lrrc45 (lrrc45)


Basic Information

Item Value
gene id lrrc45
gene name lrrc45
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19342029 ~ 19353789 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669299.1
CCCCGTACCTGCCTAAGTTCCTGGATACATGTCAACTGCTAGCCAGCAAAGCTGTAAACAGCGGCAACTGTTAAAACATTAGAACCGCAGGGATGTCGCTCAGCTTTATAGACTCTGTATGTGAGTGAGGGAGCTTGTCTGGTGATGGAGGACTTCAGGCGGGCCTACATGCAGCTCTGTAAGGAGGCTGGGGTGGAGCCCCAGGAGTCAGTCCTGGCTCAACTGCAGGGGACGCGAGCGGCAGCTGGAGGAACCAGGCTGGACCTAAGTGGTCAGAGTCTGACCGTGGAGTCTTGTGCCGTGCTGGGAAGGACGCTGCAGAAGGACACGCTGTTCACTGAGCTCGGCCTCAGTGACTGCATGCTTAGTGAAGAAGGTGCCAAGCTTTTCCTGAGTGGGCTGTGTTCCAATACCACAGTAAAAGTCCTGGATCTTAAGGGGAATAACTTAAGAGGAGCCGGAGCAGAAGCTTTGGGGAAATTGTTGGTGAGGAATAAGACGTTACGAAGGCTTGTTTTGGAGTGGAATGCTCTCGGGATGTGGGAAGAGGGGTTTTCTATATTCTGTGAGGGTCTCGCATCTAACAGTTGCCTCACTCAGCTAGACCTGCGTAACAATCAAATCAACCATCAGGGGGCAGCTGAGCTTGCCTTAGCTCTGAAACGAAACTCTGTCCTCCAAGAGCTTGATCTGCGGTGGAATAACATTGGCCTCCTGGGAGGTCGAGCCTTGATGGACGCTCTGCAGCAGAACCGCTCTCTCCTCCAGCTGGAGATGGCCGGCAACAACATCCCCAGTGACATCCTCAGATCCATCGGTCAGACAAATACAGCAGATACAAAGCAGTCTATGGAGCACAACTCAGATCGTCAGTCCACTATGAGAGAGAGGCGCTCTAGAACCCATGTGCTCAGCAAGGAGATCCAGATCTTAAAGGAGGAGAAGGGACGGCAGtttctaaGCCTCATGGAGACCATTGATAAACAAAAGGATGAAATGGGGAGAAGCAGCAGAAACTCATCCATTCGCGTGGGCCAACTTCAGGAAGCTCTGAGCGAACGGAAATCAACCGTGAATGCCCTCACAGCCAAGCTGCAGATGACGGAGGCGGCTCTAGCGATGTCTGAGCAGAAGGTCAATAACCTGGGAGACCTGCTGACCAGAGTGAAGCTGGAGAAGACTGAGCTTATGGAGAGACACTCCAAAGATATAAAGAAACATCAAGAGGATAACGTCCTGCATGAAGGAAAGCTTTTGAGGGAGGTGAACAATCTTTCTGAGAAGAACCACCAGTTAAAGAACAAGCTAGAAGAGCGTGAGCGACGCTGCAAATCTCAGCAAGATCAAATCTTCGAGCTGAAGCAAGAGCTCACAAACTCCACTGCAGAGCTGAAACTACGCTTAGCCCAGGCTGAAGAGCGCTTGGacatggagaagagaagagccAAGCAGGCTCTTGAAGACATGGACAGTTTACGGCAGAAAGAGGTAGATCACATTAACAGGCATCtggaagaaagtgagagagctCTACAAGATCGTATTCTCAAACTGGAGGGTCAGCGGATCCAGCTGGAGGAGGAGCTGAGCCGAGTGAAGGCCGCTATAGTGACGGAGAGAGCACAGGCAGAGGAAGAGCTCGGGAAAGTGAGAACGCAAGTGCGGCTGGAGGAGcagcagcatctgaGCAGCATGGAGGAAAAGCTCCGGAATGCCCGCCAGGCCCGGGACGAGGCTCAGAGCCACTGCACCCAGCAGAAGCAGACCATCGCTGAGCTGCATGCACGTACAGGCCAGCAGAGCATCGAGATGGACGCCCTGCGCCGCAGAATAGACGAGCAACAGCAGGAGCTGTCTGGGAAGGAGCAGGAGAAGATGGCGGAGGTGGCGCGGGTCAGGGTGGAGCTGCAGGAGCAGATTGGCCACCTTCAGGCTGAGAGGACGGCTCAGAGCAGCCTGAAGGAGAAGATCGCTGCTCTGGAGAGAGAAATGAAGGCACTTAGTACCTCCCACCGCGAGGCTCTTCTGGATAAAGAGAGTGAGATATCGTCTCTGCTGGAGCGTCTGCGCATGAAGGAGGGCGAGATTCAGCGCATGCGTGAAGACGAGGCACAGAGGGCCAGCTTCCTTCAGAACGCTATCCTTACGTACGTCCAGGGCTCCACGCTGGGACACCTCAGTCCCAAAAAATAACCCGCTGGAGACAGAGACACGGACCAATTCAAGCTAGACTCCTACACATGAACTATCTCCAGTTTCCTCCATAAATACACCTGGGTGGTCTTATTGTGTCTTATGAATTTGTACATTGTAAATACGATGACATATCACACAGCTATAAAGATGAgatatcatttagagcattatattggtccattcatcgtGGAATGTTTACATGCTGTAAAGCAGAGCTGGTGTTTTCAAACAGTACAGTCACAGCGATGATATTCTTACCGATATGCATATATCTTTGGTGTggtattatgatttttttttctcttcaacatgaataaattattttattaaacctcTTCACCCTAACCAGCCGATATCTCAGGATAAGCCATTTCAAGCAAGGCTTTTTTGGAACAAATGcaacaaataatatttaatccatattttggacaaaaactgagagagaaatagagagtttTGAATTTTCTGTTGTTTGCTGGTAGTGAATGAAAGACAGGTCaagatttttgctattttatacTTGAATATTGCTTGTATTGtttttacacaataaaatgtttacaaaaaaa
>XM_022669300.1
CCCCGTACCTGCCTAAGTTCCTGGATACATGTCAACTGCTAGCCAGCAAAGCTGTAAACAGCGGCAACTGTTAAAACATTAGAACCGCAGGGATGTCGCTCAGCTTTATAGACTCTGTATGTGAGTGAGGGAGCTTGTCTGGTGATGGAGGACTTCAGGCGGGCCTACATGCAGCTCTGTAAGGAGGCTGGGGTGGAGCCCCAGGAGTCAGTCCTGGCTCAACTGCAGGGGACGCGAGCGGCAGCTGGAGGAACCAGGCTGGACCTAAGTGGTCAGAGTCTGACCGTGGAGTCTTGTGCCGTGCTGGGAAGGACGCTGCAGAAGGACACGCTGTTCACTGAGCTCGGCCTCAGTGACTGCATGCTTAGTGAAGAAGGTGCCAAGCTTTTCCTGAGTGGGCTGTGTTCCAATACCACAGTAAAAGTCCTGGATCTTAAGGGGAATAACTTAAGAGGAGCCGGAGCAGAAGCTTTGGGGAAATTGTTGGTGAGGAATAAGACGTTACGAAGGCTTGTTTTGGAGTGGAATGCTCTCGGGATGTGGGAAGAGGGGTTTTCTATATTCTGTGAGGGTCTCGCATCTAACAGTTGCCTCACTCAGCTAGACCTGCGTAACAATCAAATCAACCATCAGGGGGCAGCTGAGCTTGCCTTAGCTCTGAAACGAAACTCTGTCCTCCAAGAGCTTGATCTGCGGTGGAATAACATTGGCCTCCTGGGAGGTCGAGCCTTGATGGACGCTCTGCAGCAGAACCGCTCTCTCCTCCAGCTGGAGATGGCCGGCAACAACATCCCCAGTGACATCCTCAGATCCATCGGTCAGACAAATACAGCAGATACAAAGCAGTCTATGGAGCACAACTCAGATCGTCAGTCCACTATGAGAGAGAGGCGCTCTAGAACCCATGTGCTCAGCAAGGAGATCCAGATCTTAAAGGAGGAGAAGGGACGGCAGtttctaaGCCTCATGGAGACCATTGATAAACAAAAGGATGAAATGGGGAGAAGCAGCAGAAACTCATCCATTCGCGTGGGCCAACTTCAGGAAGCTCTGAGCGAACGGAAATCAACCGTGAATGCCCTCACAGCCAAGCTGCAGATGACGGAGGCGGCTCTAGCGATGTCTGAGCAGAAGGTCAATAACCTGGGAGACCTGCTGACCAGAGTGAAGCTGGAGAAGACTGAGCTTATGGAGAGACACTCCAAAGATATAAAGAAACATCAAGAGGATAACGTCCTGCATGAAGGAAAGCTTTTGAGGGAGGTGAACAATCTTTCTGAGAAGAACCACCAGTTAAAGAACAAGCTAGAAGAGCGTGAGCGACGCTGCAAATCTCAGCAAGATCAAATCTTCGAGCTGAAGCAAGAGCTCACAAACTCCACTGCAGAGCTGAAACTACGCTTAGCCCAGGCTGAAGAGCGCTTGGacatggagaagagaagagccAAGCAGGCTCTTGAAGACATGGACAGTTTACGGCAGAAAGAGGTAGATCACATTAACAGGCATCtggaagaaagtgagagagctCTACAAGATCGTATTCTCAAACTGGAGGGTCAGCGGATCCAGCTGGAGGAGGAGCTGAGCCGAGTGAAGGCCGCTATAGTGACGGAGAGAGCACAGGCAGAGGAAGAGCTCGGGAAAGTGAGAACGCAAGTGCGGCTGGAGGAGcagcagcatctgaGCAGCATGGAGGAAAAGCTCCGGAATGCCCGCCAGGCCCGGGACGAGGCTCAGAGCCACTGCACCCAGCAGAAGCAGACCATCGCTGAGCTGCATGCACGTACAGGCCAGCAGAGCATCGAGATGGACGCCCTGCGCCGCAGAATAGACGAGCAACAGCAGGAGCTGTCTGGGAAGGAGCAGGAGAAGATGGCGGAGGTGGCGCGGGTCAGGGTGGAGCTGCAGGAGCAGATTGGCCACCTTCAGGCTGAGAGGACGGCTCAGAGCAGCCTGAAGGAGAAGATCGCTGCTCTGGAGAGAGAAATGAAGGCACTTAGTACCTCCCACCGCGAGGCTCTTCTGGATAAAGAGAGTGAGATATCGTCTCTGCTGGAGCGTCTGCGCATGAAGGAGGGCGAGATTCAGCGCATGCGTGAAGACGAGGCACAGAGGGCCAGCTTCCTTCAGAACGCTATCCTTACGTACGTCCAGGGCTCCACGCTGGGACACCTCAGTCCCAAAAAATAACCCGCTGGAGACAGAGACTCCAGTTTCCTCCATAAATACACCTGGGTGGTCTTATTGTGTCTTATGAATTTGTACATTGTAAATACGATGACATATCACACAGCTATAAAGATGAgatatcatttagagcattatattggtccattcatcgtGGAATGTTTACATGCTGTAAAGCAGAGCTGGTGTTTTCAAACAGTACAGTCACAGCGATGATATTCTTACCGATATGCATATATCTTTGGTGTggtattatgatttttttttctcttcaacatgaataaattattttattaaacctcTTCACCCTAACCAGCCGATATCTCAGGATAAGCCATTTCAAGCAAGGCTTTTTTGGAACAAATGcaacaaataatatttaatccatattttggacaaaaactgagagagaaatagagagtttTGAATTTTCTGTTGTTTGCTGGTAGTGAATGAAAGACAGGTCaagatttttgctattttatacTTGAATATTGCTTGTATTGtttttacacaataaaatgtttacaaaaaaa
>XM_022669301.1
