LOC111192382


Basic Information

Item Value
gene id LOC111192382
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18220871 ~ 18232563 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669251.1
TCCTGAGTGTAATTTATATGATCTGTGAGAGAAGAGTTCAGTCAGCACCATGCTTCTACAGCTGTTTCTgtgtcacggatgacccaggcagggagacgaggaaagcggacacaagtgcagGTTGGTGCTACAACTCGCCCTCATGTAatgAATCTACCTGGCCCTCCATTCCAAACTCGTACTGCAGTGGAATCAGTCAGTCTCCCGTTAACATCGAGAGCAGCAGTGTTCAGCCTGATGGAAATTTAACTGAGCTCCGGTTTAAGGGGTTTGGTGAGCGCACTGCtctaactgaaataaaaaacaccGGTAGAGAAGTGAAGGTGATGTTTGATTATGGTAAGATGTCAGTTGAGGGAGGTGATCTTCCAGGCGTCTATAACAGCGTGCAGTTCCACATCCACTGGGGCGACGGCAGCTCCAGCGCTGGATCTGAGCACACTGTGGATAACAAACAATACGCAATGGAGTTGCACATCGTGAACAGTAAAGCAGGACACAATTCTACTGCAGCTGCGTTCGCAGATCCCACAGGTCTGGATGCTCTTGGGTTCTTTATTGAGGCAACCAATGATACTGGTGAACCCAGAAGCTGGAAGACTCTTACCTCCTATCTGGCAGAAATCTCAAGTGCAGGTGATTCTGTGCCGCTCAATGGGTCTCTCTCTATGGACAGCCTGCTGGAAGGTGTGAACAGGTCCAACTACTACCGCTACCTCGGCTCTCTGACTGTCCCCAGCTGTAATGAAGTTGTGGTGTGGACTTTGTTTAAAGACCCGATCAGAGTCAGCCAGGATCTGATTGATCTCTTCAGCACAAGCTTGTACCTCAACAAGAGCATCAACTCTCCCCTGATCACCAACACGTTCAGACACACTCAGCCCGTTAACGGCAGAGTCGTGAGCTCACAGACAGGAGGCATCAGGAAACGTTCACCATCGTCTTCTGCTTCCACCAGACCTCTCAGCACATTCAGCTCCTTTATCACAGTGATGCTGAGTGTCGCCCTCTCATGGCTGTAGCCTGACTCGGTTATGGATGCTGTGGTGAAGATTTTCAGTGCTTCCTgactggaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669251.1 True 1076 mRNA 0.50 10 18220871 18232563

Neighbor

gene id symbol gene type direction distance location
LOC111192381 NA coding downstream 60811 18142817 ~ 18160060 (-)
LOC103029702 LOC108441164,LOC108413442 coding downstream 94489 18123021 ~ 18126382 (-)
LOC103046869 NA coding downstream 103018 18100566 ~ 18117853 (-)
aldoa aldoa,aldoab,LOC101465268,LOC107720037 coding downstream 164142 18043042 ~ 18056729 (-)
LOC103046263 NA coding downstream 205777 17992067 ~ 18015094 (-)
LOC111192383 NA coding upstream 2575 18235138 ~ 18241122 (-)
LOC103031189 NA coding upstream 10356 18242919 ~ 18253834 (-)
LOC103031500 LOC108441168 coding upstream 37819 18270382 ~ 18278701 (-)
LOC103032028 NA coding upstream 115934 18348497 ~ 18358860 (-)
LOC103033182 LOC108441158,LOC108273897,LOC107664611,LOC107708947 coding upstream 128009 18360572 ~ 18384405 (-)
G37459 NA non-coding downstream 31427 18188473 ~ 18189444 (-)
G37458 NA non-coding downstream 32863 18187049 ~ 18188008 (-)
G37457 NA non-coding downstream 33960 18186368 ~ 18186911 (-)
G37456 NA non-coding downstream 34581 18185594 ~ 18186290 (-)
G37455 NA non-coding downstream 49517 18171142 ~ 18171354 (-)
G37565 NA non-coding upstream 177958 18410521 ~ 18449197 (-)
LOC103033820 NA non-coding upstream 178784 18411347 ~ 18418294 (-)
LOC103035005 NA non-coding upstream 300053 18532616 ~ 18534771 (-)
G37596 LOC108435052 non-coding upstream 315062 18547625 ~ 18547908 (-)
G37597 scn4a non-coding upstream 315520 18548083 ~ 18550231 (-)
vps25 vps25 other downstream 424883 17789951 ~ 17795988 (-)
cntd1 NA other downstream 515848 17692497 ~ 17705023 (-)
LOC103025753 LOC108425979,LOC108274047 other downstream 531487 17534703 ~ 17689384 (-)
LOC103025140 NA other downstream 743993 17473910 ~ 17476878 (-)
G37290 NA other downstream 754847 17432972 ~ 17466024 (-)
LOC103047479 LOC108441156 other upstream 49927 18282490 ~ 18317957 (-)
G37603 NA other upstream 340128 18572691 ~ 18573176 (-)
G37616 NA other upstream 401015 18633578 ~ 18635098 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 1311662 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 1585705 19818268 ~ 19825652 (-)

Expression


Co-expression Network