LOC111192380


Basic Information

Item Value
gene id LOC111192380
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17442641 ~ 17466671 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669227.1
TTGagaaatcagccaatcacattttgGTGATCTGCAGTGGGAGTGATTGGTTGAATAAGAAAATTGTCCTTCATTTTTGGGaCACCACATCTGGTCTGAAGCTCACACCTTCTGGCAACAGCCTGGAAAACTACTGGGAAAGCATCTTAAGCATCAGCCACCCTGCATCTTTAGTACCTCTGTTCTTTTAGCTGCAGCAAAACCAATTAATCCACTTCAAGATGTGGCTGCTGGTGTTTCTGGTGTGGTTCCTGAGCTGGGCAGGTGGAATGTACTGGTATTTCTGTGGCAGACCGAGCCCTTTCTCAGAGGACTGTGTAAGACCTGCAGGACCAATGGAGCTTAACCAGAAGAAAAGAGACAAGGTTCTGAAGCAAGGCTTTGCCAAGAAGAAAGTGGCCAAGGATTTGGATGCAATCGTGATTGGCAGCGGGGTCGGTGGGATGGCAGCAGCGGCTACAATTGCCAAAACTGGCAAGAAAGTTCTTGTGTTGGAGCAACACGACCAGGCTGGAGGCTGCTGCCACACCTTTATCGATAAAGGTTTCGAGTTTGATGTTGGGCTTCATTACGTTGGTCAGTTGCATGAGAACAGtctgtttaagatcatttttGACCAGATCACAGAAGGCCAGCTGGAGTTTGCAGAGCTCGACCAGCATTTTGACACGGTTGTGATTGGCACAGGAAAGGAAACTAGGGAATACACTATCTGCTCGGGCAAAACTGAAATGGAGGAACATCTTAAAAAGCAGTTTCCTGATGACACCGAAGCCATTGAGGAGTTCTTTAAGATCATGAAGTTGTCAGCTAGGAAGACTCCCTACTTGGCTGCACTGAAGCTGATTCCAGAGTGGCTGGCCCTATTCCTCGTGAGGAGTGGTCTTGCCAACCTCTATTCCTCTGCCTTCCAGCTGTTAAGCATGAATGCTACAGATCTGGTCGAGAAACTGACCTCCAACAAGGACCTCCAAGTTATCTTTGCATACTACTTCTATGgtACTCCTCCAAGAGATTCCAGCAGCCTGATCAACGCCCTGATGCTGCATCACTTCAAGCGTGGAGCATACTACCCAAAAGGAGGTGCTAGTGAGATCCCATACCACATCACTAAGGTCATCCAGAAGTATGGAGGGAACGTTCTGGTTCGTGCTCCTGTCAGTCAAATCCTGGTGGACAGTCAAGGAGCTGCATATGGCGTTGCTGTCAAAAAAGGTAAAGAAGAAATTGAAGTTCGGGCTCCTGTTGTCATCTCCAACTGTGGCATCTTCAACACCTTCAAGAGACTCCTGCCCCCAGAGATACAAGTCAAACCAGAAATCCAGAAGCGTCTGGATATGGTAAGACCTGGAAAAGGATCCCTTTTGCTCTTCTCTGGATTTGACGGCACAGCAGAAGAGCTGGGCATCAGCGCAGTCAGCAGATGGGTCTTTAAGAATAACGACATGGATGCCATGATGGATGATTTCTTCAGCTTGGGAAAGGAAGAGGCTCCAGAAAACATTCCCATGATGTTTGTGACTTTCCCTTCCCCCAAAGACCCCATGTCACAGATTCGTCATCCAGgtaaatcCTGCATGACTATTCTGACTATGGTCAATTACGAGTGGTTTGAGGAGTGGAAGGACACTCCAGTGAAAAGGCGAGGAGCTGACTATGTAGAATACAAGAACAGATTTGCCAAACATCTCTTTGACTGGGCCTGTGTCTTATACCCTAAACTCAGAGAAAAGcTGGTCTTCCAGGACGTAGCTACTCCACTGACCAACAATTTCTACCTCGGGTCGTACCGTGGAGCCATTTACTCAACTGATCACAACTTGGATCGCTATCACATGGATATAATGGCCAAGAACCGCTGTGAAACACCTGTCAAAAATCTCTATGTATCAGgtCAGGACATGTTTAGCTGTGGGATCATTGGTGCACTACACGGTGGGCTCATGTGCGCCTCTAGGGTGCTTGGACGCATGGTTTACATCGACCTCTTGGTGCTTAAGAAGAAGCTGAAGAAGAGGAAGGCTTTGGAACTGGCTGCACTGACTGAGAAGAAGCTGCAGTGAGACTATATCTGAGTGACCCAATAGAAGTGGTTCACCAAGCCTATGTTACGTTTTTGCTTTAAAGAGTCTGGGAAATTAAAAGGGGAACTTGTTGATTAGTCAGTGTTCTACCTTTACAAGACATGTGTAAcgtgtatatataaaattagttgtacatatattgtattcacattgttgtttttttcttagcaTATAAAGCAGCAAATACTTTTCTTGATCATATTATATTCTGAATGAAGGTTAATTTCTAGG
