nif3l1 (nif3l1)


Basic Information

Item Value
gene id nif3l1
gene name nif3l1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17896790 ~ 17903709 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669231.1
CCAATCAGCTCTCGGCTTGCTGGTCGGCCCCGCCCCCCGCTTCTGCACATGTGTATGGTGCTGGGGCTTCATCCATGATTCCTGGGTGTAGGATTGTGACCAGAAGACTCTTCAACCTGAGACATTGTCTGTCTTCCCTAAACCCCAGCTGTCATCCTCGCCACCTCTCTCAGTCAGGCCATTGTAACGTTTCCATGGATTTAAAGGGAGTTTTAGGGGTTCTTGAGCAACTGGCTCCACTCTCACTGGCAGAATCATGGGACAATGTCGGCTTATTGGTTGAACCCAGCAGACCACGGCCCATCAAAACCATCCTCCTCACCAATGACCTCACGTCTGCCGTCATGGACGAGGCTGAGGAGATGGCATGTGACCTTGTCATCTCGTACCACCCACCTCTATTCCGGCCTTTCAAACGACTGCTCCAAAAAGACTGGAAGCAGCGATTGGCCGTCAGAGCTGTAGAAGGCGGGATTGCAGTCTTCTCCCCACATACATCATGGGACAGCGCCAAAGACGGCCTTAATGACTGGCTGATAGGAGGATTGGGTCATGGACAAGTGTCCGTATTGAGCCAAGCTCTCTGCAGCGCCCCTCAGAGGCATCGGGTGGAGTTCACTGCTGGAAGTCAAGTGGAGCTCGACAGTATCTTGAAGCTGCTGAAGGAGACAGAAAACAGTGAAGCATTTCAGTACACTCTGCTTAGGAATGAGGAGGGCGGTCAGCAAGTGATCCTGACCTGTCCCGGCTCAGCTCTGACCCCTGTCGTTCAGACTGTGTTAGGAAATGTCTCAACCAGCCAGTCCCTCAGCATCACGCAGGTCCAGCAGAACCCTATGCTTGGCTGTGGTCAAGGACGACATGTGGTTTTGGACGAGCCTCTCTCTGTGGGCGTGGCAGTCCAGAAAATGAAGACGCACCTCGGCTTGCCTCACCTCAGACTTGCCCTGGGAGAGCAGAAAACATTAGATGCTGTTGTGAAgagtgcagcagtgtgtgctggcTCAGGAGCTTCTGTCCTACAGGGAGTCAAGGCAGACCTCTACATCACAGGTGAGATGTCCCACCATGAGGTCCTGGACGCTGTCGCTAACGGAACCAGTGTGATCCTGAGTGACCACAGCAACAGCGAAAGAGGCTTTCTGACTGTGATTAAACAGCGTCTGGCCAATCATCTTCCAGATTCTGTTACTATAGCGATCTCCAAAAGAGACCGAGACCCGCTGGAGGTGGTCTGACACTCGTGGACCCTCAAGAATTATCCCATACCTCCCATACCATCCCATGCTTTATCAAGTAAATTGGAATTGGAGTCACTTTAAATACAGCAGTAACAACATGGATTTcattaacatataaaacaaatacaagttACATTTTGATCAAgaagctgttaaataaatatgtttagattaaaaaaaggttaataaaTATACTACAATTGTC
>XM_022669232.1
TTCATAGCAGTTTTATCTGCACTGGGGCTTCATCCATGATTCCTGGGTGTAGGATTGTGACCAGAAGACTCTTCAACCTGAGACATTGTCTGTCTTCCCTAAACCCCAGCTGTCATCCTCGCCACCTCTCTCAGTCAGGCCATTGTAACGTTTCCATGGATTTAAAGGGAGTTTTAGGGGTTCTTGAGCAACTGGCTCCACTCTCACTGGCAGAATCATGGGACAATGTCGGCTTATTGGTTGAACCCAGCAGACCACGGCCCATCAAAACCATCCTCCTCACCAATGACCTCACGTCTGCCGTCATGGACGAGGCTGAGGAGATGGCATGTGACCTTGTCATCTCGTACCACCCACCTCTATTCCGGCCTTTCAAACGACTGCTCCAAAAAGACTGGAAGCAGCGATTGGCCGTCAGAGCTGTAGAAGGCGGGATTGCAGTCTTCTCCCCACATACATCATGGGACAGCGCCAAAGACGGCCTTAATGACTGGCTGATAGGAGGATTGGGTCATGGACAAGTGTCCGTATTGAGCCAAGCTCTCTGCAGCGCCCCTCAGAGGCATCGGGTGGAGTTCACTGCTGGAAGTCAAGTGGAGCTCGACAGTATCTTGAAGCTGCTGAAGGAGACAGAAAACAGTGAAGCATTTCAGTACACTCTGCTTAGGAATGAGGAGGGCGGTCAGCAAGTGATCCTGACCTGTCCCGGCTCAGCTCTGACCCCTGTCGTTCAGACTGTGTTAGGAAATGTCTCAACCAGCCAGTCCCTCAGCATCACGCAGGTCCAGCAGAACCCTATGCTTGGCTGTGGTCAAGGACGACATGTGGTTTTGGACGAGCCTCTCTCTGTGGGCGTGGCAGTCCAGAAAATGAAGACGCACCTCGGCTTGCCTCACCTCAGACTTGCCCTGGGAGAGCAGAAAACATTAGATGCTGTTGTGAAgagtgcagcagtgtgtgctggcTCAGGAGCTTCTGTCCTACAGGGAGTCAAGGCAGACCTCTACATCACAGGTGAGATGTCCCACCATGAGGTCCTGGACGCTGTCGCTAACGGAACCAGTGTGATCCTGAGTGACCACAGCAACAGCGAAAGAGGCTTTCTGACTGTGATTAAACAGCGTCTGGCCAATCATCTTCCAGATTCTGTTACTATAGCGATCTCCAAAAGAGACCGAGACCCGCTGGAGGTGGTCTGACACTCGTGGACCCTCAAGAATTATCCCATACCTCCCATACCATCCCATGCTTTATCAAGTAAATTGGAATTGGAGTCACTTTAAATACAGCAGTAACAACATGGATTTcattaacatataaaacaaatacaagttACATTTTGATCAAgaagctgttaaataaatatgtttagattaaaaaaaggttaataaaTATACTACAATTGTC

