LOC111192386 (rac3b,rac3,LOC100712409,LOC107571767,LOC108444292,LOC106535622,LOC106610298)


Basic Information

Item Value
gene id LOC111192386
gene name rac3b,rac3,LOC100712409,LOC107571767,LOC108444292,LOC106535622,LOC106610298
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19330667 ~ 19340948 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669298.1
GCCGAAGAGCCGAATCGGCGGCGGAGGGCTGGAACCTTGTGTGTGATattttcagctccccatcacaaaCTGGAATTGCTAAATACACTAAAACTGCGAGATTTAGACACACACCGGCGAAGCTACGCTTACAAATGCAAGCTATTAAATGCGTGGTGGTGGGAGACGGggcTGTGGGTAAGACCTGTCTACTAATCAGCTACACCACCAATGCCTTCCCCGGCGAGTACATACCCACAGTATTCGATAACTACTCCGCCAATGTTATGGTGGATGGGAAACCGGTCAACCTGGGCCTGTGGGACACAGCAGGACAGGAAGACTACGACCGCCTTCGCCCTCTCTCATATCCACAGACGGACGTGTTCTTAATATGCTTCTCCTTAGTGAGCCCTGCATCCTTTGAGAATGTCCGTGCAAAGTGGTATCCAGAGGTGAGACATCACTGCCCCAACACGCCAATCATCCTGGTGGGCACCAAGCTGGACCTGCGTGACGACAAGGACACCATCGAGAGGCTGCGGGACAAAAAGCTCTCGCCCATCACTTACCCACAGGGCCTGGCCATGGCCCGAGAGATCGGTGCTGTGAAGTATCTGGAATGCTCAGCTCTGACCCAGCGTGGCCTGAAGACCGTGTTTGATGAGGCTATCCGGGCCGTCCTCTGCCCCCCGCCTGTTAAGAAGCGAGGAAAGAGGTGCACCCTGTTCTGAACGCTGGGACGACCTGGAGGAAGGTCCCAGCAGCTTCCTGccccaccccaacacacacacacacacacacacacattgctcaACACTACAGCGGTAGGATTCTCCACTGAGAGAGTCCTACACCAAACACTACGTCCGTCAGGCTCTGAGACAGACGCCTCAGTTTCCCGAGGTTTTTTTCCATGTGTAGAGTTAATAcatgtgtgtgagaaagtgtatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacgcgAGTCGTTGGCATGGTTTGAGCCGAGGGGTGTTGTTTGGTCAGAAACATTGTGGTAGATGGCTTTTTTAAGTCCGTGCTTGCTTTCCCTTTCACACCACGACACGACGTCCCTTTCACTATGTTTTCTGGtgatcacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacgcgAGTCGTTGGCATGGTTTGAGCCGAGGGGTGTTGTTTGGTCAGAAACATTGTGGTAGATGGCTTTTTTAAGTCCGTGCTTGCTTTCCCTTTCACACCACGACACGACGTCCCTTTCACTATGTTTTCTGGtgatcacagtgtgtgtgtgtgtgtgtgtgtgtgttgacatgCTTGTGAGAAGAACAGTGGCGTGGGCTACTGGACTGGCTACATGTTTAGATGGTTGCATAGAACGCTCACATGTCCTTGATATCGGTTCTGCTCCTGTTGGCTCTAGAACAAACCACAGGTTTGTAATGTTGATGATGGTAAAATAGTGGCAAATCTGATCAAATGCGTTTTCTGTTGGgactatatacagtattcaggaatagttttaggcacctgtgggaatttcagtaaagaaaaagtgcaGTTCTTATCTGgtca

Function

symbol description
rac3b Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Acts upstream of or within actomyosin structure organization and rhombomere boundary formation. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and neuron projection. Is expressed in rhombomere. Orthologous to human RAC3 (Rac family small GTPase 3).
rac3 Enables GTPase activity and calcium-dependent protein binding activity. Involved in several processes, including Wnt signaling pathway; cell projection assembly; and positive regulation of cell adhesion. Located in several cellular components, including growth cone; neuronal cell body; and perinuclear region of cytoplasm. Part of filamentous actin.

NR:

description
ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04392 RAC1; Ras-related C3 botulinum toxin substrate 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669298.1 True 1586 mRNA 0.50 6 19330667 19340948

Neighbor

gene id symbol gene type direction distance location
LOC103043551 LOC108444285,LOC108273949 coding downstream 39657 19279986 ~ 19291010 (-)
LOC107197613 LOC108429207,LOC108429768 coding downstream 205931 19062857 ~ 19124736 (-)
LOC103034677 NA coding downstream 818582 18503640 ~ 18512085 (-)
LOC103047794 mapt,LOC108274153,LOC108441162 coding downstream 832311 18452946 ~ 18498356 (-)
LOC111192385 NA coding downstream 853546 18474987 ~ 18477121 (-)
lrrc45 lrrc45 coding upstream 1081 19342029 ~ 19353789 (-)
LOC103038385 prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040 coding upstream 81952 19422900 ~ 19436284 (-)
mms19 mms19,LOC107578808 coding upstream 116352 19457300 ~ 19487247 (-)
rbp3 LOC108437312 coding upstream 263293 19604241 ~ 19606942 (-)
LOC103040263 NA coding upstream 275463 19616411 ~ 19623377 (-)
G37776 col1a1b,LOC108444293,LOC108273947 non-coding downstream 65488 19262976 ~ 19265179 (-)
G37712 NA non-coding downstream 188146 19142219 ~ 19142521 (-)
G37711 NA non-coding downstream 191974 19138466 ~ 19138693 (-)
G37677 NA non-coding downstream 422699 18869128 ~ 18907968 (-)
G37829 ubtd1,LOC106578996,LOC103038242 non-coding upstream 148888 19489836 ~ 19508582 (-)
G37828 ubtd1b,ubtd1,LOC108437310,LOC107693664,LOC107720068 non-coding upstream 168518 19509466 ~ 19514603 (-)
G37834 NA non-coding upstream 180123 19521071 ~ 19521393 (-)
G37895 NA non-coding upstream 316571 19657519 ~ 19658113 (-)
G37916 NA non-coding upstream 435949 19776897 ~ 19792611 (-)
G37616 NA other downstream 695569 18633578 ~ 18635098 (-)
G37603 NA other downstream 757491 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 1012710 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 1534679 17789951 ~ 17795988 (-)
cntd1 NA other downstream 1625644 17692497 ~ 17705023 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 203277 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 477320 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 1170723 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 2532372 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 2672557 22013505 ~ 22038504 (-)

Expression


Co-expression Network