plekhm1 (plekhm1)


Basic Information

Item Value
gene id plekhm1
gene name plekhm1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18615248 ~ 18640148 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669274.1
GAGGATCTTCAGTACAGTGTGTAAATTACAGCGAGAGCAGGCCGACCCAGTACTGCTGCTGTTCCTGCTGTCTGTCTGAGTTCATCTGCCGCTCATCTGCTTGTTTTTAAGCTCGGTTAGGGAGACTGGAAGCTGCTGGATTTAATCTAAAACACATTTCCCCCTGTTCTTTCTGAATAAACTTCATTTAGTCCGTGACAGACATGATGAAGTGATGTGATCTGAACAGGAGTCATGCTCGCCACACAGACCGCTGACTCTGTCCCAGAGGCCAAGAATGCCAAGCAGTGGATTAAGGAGAAGATAGCGCAGACGCTGAAGGCCCTGCAGAAGCGCTATGTGACTACAGACGCCGCGGTGACCAGCGAGGATTTGGAGGCCAATCAGCTCTGCTGTGCTCTGGAAGCAGTTTTCATCCACGGCCTGCGGAGCAAACACATCCGCACGGACGGAGCCGGGGCCCGCGGCCGCAAGGGCCCAGCCCTGCCTCAACCCGTGTTCTGGAGCCTGCTGAAGAGCGTTACTCACAGAGATGTGATCCTGGAGCTGGAGGGTTTGAGCTTCATCAACACGGATGTAGGCCGCTGTCGGGCGTGGGTTCGCCTGGCGCTCAACGACGGTCTCCTGGAATGTTACCTGATGTCTCTTCTGCGTGAGGACACCAAGCTCAGTGTGTATTACCAGCCTGGAGCTCTTCTCCTGGACCCTGAGGACCGCGAGGTTCTCCTCAGCCTGCTGCAGGGCCTCGCCTCCCTGGCCTTCACCCTTTCCTACAAATCGGCCGTGCTGAACGAATGGACCACCACTCCGCTGGCCCTCGCCGGCCTGTGCCCCGCCTCTGCGGCTGATGACTTCCAGCTGCCCTCCAGGAGGAAGGAATCCTGGGATACAGCCTCTCAGTCATCCGGGGGATCTTCTTCTGGTGGGTCCGCAAACTCCGATGGGGCTCCTGAGGTGATCCACAGGGGGCTGAGCAAGGGAATAAATGGGGCCGGTGGGGTGCGGACCCCGCTCACAGCGTCTGATCTGAGCCTGGACACGGCCGGGTCCTCCCAGCTGTCCTCCAGCCTCGGTTCTGACGGACCACTGCAGGCGCAGGAGCAGCGGggcctggagagagagagctggagcaGCCATACGGAGCTCGCCCACGAGGAACAGCATAAGAGCACGCTCAGAAAgGGCAGCAGCTCCTCCAGCCAGGATCTGACCAAGGAAGACGTGGACATGGTGAGCCCTCCTTCAGACAGCACCAACACCACCCACAGCAGCAGCGATGAAGACTCTCCCAGACCTTCCTCACCCAACAAacagcacacacctccacctCTCTCCGCAGATACGTCTGGACCTGATACGCCCTCTACTGTTCCAGAGGAGGAGATTACAGCAGAGATTCCATctaaaccagaaccagaaccagaacctgcGGTGGTGACGAGACCTGCAGCCACAGAACATTCAGTACAACAGGAATCTCAATCCAAACCCTCTGTTTCCTCCACCCCTGCTGTTCCCACCAGCACCATCTCTAACTCAGTGACCCCCAGAAATCCTCCAGTAGCCTCTGGTGCCCTCAGACCAGAGGAGAACCCTGGACGCTCCTCTGCCCAGCGCAGCTGCAGCGTCGTCAGCAGGAAAACATCTTCAGGCTCTCTTTTTAATTCTCCGTCGTGGATCTCGGAGGAGGACTTCTATAAGCCAGACCCGTATGGAAGTGGTGATTCTGAAGGGCCCGATGTTTCAGACGTTACTCAGATGAACGGGACTGTTTCTCCTGCTTCTCCTGAACTGGCGTCCCATCAGTCACCACCCTGTGTGGTTCATCGCAGGCAtccagggcTGTCTAACCCGTTCCGTGGCCTGTTGAAGCTGGGTCAGCTGGAGCGCCGGGTGACCCTGGGCATGTGGAAGGATTTCTACTGTGAACTGTCTCCCTTTGAGCTGCGGCTGTACACCGACGCTGAGGAGCGCAGCTGCTGTGAGAACTGCTCTCTGCTGCGCTGTGAGGATGTGCGCCTCTCCTCCGCGGCGGAGGGACGCTTCCGACTCAGTTTCCCAGGCAAGAAGCTGGAACTGCGAGCTCCATCCCGGGGCGAGGCCGAGGACTGGGTGGACCGAATCGTGGAGGCGGTCAATAAGGCCCGACCTGCGGCTCGAGATGAACACTGGGAAGTTCTTCAGGCGTCTCCAGTTTTGGGAGATCGCCCTGGTGACCGAGACAACTCCTCTCTTTCCTCCACACCCTCCAGCCCCGAGAGGGAGCCAGCCGAGCCTCCAGAGACGGATTGGACCCGTCCAGCTGATCCGGAGCCGGACGCTATTAAGGAGGCGGTGGTGTGTCTGGGTCAGGAGGAGCGAGGCTGGAGATCCCTggtcctctccctctctctggagGCTCTCAGAGGTTTCTCTGTGCAGGAGGGCCGTAAGATGCCTGTTTTCAGTCATCCCATCGAGGCCGTCCGGGACGTGGTTCCAGACGCAGCTCTGGGAGGACCGGCCTTCTTTAAGGTTCTGATGGGAAAGGAGACGCTGACGGTGAGGGCCGAGAGCGGGGAGGAGGCGCGCACCTGGAGGAGCCTCATCAGAGGAGCACTGGACTCCTACCTGGAGACTCAGGACGACGGGATGGCAGAGGAGGTGATGTCTCCCGGCGGTGGACAGGGAGGAAATATCAACAGGCTGGTCCAGCATAGGCTGAAGGGAGATGGTGTCCTGCTGCCTTACCTGACCACTGTGCCTACAGAGAGAGGACTGGACGCCCAGAGCTTCAAGTGTGCAGgatgcCCCAGACaggttggtgtgtctttgggtCGTGCCAGGCTGTGTGAATTCTCAGGTCAGTACTACTGTGAAGGCTGTCACCATGGCGACACCACCATCATCCCCTCCCGCATGGTGCACAACTGGGATCTGACCCCACGTGAGgtctcCGGGCCAGCTCTGAAGCTGCTGGCGAATATAAAGCAGGAGCCGCTGCTGAACCTGGACCTCCTAAACCCTGATCTGTTTAACCACACTGAAGTCATGGCAGCAGTCCAGTGCCTCAGGCAGAAGCTCCGCCTCCTCGGAGATTACCTGCTCATCTGCCGCAGTGGAGTCCGCAAGAAAATTGAGGCcaggCTGAATCAGAGGATGTATCTGCTGGAGTCCAGTAGTCTCTACAGTGTGTTGGATTTAAAGGAGATTGCAGATGGTCAGTATGAAGGCTTCCTGCAGTCCCAGATCCAGTTCTCATCCAGCCACGTGCATCACTGTGACCTCTGCACCCAGCGAGGGTTCATCTGCCAGATATGCAACACGGACGACATCATCTTCCCATTCCAGTTCGAAACCACGACCAGgtgtaCGGTGTGTAAGACGGTGTTCCACTCGTCCTGTAAGGCCCAGAATCTGTCCTGTCCTCGCTGTGAACGCCGGCAGAGATACCACGAGAGAGTCCTGCTCAGATAGCTGCATGCTGGCTGCATGTCTGGGTGCCTCGCTCTGACGCCTGCAGACCTgatatttaatgttaatgtgtttattatttttaatgtagtcTTAAGTGCACTTATTTATAGAACTGTAAATACTTCACTCTCTGACTGCGCACTCTCTGAGTGTGCCGCTTAGCTGATGGTATGATTTTAGGGGTGGGGTGGCGAGGTGGTGGGAAATGCTACAACTTGCACTGAGAGActaatgctgctgctttctctgaCTATTGATTATTGACTATAGACCAGATTATGGTCCTGTTTATCTGTCAATTCCTCAGATTGACTCTCAAATAACTGGATTACTATAATCTTTAAACTTCTGTACAGAAACATTCAGAGATTATGCAAGCTTGGGTTTAGAATCACGTGCATTTTGCCAAAGGCACTttcatttgctgttttatttgcaGCATCAGGAGTTTCTCTTCTCACCTCAACTCGGTTGAAGTTGGCTGCCTGTGGgaattttccattccaccttaaataaaaagaaaacagtgcaacagttCTCTACTAGCGCCCTCTGCtgcattatttcttttaatgaattagcataaaaaaatctgaatgagaagcttttttttcacatgtgttattttaaggtaaaatggaaaaatctaCTGCAAGTcaactatttaaggtggaacagaggAAAATTCGCATGAGATGCCAACTTctgccttttatttttttatttatttattttattttattttttctgaagcTGTCAAAAGTTCTGCCACGGATCAGATCACGCAACTCTCCTGCTTTTTATAGACCTTTTTTAAcacttcttttttatatatatataaaaatatctgtTTACAGACCAAACACTAGTCTTAACTGAGGTTAAGCTGTATTTTAATACTTCAGTAGCATTCTAGCTTTGAacttttatatctatttttcaaTGTAAGGAATAATCTTTGATGACTTCTCGTGCCTCTTGCCTCTCGTGTTtcttacatgtttttatttgttctctCATACTGTACAGTTTTCTTTGTATCTTAACTCTATTGtgccaaatataatattatattatatataattattataattatatatatatatattgagatatttaggcTGAGAGCAATTAGTAGGGATAATGTAGTCATTGTCTCTCAGATGGAATAAGTCAGTCAGAAGAGGCTCTCTAGATCTTGCCTATTCTATTGCACTAAACTGGTTATACTGGCAGGGCTGTTTGTGTCCAAGGTTGCCAGTAATGCagtataaaagagaaagaagagatcCACTTCAGCTTCTTCAGTCTTTTTctcacatttaaaatttaaaatgtgtgtatagccctatccggacgggattagtttctcaggggggcgtctgtgataaaa