Function

symbol description
nif3l1 Predicted to be located in nucleus. Predicted to be active in mitochondrion. Orthologous to human NIF3L1 (NGG1 interacting factor 3 like 1).

NR:

description
NIF3-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669231.1 True 1446 mRNA 0.50 7 17896790 17903709
XM_022669232.1 False 1407 mRNA 0.49 7 17896892 17903709

Neighbor

gene id symbol gene type direction distance location
cabp5 cabp5a,LOC108425940,LOC107708978,LOC107562016,LOC107693687,LOC105909107 coding upstream 8541 17878595 ~ 17888249 (+)
pagr1 pagr1,LOC107708911 coding upstream 94173 17796834 ~ 17802617 (+)
g6pc3 NA coding upstream 362513 17521497 ~ 17534277 (+)
tmem101 tmem101,LOC107708986,LOC107693682 coding upstream 405726 17483919 ~ 17491064 (+)
LOC111188179 NA coding upstream 472596 17423685 ~ 17424194 (+)
LOC103030008 NA coding downstream 13155 17916864 ~ 17924970 (+)
LOC103029386 NA coding downstream 125389 18029098 ~ 18039806 (+)
mapk7 NA coding downstream 224731 18128440 ~ 18138878 (+)
LOC103047175 LOC108441166,LOC108273636,LOC107557340 coding downstream 267645 18171354 ~ 18185983 (+)
LOC103030877 NA coding downstream 296642 18200351 ~ 18214204 (+)
G37137 NA non-coding upstream 3828 17892662 ~ 17892962 (+)
G37120 maz non-coding upstream 68122 17822411 ~ 17828668 (+)
G37108 vps25 non-coding upstream 102989 17792026 ~ 17793801 (+)
G37097 NA non-coding upstream 182699 17713885 ~ 17714091 (+)
G37096 NA non-coding upstream 183103 17713461 ~ 17713687 (+)
G37141 NA non-coding downstream 9113 17912822 ~ 17913085 (+)
G37151 eif3c non-coding downstream 38139 17941848 ~ 17949188 (+)
G37153 NA non-coding downstream 39949 17943658 ~ 17944500 (+)
G37391 aldoa,aldoab,LOC107720037,LOC107654538,LOC107581735,LOC107674678,LOC107660459 non-coding downstream 139259 18042968 ~ 18055855 (+)
G37394 NA non-coding downstream 147989 18051698 ~ 18053555 (+)
G37131 taok2,LOC108425925,LOC108273910 other upstream 33724 17857917 ~ 17863066 (+)
G37099 NA other upstream 177414 17718231 ~ 17719376 (+)
G37098 NA other upstream 180798 17715129 ~ 17715992 (+)
LOC103045739 LOC103045739 other upstream 188193 17705679 ~ 17708597 (+)
tnrc6b tnrc6b other upstream 555898 17297479 ~ 17340892 (+)
G37152 LOC108425993 other downstream 48871 17952580 ~ 17960304 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other downstream 58231 17961940 ~ 17970999 (+)
LOC103046566 NA other downstream 160274 18063983 ~ 18099979 (+)
G37404 NA other downstream 203855 18107564 ~ 18113926 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other downstream 467669 18371378 ~ 18376345 (+)

Expression


Co-expression Network