>XM_022669228.1
TTCAGCACTGGGACTGGGTCTAACTCCAGACAGGAAAACCTCAGAAACGCTGTTGTTCTGGAGaCACCACATCTGGTCTGAAGCTCACACCTTCTGGCAACAGCCTGGAAAACTACTGGGAAAGCATCTTAAGCATCAGCCACCCTGCATCTTTAGTACCTCTGTTCTTTTAGCTGCAGCAAAACCAATTAATCCACTTCAAGATGTGGCTGCTGGTGTTTCTGGTGTGGTTCCTGAGCTGGGCAGGTGGAATGTACTGGTATTTCTGTGGCAGACCGAGCCCTTTCTCAGAGGACTGTGTAAGACCTGCAGGACCAATGGAGCTTAACCAGAAGAAAAGAGACAAGGTTCTGAAGCAAGGCTTTGCCAAGAAGAAAGTGGCCAAGGATTTGGATGCAATCGTGATTGGCAGCGGGGTCGGTGGGATGGCAGCAGCGGCTACAATTGCCAAAACTGGCAAGAAAGTTCTTGTGTTGGAGCAACACGACCAGGCTGGAGGCTGCTGCCACACCTTTATCGATAAAGGTTTCGAGTTTGATGTTGGGCTTCATTACGTTGGTCAGTTGCATGAGAACAGtctgtttaagatcatttttGACCAGATCACAGAAGGCCAGCTGGAGTTTGCAGAGCTCGACCAGCATTTTGACACGGTTGTGATTGGCACAGGAAAGGAAACTAGGGAATACACTATCTGCTCGGGCAAAACTGAAATGGAGGAACATCTTAAAAAGCAGTTTCCTGATGACACCGAAGCCATTGAGGAGTTCTTTAAGATCATGAAGTTGTCAGCTAGGAAGACTCCCTACTTGGCTGCACTGAAGCTGATTCCAGAGTGGCTGGCCCTATTCCTCGTGAGGAGTGGTCTTGCCAACCTCTATTCCTCTGCCTTCCAGCTGTTAAGCATGAATGCTACAGATCTGGTCGAGAAACTGACCTCCAACAAGGACCTCCAAGTTATCTTTGCATACTACTTCTATGgtACTCCTCCAAGAGATTCCAGCAGCCTGATCAACGCCCTGATGCTGCATCACTTCAAGCGTGGAGCATACTACCCAAAAGGAGGTGCTAGTGAGATCCCATACCACATCACTAAGGTCATCCAGAAGTATGGAGGGAACGTTCTGGTTCGTGCTCCTGTCAGTCAAATCCTGGTGGACAGTCAAGGAGCTGCATATGGCGTTGCTGTCAAAAAAGGTAAAGAAGAAATTGAAGTTCGGGCTCCTGTTGTCATCTCCAACTGTGGCATCTTCAACACCTTCAAGAGACTCCTGCCCCCAGAGATACAAGTCAAACCAGAAATCCAGAAGCGTCTGGATATGGTAAGACCTGGAAAAGGATCCCTTTTGCTCTTCTCTGGATTTGACGGCACAGCAGAAGAGCTGGGCATCAGCGCAGTCAGCAGATGGGTCTTTAAGAATAACGACATGGATGCCATGATGGATGATTTCTTCAGCTTGGGAAAGGAAGAGGCTCCAGAAAACATTCCCATGATGTTTGTGACTTTCCCTTCCCCCAAAGACCCCATGTCACAGATTCGTCATCCAGgtaaatcCTGCATGACTATTCTGACTATGGTCAATTACGAGTGGTTTGAGGAGTGGAAGGACACTCCAGTGAAAAGGCGAGGAGCTGACTATGTAGAATACAAGAACAGATTTGCCAAACATCTCTTTGACTGGGCCTGTGTCTTATACCCTAAACTCAGAGAAAAGcTGGTCTTCCAGGACGTAGCTACTCCACTGACCAACAATTTCTACCTCGGGTCGTACCGTGGAGCCATTTACTCAACTGATCACAACTTGGATCGCTATCACATGGATATAATGGCCAAGAACCGCTGTGAAACACCTGTCAAAAATCTCTATGTATCAGgtCAGGACATGTTTAGCTGTGGGATCATTGGTGCACTACACGGTGGGCTCATGTGCGCCTCTAGGGTGCTTGGACGCATGGTTTACATCGACCTCTTGGTGCTTAAGAAGAAGCTGAAGAAGAGGAAGGCTTTGGAACTGGCTGCACTGACTGAGAAGAAGCTGCAGTGAGACTATATCTGAGTGACCCAATAGAAGTGGTTCACCAAGCCTATGTTACGTTTTTGCTTTAAAGAGTCTGGGAAATTAAAAGGGGAACTTGTTGATTAGTCAGTGTTCTACCTTTACAAGACATGTGTAAcgtgtatatataaaattagttgtacatatattgtattcacattgttgtttttttcttagcaTATAAAGCAGCAAATACTTTTCTTGATCATATTATATTCTGAATGAAGGTTAATTTCTAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669227.1 True 2315 mRNA 0.46 12 17442641 17465758
XM_022669228.1 False 2297 mRNA 0.46 12 17442641 17466671

