LOC107197613 (LOC108429207,LOC108429768)


Basic Information

Item Value
gene id LOC107197613
gene name LOC108429207,LOC108429768
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19062857 ~ 19124736 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669290.1
TCCTGCGACTTGACAGATGAGCTCGTGCGGATGGATGGattatggattttttattttgtgtgttgcaggtgtaataaaaaaaagtgataacAACAACAGCACCACGTGCATCAGCTGATTAAGGACCTTGCTGATAATGCGCGTGCATCTCACTGTTTTTTGATCGTGAACTCGCGCGCTCTTGGTTGgaaactatttttttgtgtgtgtgtgtgtatatgtgttttagCGCGCGCGCGGGTGCGTGCGCGCGTGTGTAGCATGGCCGCGGCTCGCGCTGCAGCGTCATGGTCCCGGAGCGCGCGCCCGGCCGGGTGGCGGTGAGGAAGCAGCTCGCGCTCATGCTGCTCTCGGCGCTCGCGACCCTGTGCGTGCTGCAGAGCCTCGCGGTGACCTCCGCGCGCGCGCCCGCTCCCGCCGAGGCACCGGCGGCACCTgcggcagcggcggcggcagcgTTGGCGGGTGGAGGCGCGCGGTGGAGCGCGCGCAGGACGCTGCTGAGGCCGGAGGATGACGGGACGAAACGGCTGCCCCAGGCTCTCATCATCGGCGTGAAGAAGGGAGGCACGCGCGCGCTGCTCGAGTTCCTGCGCGTGCATCCCGACGTGCGCGCGGTGGGAGCGGAGCCGCACTTTTTCGACCGGAACTACCAGAACGGTCTGCAGTGGTACAGAGACCTGATGCCCAAAACACTAGAAGGTCAGATCACCATGGAGAAAACTCCTAGTTACTTTGTGACCCGCGAGGCTCCAGCCCGGATCTACGCCATGTCCCGGGAAACCAAGCTCATCGTGGTGGTGAGGGACCCGGTCACTCGGGCCATCTCGGACTACACCCAGACTCTCTCCAAGAGGCCGGACATTCCCTCTTTCGAGAGCCTGACCTTCAAAAACAGGACTACGGGTCTGATCGACACCTCGTGGAGCGCCATCCAGATCGGCATCTACGCCAAGCACCTGGACAACTGGCTCCAGTACTTCCCCATGAGCCAGATCCTGTTCGTCAGCGGAGAGCGGCTGATCAGCGACCCGGCCGGAGAGCTGGGCCGGGTGCAGGACTTCCTGGGGCTCAAGAGGATCATCACGGACAAACACTTCTACTTCAACCAGACCAAGGGCTTCCCCTGCCTCAAGAAGGCTGAGGGCAGCAGTAAGCCCCACTGCCTGGGCAAAACCAAAGGGCGGACCCACCCCAACATAGACCCTGAGGTCGTGCAGAGACTCAGAGACTTCTACAGACCCTTCAACATGAAGTTCTACCAGATGACTGGGAGAGTGTTTGGCTGGGACGATTGATGATTGACCGAGGAATCAGCTTAaggaaaaaacgacaaaaacGTTCACTGTGAGATATGCTTGAGGACAATGAAAATGTCTCCGTAAAATGAATGCACTTATACAtgcatttttagtgttttaagtGCGTCATTTATCTCACCAGCAACAGAGACATGTTCTGTGCTTCATCCTGACGAAGACATGCCACTTCACTATCCACTTCAGTGTATGCTAACAACAATTCCTGGAGTTCTGGACATTTTCAACCAACGCCTAGAGTCCTGGAGGGGCCAAAAACTGCAGATTTTCCGTTTTCCTGGCCATTTATCAGCTATTTTACCTATGAATACCCCAGTAATTAGACTTGCGTTTAGGGAATTTGGCAGatgagccttattttaaagtggaatcTTATCCCATGTCTTCTTGcaaattagtattttttatgtttcccTTCACAAGGCTTTATATGATATTTGATTAAATTGGATAAACCAGTCCAGAATGACTTGGCGTCCATTTCTTTAGAACACGCCAGGAAAGTTCGTACTATAGCAGGAACAGCACTAAAcacactgcagtgtgtgtgtggccctCCAGGACCCGAGCCGGACATCTTTTCTCGAATGTGCTGAAATAAAAGAGTCATCCATGGGAATTACTAGAATTACTGAGAGCTTGGACCTATCCGGACGCTGTGAGTCAGAGTTATAGAGTATTTTTATGGAACTATGCATCAAATCTCAGTGGGTTGTGAACTGTGAAACCTCCACTGCGAAGCTGGCGACATGACGGAGCTCAGCTCAGTTTTgccatatttaaaaaagaaaaaaaaggaactaCGCTGCTTGGAAAagtttgcaattttttttaaagaaacgataaaaagacaaaaagaagtattttttgaaaagttatttatttaagaatatgGAATGATGTACACAGATCTAGCGTagctattttaaataatactcaCTGAGATTTCTCCTCAACTTCTGTATGGTGTACATTTACTTTACGGTGCCTGATGGGGTtggattttgtattttataacattataactgTCTTCTACTAAACATctattttatttggtttatgaTTTTGGTATCAGTGTGCCTCCCTgtgttacagatttattttttattttttttcccattttccccaaaattttctggccaattgtcccacctatt

