cabp5 (cabp5a,LOC108425940,LOC107708978,LOC107562016,LOC107693687,LOC105909107)


Basic Information

Item Value
gene id cabp5
gene name cabp5a,LOC108425940,LOC107708978,LOC107562016,LOC107693687,LOC105909107
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17878595 ~ 17888249 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669230.1
cacacgctataCAAACAGCTCACACACTCTCAGCCAGGCAGAGCAATCCGCACACAGGACTGTTCACTTCTGCTggaccacagagagagagaacaaaggaATACTTCATACAAATACAGAATACATCACTGAACTCAGTGAGAAGGATAAAGAGCTGGTCTCTTCTTCAGCCGAGCATCTTCTTCCTCACAGACATGACTGCCTGCATCTTCATACGAGGAGGGAAGATCgacaGAGAGCTGGCAGACGATGAGATTGAAGAGTTGCGAGAGGCGTTTGATGAGTTTGATAAGGATAAGGATGGACTGATCAGCTGTAAGGATCTGGGGAACCTGATGAGGACTATGGGCTACATGCCTACTGAGATGGAGCTGATCGAATTGGGCCAGAACATCAACATGAACCTGGGAGGCCGGGTGGACTTTGAGGACTTTGTGGAGCTGATGACCCCGAAACTCCTGGCTGAGACGGCGGGCATGATCGGCATGAAAGAGCTTAGAGACGCTTTCAGAGAGTTCGACATGGATGGAGATGGAGCCATCACAACAGAAGAGCTGAGGCAAGCTATGGGGAAACTAATGGGAGAAAGCATGACCCGCAGAGAGATCGATACAGTGATCAGAGAGGTGGACAACAACGGAGATGGAACAGTAGACTTTGAAGaattTGTGAAAATGATGTCAAGTTGCTGAGAGAAGCATGCATGGAGACGCTCTGTGGGAtgaacataaatacacacacgaTACGCACACTGTATGCACactgtcaaatataaatataaacacaatctaATTGAGATAGCAAATAAATGCAGATTTATACAGAAAATGTTTCCAAACTATGCAAACcagttaatatttaaatatgtttgcaGTTCTATTGAAACTATTGAATCACATCCAATCACATCAAATTGTATATACGTGGCCAAAATGTTagatgttatatattatattcaataATTTTTGgacaagatttatttattgcataataaat

Function

symbol description
cabp5a Predicted to enable calcium ion binding activity. Is expressed in eye. Orthologous to human CABP5 (calcium binding protein 5).

NR:

description
PREDICTED: calcium-binding protein 5-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23531 CABP1_2_4_5; calcium-binding protein 1/2/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669230.1 True 996 mRNA 0.43 7 17878595 17888249

Neighbor

gene id symbol gene type direction distance location
pagr1 pagr1,LOC107708911 coding upstream 75978 17796834 ~ 17802617 (+)
g6pc3 NA coding upstream 344318 17521497 ~ 17534277 (+)
tmem101 tmem101,LOC107708986,LOC107693682 coding upstream 387531 17483919 ~ 17491064 (+)
LOC111188179 NA coding upstream 454401 17423685 ~ 17424194 (+)
LOC103022777 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding upstream 468661 17397153 ~ 17409934 (+)
nif3l1 nif3l1 coding downstream 8541 17896790 ~ 17903709 (+)
LOC103030008 NA coding downstream 28615 17916864 ~ 17924970 (+)
LOC103029386 NA coding downstream 140849 18029098 ~ 18039806 (+)
mapk7 NA coding downstream 240191 18128440 ~ 18138878 (+)
LOC103047175 LOC108441166,LOC108273636,LOC107557340 coding downstream 283105 18171354 ~ 18185983 (+)
G37120 maz non-coding upstream 49927 17822411 ~ 17828668 (+)
G37108 vps25 non-coding upstream 84794 17792026 ~ 17793801 (+)
G37097 NA non-coding upstream 164504 17713885 ~ 17714091 (+)
G37096 NA non-coding upstream 164908 17713461 ~ 17713687 (+)
G37092 NA non-coding upstream 168759 17684712 ~ 17709836 (+)
G37137 NA non-coding downstream 4413 17892662 ~ 17892962 (+)
G37141 NA non-coding downstream 24573 17912822 ~ 17913085 (+)
G37151 eif3c non-coding downstream 53599 17941848 ~ 17949188 (+)
G37153 NA non-coding downstream 55409 17943658 ~ 17944500 (+)
G37391 aldoa,aldoab,LOC107720037,LOC107654538,LOC107581735,LOC107674678,LOC107660459 non-coding downstream 154719 18042968 ~ 18055855 (+)
G37131 taok2,LOC108425925,LOC108273910 other upstream 15529 17857917 ~ 17863066 (+)
G37099 NA other upstream 159219 17718231 ~ 17719376 (+)
G37098 NA other upstream 162603 17715129 ~ 17715992 (+)
LOC103045739 LOC103045739 other upstream 169998 17705679 ~ 17708597 (+)
tnrc6b tnrc6b other upstream 537703 17297479 ~ 17340892 (+)
G37152 LOC108425993 other downstream 64331 17952580 ~ 17960304 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other downstream 73691 17961940 ~ 17970999 (+)
LOC103046566 NA other downstream 175734 18063983 ~ 18099979 (+)
G37404 NA other downstream 219315 18107564 ~ 18113926 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other downstream 483129 18371378 ~ 18376345 (+)

Expression


Co-expression Network