Neighbor

gene id symbol gene type direction distance location
LOC111192420 NA coding downstream 4149 17431006 ~ 17438492 (-)
rsl1d1 NA coding downstream 20846 17415075 ~ 17421795 (-)
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding downstream 116726 17319206 ~ 17325915 (-)
LOC103027309 NA coding downstream 153809 17273373 ~ 17288832 (-)
LOC103028243 LOC108431941,LOC107584177 coding downstream 210502 17213596 ~ 17232139 (-)
LOC103024821 LOC108425935 coding upstream 33798 17500469 ~ 17504817 (-)
lsm12 lsm12,LOC107708984,LOC107693683,LOC107562026 coding upstream 43289 17509960 ~ 17517710 (-)
wnk4 NA coding upstream 244329 17711000 ~ 17784278 (-)
LOC103047174 fam57b,fam57bb,LOC108274141,LOC106583943,LOC107578766,LOC106579402 coding upstream 337063 17803734 ~ 17820280 (-)
maz maz coding upstream 356087 17822758 ~ 17836906 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding downstream 52220 17385841 ~ 17390421 (-)
G37254 tnrc6b,LOC107690060 non-coding downstream 105319 17335591 ~ 17337322 (-)
G37237 tnrc6b non-coding downstream 115045 17241176 ~ 17327596 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding downstream 195188 17241720 ~ 17247453 (-)
G37217 NA non-coding downstream 320440 17121775 ~ 17122201 (-)
G37298 tmem101,LOC107720276 non-coding upstream 22214 17488885 ~ 17494415 (-)
G37309 NA non-coding upstream 86901 17553572 ~ 17555922 (-)
G37333 LOC103045739 non-coding upstream 239063 17705734 ~ 17708605 (-)
G37443 NA non-coding upstream 659863 18126534 ~ 18126807 (-)
G37444 NA non-coding upstream 660583 18127254 ~ 18127560 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other downstream 60908 17374184 ~ 17381733 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 258214 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 379694 17047607 ~ 17062947 (-)
G37183 NA other downstream 423723 17016128 ~ 17018918 (-)
LOC103043629 LOC108412394 other downstream 527356 16913570 ~ 16915285 (-)
LOC103025140 NA other upstream 7239 17473910 ~ 17476878 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 68032 17534703 ~ 17689384 (-)
cntd1 NA other upstream 225826 17692497 ~ 17705023 (-)
vps25 vps25 other upstream 323280 17789951 ~ 17795988 (-)
LOC103047479 LOC108441156 other upstream 815819 18282490 ~ 18317957 (-)

Expression


Co-expression Network