LOC103031189


Basic Information

Item Value
gene id LOC103031189
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18242919 ~ 18253834 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669253.1
CGTCTCTGAGGTGTATTAAAGCAGCTGAAGAGCCTTTAACAGTGTTCTTCTCACCTGCAGACCTGAGAACATCACAGCTTAAAGatgaaagCCCAGTTCTTCACACTTCTTGCAGTCTGTCTGCTTCCCACTGTTATGAGTGAAGGCTCTTCAGCAGATTGGTGCTACCATCTGCACACCTGCAATTACACCACATGGTCACACACAGTGGTGGAACACTGTAACGGCACCCAGCAGTCTCCTGTTAATATTGTGACCACTGATGTAAAGGAGGACGCCAGCCTGACTGCCTTCAACTTCACTGGGTTTGATGATAATTCCACAGTCCTGCAGATTCAAAACGCAGACGGAAAATCAGTGAAGGTAGGTCTGGACGACAGTAAGATGAGTGTGTCTGGAGGGGGTCTTCCAGGCGTATACAAGACCCAGCAGATGCACCTTCACTGGGGCAACGGCAGCTCTGCACCTGGATCAGAGCACACTGTGAATGGCAAACAATATCCCATggagctgcACATAGTTAACATGAAGTCCACCCACCCAAACATAAGTGTCGCTCTCGGGGACTCAACAGGATTGGCTGTTCTTGGTTTCTTCATTGAAGCAACCAATGACACTGGTTATCCAGAGAGCTGGAAGAACCTGACGTCCTACCTGTCGAGCATTCCTAACAAAGGTGACACGGTGGACATCATGTACCAGTTCACTATGGACAGTCTTCTTCAAGGGGTGGACAGGACTAAATATTATCGCTACCTCGGCTCCCTGACCACGCCCTCCTGCAATGAAGCTGTGGTGTGGACCGTCTTCAAAGAGCCCATCAAAGTCAGCCAAGACTTGATCAACCTCTTCAGCACCACCGTGTACATTAATACAACAAACCACCCACTGATGACCAACACCTACAGGGGAGTCCAGCCCCTGAACACCAGAGTGATAACAACCCAGCGTTCATCAGCAACCACACCCTACCACACCCTGTCcatcagcaccaccaccaccgctGCACTGCTGCTCTACTCTCTACTGAGCTGGTTGTAGTGTGCAGTGATTGGACAGAATTTTGCTTCTATTGAGGAATGAGTGTCTAGTCTAGACCTACGTCTTCCGACCAAATAGAGGATCCACTAACTGGACCAATACTTGTAAATGATCATCATGTTGTATGAAGAGATAATGAAGCCACTGAAGGTTATTTTTGTAATGAAGGTTCAGATGATGAATTCAAACACAGGGAGAATGTGCTTTTTATGTGCAATGTAtctgtattaaataatttactgatgtacaaaaagagtaaaatgtttggtgatatgtatttattatatatgccATGTTTTCTTACTATTGTAAACAGTTGtttctataaaaaaagagaatagcAGGACATTGTGCTGCATTAACAGGACAAACTGaaattgtgtgtgttgtaataatcactagtatgaataaatgccgtTTGAGCTG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669253.1 True 1467 mRNA 0.45 9 18242919 18253834

Neighbor

gene id symbol gene type direction distance location
LOC111192383 NA coding downstream 1797 18235138 ~ 18241122 (-)
LOC111192382 NA coding downstream 10356 18220871 ~ 18232563 (-)
LOC111192381 NA coding downstream 82859 18142817 ~ 18160060 (-)
LOC103029702 LOC108441164,LOC108413442 coding downstream 116537 18123021 ~ 18126382 (-)
LOC103046869 NA coding downstream 125066 18100566 ~ 18117853 (-)
LOC103031500 LOC108441168 coding upstream 16548 18270382 ~ 18278701 (-)
LOC103032028 NA coding upstream 94663 18348497 ~ 18358860 (-)
LOC103033182 LOC108441158,LOC108273897,LOC107664611,LOC107708947 coding upstream 106738 18360572 ~ 18384405 (-)
LOC103033508 si:ch211-255p10.4,brsk1,LOC108441159,LOC107598587,LOC108247084,LOC103033508,LOC107557374,LOC108274928,LOC107654020,LOC107658484 coding upstream 134844 18388678 ~ 18409918 (-)
LOC103047794 mapt,LOC108274153,LOC108441162 coding upstream 199112 18452946 ~ 18498356 (-)
G37459 NA non-coding downstream 53475 18188473 ~ 18189444 (-)
G37458 NA non-coding downstream 54911 18187049 ~ 18188008 (-)
G37457 NA non-coding downstream 56008 18186368 ~ 18186911 (-)
G37456 NA non-coding downstream 56629 18185594 ~ 18186290 (-)
G37455 NA non-coding downstream 71565 18171142 ~ 18171354 (-)
G37565 NA non-coding upstream 156687 18410521 ~ 18449197 (-)
LOC103033820 NA non-coding upstream 157513 18411347 ~ 18418294 (-)
LOC103035005 NA non-coding upstream 278782 18532616 ~ 18534771 (-)
G37596 LOC108435052 non-coding upstream 293791 18547625 ~ 18547908 (-)
G37597 scn4a non-coding upstream 294249 18548083 ~ 18550231 (-)
vps25 vps25 other downstream 446931 17789951 ~ 17795988 (-)
cntd1 NA other downstream 537896 17692497 ~ 17705023 (-)
LOC103025753 LOC108425979,LOC108274047 other downstream 553535 17534703 ~ 17689384 (-)
LOC103025140 NA other downstream 766041 17473910 ~ 17476878 (-)
G37290 NA other downstream 776895 17432972 ~ 17466024 (-)
LOC103047479 LOC108441156 other upstream 28656 18282490 ~ 18317957 (-)
G37603 NA other upstream 318857 18572691 ~ 18573176 (-)
G37616 NA other upstream 379744 18633578 ~ 18635098 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 1290391 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 1564434 19818268 ~ 19825652 (-)

Expression


Co-expression Network