Function

NR:

description
PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 3A1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K07809 HS3ST3; [heparan sulfate]-glucosamine 3-sulfotransferase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669290.1 True 2476 mRNA 0.50 2 19062857 19124736

Neighbor

gene id symbol gene type direction distance location
LOC103034677 NA coding downstream 550772 18503640 ~ 18512085 (-)
LOC103047794 mapt,LOC108274153,LOC108441162 coding downstream 564501 18452946 ~ 18498356 (-)
LOC111192385 NA coding downstream 585736 18474987 ~ 18477121 (-)
LOC103033508 si:ch211-255p10.4,brsk1,LOC108441159,LOC107598587,LOC108247084,LOC103033508,LOC107557374,LOC108274928,LOC107654020,LOC107658484 coding downstream 652939 18388678 ~ 18409918 (-)
LOC103033182 LOC108441158,LOC108273897,LOC107664611,LOC107708947 coding downstream 678452 18360572 ~ 18384405 (-)
LOC103043551 LOC108444285,LOC108273949 coding upstream 155250 19279986 ~ 19291010 (-)
LOC111192386 rac3b,rac3,LOC100712409,LOC107571767,LOC108444292,LOC106535622,LOC106610298 coding upstream 205931 19330667 ~ 19340948 (-)
lrrc45 lrrc45 coding upstream 217293 19342029 ~ 19353789 (-)
LOC103038385 prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040 coding upstream 298164 19422900 ~ 19436284 (-)
mms19 mms19,LOC107578808 coding upstream 332564 19457300 ~ 19487247 (-)
G37677 NA non-coding downstream 154889 18869128 ~ 18907968 (-)
G37682 NA non-coding downstream 170942 18890061 ~ 18891915 (-)
G37676 NA non-coding downstream 196738 18865910 ~ 18866119 (-)
G37668 NA non-coding downstream 197300 18864176 ~ 18865557 (-)
G37671 NA non-coding downstream 200346 18860039 ~ 18862511 (-)
G37711 NA non-coding upstream 13730 19138466 ~ 19138693 (-)
G37712 NA non-coding upstream 17483 19142219 ~ 19142521 (-)
G37775 NA non-coding upstream 136743 19261479 ~ 19380932 (-)
G37776 col1a1b,LOC108444293,LOC108273947 non-coding upstream 138240 19262976 ~ 19265179 (-)
G37771 col1a3,LOC108444293,LOC106610502,LOC106589632 non-coding upstream 150415 19275151 ~ 19352477 (-)
G37616 NA other downstream 427759 18633578 ~ 18635098 (-)
G37603 NA other downstream 489681 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 744900 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 1266869 17789951 ~ 17795988 (-)
cntd1 NA other downstream 1357834 17692497 ~ 17705023 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 419489 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 693532 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 1386935 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 2748584 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 2888769 22013505 ~ 22038504 (-)

Expression


Co-expression Network