 15582625 ~ 15611422 (-)
LOC103025516 NA coding upstream 157342 15723259 ~ 15737075 (-)
LOC103024156 NA coding upstream 180367 15746284 ~ 15769469 (-)
LOC111192378 NA coding upstream 192473 15758390 ~ 15758863 (-)
G36657 NA non-coding downstream 3512 15548879 ~ 15549079 (-)
LOC111192377 NA non-coding downstream 25294 15514858 ~ 15527297 (-)
G36632 NA non-coding downstream 97781 15382512 ~ 15454810 (-)
G36634 NA non-coding downstream 140583 15407460 ~ 15412008 (-)
G36629 ki67 non-coding downstream 155554 15393011 ~ 15397037 (-)
G36664 NA non-coding upstream 42174 15608091 ~ 15679306 (-)
G36678 NA non-coding upstream 189839 15755756 ~ 15760772 (-)
LOC111192406 NA non-coding upstream 225180 15791097 ~ 15795369 (-)
G36681 NA non-coding upstream 235113 15801030 ~ 15801264 (-)
LOC111192407 NA non-coding upstream 253399 15819316 ~ 15835522 (-)
c4h10orf88 LOC103041415 other downstream 755379 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 2052414 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 2241066 13307088 ~ 13311525 (-)
G36074 NA other downstream 2841046 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 3480164 12067533 ~ 12072427 (-)
G36677 NA other upstream 181483 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 271188 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 1347653 16913570 ~ 16915285 (-)
G37183 NA other upstream 1450211 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 1481690 17047607 ~ 17062947 (-)

Expression


Co-expression Network