LOC103043551 (LOC108444285,LOC108273949)


Basic Information

Item Value
gene id LOC103043551
gene name LOC108444285,LOC108273949
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19279986 ~ 19291010 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669294.1
ACGGAGAGTCCACTGTCTTCTCCAACTGCCCCTGTCAATCAGGGGTCAAAGCAAAATGGCAGGCTGGGGGGACTGGACTTTAGCACTCACAGTGTGTGCAGCTGGTCTGCTGGTGGTCCAGGCCGACATTCTAACGTACGCTACTGTAGGCCAGCTGTTTGTGCGCGAGCTGCAGAGGGAACATTTCCAGAATGAATTTGAGCCTTTCCTTTACGGGAGGGTGTTTAATGACCCCATGGTGTTTAAGTGTAACCGGGAGCTGTTCCCGGATCTCCCCCGGTGGCTGCGCTTCACCCAGCGTCACCCCTACGATAACGGCTTCCTGTACGGCACCCCGCTGCAGGGGGACCTGGGCAAGAACACAGTGGAGatattCGTGACAAATAAGCGAAGTTATGACACCTTCAAGGAGCGGCTGGTTATAAATGTGGGGCCTGCAGTCAAACAAATGCCCTACCAGGCTGAGTTCTTCATTGAGCTGAGGGAGATTGAGAAGGTGCTTCCCTCTGAGGTTCAGAATGAGATAAAGAAGGACATTCAGATGATCTGGGGCACCGACAAGCTGGACTACGTCAACATCACCTCTGCCCTGGACCGGGGCGGCCGTGTCCCCCTGCCGCTGGCTGGACACTATGAGGGcGTGTACGTGAAGCTGGGGTCAGACCAGCCGTACTCTAAGTGCTTGCGGAGGCTGCAGACGGAAGATCACCAGAGAGAGTGTAAAGCCGGCGGCAAAATCGCTGGAGACTGCAGCGTCTGCACCATCCCTGCTAACTGTGTAACCTGGTGCAAATCAGTCTTGATTGATTTGTCCAGACCCGTTCCCCCTCCTCCAGCCCCGACTGTTGGTTCAGGAATCCTGGCCTGGGGTGGCGAGTTTAACCCCCCCGACTCTCCACCTGACAGAGACTTTTTACCCGAGTACATCGTCACTGTAATTATTCCTTTTATTCTCGCCATCATCCTCTGCCTCATTCTGGCCTATGTGATGTGCTGCAGGAGAGAAGGAGTTCAGAAACGAGATGCCAAGACCTTAGATATCCAGCTGTACCATTACCACACCATCCATGACAACAGCAGTGAGCTGAGGACGATGGCGGACGGTCGCTCAGGCGCTCCTCAGCCCCGGTCCACTCTGCCCATGTTCAACGCTCGCACTGGAGAGAAGGCGGCTCCTCAGTATCCCTTCGACAGCGTCCACATCCCTCTCATCATGGCCCAGCAGGAGCCGAATGTAGACACCTTTCCCAGGAAATAACAGCACAAATCTGAGGAACACATAAAAGGAGAAATTTGCTTTGGAGCTTTTCTCTGTGGCCTGCTGCTTTTATCTGACCTGTGTTTCATATATAACCACACATTTGCACTGAAGTGTTTTGAGCTGTGAACATACACTTTACCATATATACTGCACAGATGACTTGTTCTGGATTTGTAATGCTGCCTGTTGTTTACCGTTTTAAACAGTGTTGGATTTTTATCTTcatatttgaaaaatataataaaatctaTTGGGTaca

Function

NR:

description
PREDICTED: alpha-sarcoglycan-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669294.1 True 1520 mRNA 0.52 11 19279986 19291010

Neighbor

gene id symbol gene type direction distance location
LOC107197613 LOC108429207,LOC108429768 coding downstream 155250 19062857 ~ 19124736 (-)
LOC103034677 NA coding downstream 767901 18503640 ~ 18512085 (-)
LOC103047794 mapt,LOC108274153,LOC108441162 coding downstream 781630 18452946 ~ 18498356 (-)
LOC111192385 NA coding downstream 802865 18474987 ~ 18477121 (-)
LOC103033508 si:ch211-255p10.4,brsk1,LOC108441159,LOC107598587,LOC108247084,LOC103033508,LOC107557374,LOC108274928,LOC107654020,LOC107658484 coding downstream 870068 18388678 ~ 18409918 (-)
LOC111192386 rac3b,rac3,LOC100712409,LOC107571767,LOC108444292,LOC106535622,LOC106610298 coding upstream 39657 19330667 ~ 19340948 (-)
lrrc45 lrrc45 coding upstream 51019 19342029 ~ 19353789 (-)
LOC103038385 prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040 coding upstream 131890 19422900 ~ 19436284 (-)
mms19 mms19,LOC107578808 coding upstream 166290 19457300 ~ 19487247 (-)
rbp3 LOC108437312 coding upstream 313231 19604241 ~ 19606942 (-)
G37776 col1a1b,LOC108444293,LOC108273947 non-coding downstream 14807 19262976 ~ 19265179 (-)
G37712 NA non-coding downstream 137465 19142219 ~ 19142521 (-)
G37711 NA non-coding downstream 141293 19138466 ~ 19138693 (-)
G37677 NA non-coding downstream 372018 18869128 ~ 18907968 (-)
G37682 NA non-coding downstream 388071 18890061 ~ 18891915 (-)
G37829 ubtd1,LOC106578996,LOC103038242 non-coding upstream 198826 19489836 ~ 19508582 (-)
G37828 ubtd1b,ubtd1,LOC108437310,LOC107693664,LOC107720068 non-coding upstream 218456 19509466 ~ 19514603 (-)
G37834 NA non-coding upstream 230061 19521071 ~ 19521393 (-)
G37895 NA non-coding upstream 366509 19657519 ~ 19658113 (-)
G37916 NA non-coding upstream 485887 19776897 ~ 19792611 (-)
G37616 NA other downstream 644888 18633578 ~ 18635098 (-)
G37603 NA other downstream 706810 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 962029 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 1483998 17789951 ~ 17795988 (-)
cntd1 NA other downstream 1574963 17692497 ~ 17705023 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 253215 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 527258 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 1220661 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 2582310 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 2722495 22013505 ~ 22038504 (-)

Expression


Co-expression Network