Function

symbol description
plekhm1 Predicted to act upstream of or within autophagy. Predicted to be located in endosome and lysosome. Human ortholog(s) of this gene implicated in autosomal recessive osteopetrosis 6 and osteopetrosis. Orthologous to human PLEKHM1 (pleckstrin homology and RUN domain containing M1).

NR:

description
PREDICTED: pleckstrin homology domain-containing family M member 1

GO: NA

KEGG:

id description
K23282 PLEKHM1; pleckstrin homology domain-containing family M member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669274.1 True 4849 mRNA 0.52 13 18615248 18640148

Neighbor

gene id symbol gene type direction distance location
cd79b NA coding upstream 16418 18591905 ~ 18598830 (+)
LOC103021833 scn4a,scn4aa,LOC108435052,LOC107732174,LOC107654028,LOC107598592,LOC107664628,LOC107708946 coding upstream 31467 18533534 ~ 18583781 (+)
LOC103021514 NA coding upstream 85293 18518908 ~ 18529955 (+)
LOC103034039 LOC108441161 coding upstream 166045 18420193 ~ 18449203 (+)
LOC103032559 LOC108441169 coding upstream 271787 18332474 ~ 18343461 (+)
LOC103035226 rab5c,LOC103035226,LOC108431395,LOC108274320 coding downstream 68837 18708985 ~ 18716376 (+)
LOC103023065 LOC108431394,LOC107590592 coding downstream 85744 18725892 ~ 18806982 (+)
LOC103035736 dnajc7,LOC103035736,LOC105007721,LOC108431365,LOC100706534,LOC101467049,LOC102783216,LOC105919562,LOC106589259,LOC106607285 coding downstream 174624 18814772 ~ 18827717 (+)
LOC103023371 LOC108431393,LOC103369716 coding downstream 189819 18829967 ~ 18865676 (+)
klhl11 klhl11,LOC107551837,LOC107694394,LOC107556757,LOC107674689 coding downstream 228998 18869146 ~ 18878812 (+)
G37557 NA non-coding upstream 142675 18470159 ~ 18472573 (+)
G37534 NA non-coding upstream 228596 18386414 ~ 18386652 (+)
G37501 LOC108441156 non-coding upstream 297296 18313306 ~ 18317952 (+)
G37492 LOC108441156,LOC108274106 non-coding upstream 325862 18286903 ~ 18289386 (+)
LOC111192384 NA non-coding upstream 361476 18232596 ~ 18253772 (+)
G37652 NA non-coding downstream 172591 18812739 ~ 18812951 (+)
LOC111192409 NA non-coding downstream 323089 18963237 ~ 18964036 (+)
G37735 NA non-coding downstream 574420 19214568 ~ 19214818 (+)
G37751 NA non-coding downstream 701951 19342099 ~ 19342794 (+)
G37767 NA non-coding downstream 834474 19474622 ~ 19476578 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other upstream 238903 18371378 ~ 18376345 (+)
G37404 NA other upstream 501322 18107564 ~ 18113926 (+)
LOC103046566 NA other upstream 515269 18063983 ~ 18099979 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other upstream 644249 17961940 ~ 17970999 (+)
G37152 LOC108425993 other upstream 654944 17952580 ~ 17960304 (+)
LOC103022762 NA other downstream 5487 18645635 ~ 18707728 (+)
G37749 NA other downstream 689220 19329368 ~ 19331661 (+)
G37812 mms19,LOC106578995 other downstream 840908 19481056 ~ 19484915 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other downstream 848751 19488899 ~ 19511441 (+)
G37943 NA other downstream 1515580 20155728 ~ 20158339 (+)

Expression


Co-expression Network