CCCCGTACCTGCCTAAGTTCCTGGATACATGTCAACTGCTAGCCAGCAAAGCTGTAAACAGCGGCAACTGTTAAAACATTAGAACCGCAGGGATGTCGCTCAGCTTTATAGACTCTGTATGTGAGTGAGGGAGCTTGTCTGGTGATGGAGGACTTCAGGCGGGCCTACATGCAGCTCTGTAAGGAGGCTGGGGTGGAGCCCCAGGAGTCAGTCCTGGCTCAACTGCAGGGGACGCGAGCGGCAGCTGGAGGAACCAGGCTGGACCTAAGTGGTCAGAGTCTGACCGTGGAGTCTTGTGCCGTGCTGGGAAGGACGCTGCAGAAGGACACGCTGTTCACTGAGCTCGGCCTCAGTGACTGCATGCTTAGTGAAGAAGGTGCCAAGCTTTTCCTGAGTGGGCTGTGTTCCAATACCACAGTAAAAGTCCTGGATCTTAAGGGGAATAACTTAAGAGGAGCCGGAGCAGAAGCTTTGGGGAAATTGTTGGTGAGGAATAAGACGTTACGAAGGCTTGTTTTGGAGTGGAATGCTCTCGGGATGTGGGAAGAGGGGTTTTCTATATTCTGTGAGGGTCTCGCATCTAACAGTTGCCTCACTCAGCTAGACCTGCGTAACAATCAAATCAACCATCAGGGGGCAGCTGAGCTTGCCTTAGCTCTGAAACGAAACTCTGTCCTCCAAGAGCTTGATCTGCGGTGGAATAACATTGGCCTCCTGGGAGGTCGAGCCTTGATGGACGCTCTGCAGCAGAACCGCTCTCTCCTCCAGCTGGAGATGGCCGGCAACAACATCCCCAGTGACATCCTCAGATCCATCGAGCAGTCTATGGAGCACAACTCAGATCGTCAGTCCACTATGAGAGAGAGGCGCTCTAGAACCCATGTGCTCAGCAAGGAGATCCAGATCTTAAAGGAGGAGAAGGGACGGCAGtttctaaGCCTCATGGAGACCATTGATAAACAAAAGGATGAAATGGGGAGAAGCAGCAGAAACTCATCCATTCGCGTGGGCCAACTTCAGGAAGCTCTGAGCGAACGGAAATCAACCGTGAATGCCCTCACAGCCAAGCTGCAGATGACGGAGGCGGCTCTAGCGATGTCTGAGCAGAAGGTCAATAACCTGGGAGACCTGCTGACCAGAGTGAAGCTGGAGAAGACTGAGCTTATGGAGAGACACTCCAAAGATATAAAGAAACATCAAGAGGATAACGTCCTGCATGAAGGAAAGCTTTTGAGGGAGGTGAACAATCTTTCTGAGAAGAACCACCAGTTAAAGAACAAGCTAGAAGAGCGTGAGCGACGCTGCAAATCTCAGCAAGATCAAATCTTCGAGCTGAAGCAAGAGCTCACAAACTCCACTGCAGAGCTGAAACTACGCTTAGCCCAGGCTGAAGAGCGCTTGGacatggagaagagaagagccAAGCAGGCTCTTGAAGACATGGACAGTTTACGGCAGAAAGAGGTAGATCACATTAACAGGCATCtggaagaaagtgagagagctCTACAAGATCGTATTCTCAAACTGGAGGGTCAGCGGATCCAGCTGGAGGAGGAGCTGAGCCGAGTGAAGGCCGCTATAGTGACGGAGAGAGCACAGGCAGAGGAAGAGCTCGGGAAAGTGAGAACGCAAGTGCGGCTGGAGGAGcagcagcatctgaGCAGCATGGAGGAAAAGCTCCGGAATGCCCGCCAGGCCCGGGACGAGGCTCAGAGCCACTGCACCCAGCAGAAGCAGACCATCGCTGAGCTGCATGCACGTACAGGCCAGCAGAGCATCGAGATGGACGCCCTGCGCCGCAGAATAGACGAGCAACAGCAGGAGCTGTCTGGGAAGGAGCAGGAGAAGATGGCGGAGGTGGCGCGGGTCAGGGTGGAGCTGCAGGAGCAGATTGGCCACCTTCAGGCTGAGAGGACGGCTCAGAGCAGCCTGAAGGAGAAGATCGCTGCTCTGGAGAGAGAAATGAAGGCACTTAGTACCTCCCACCGCGAGGCTCTTCTGGATAAAGAGAGTGAGATATCGTCTCTGCTGGAGCGTCTGCGCATGAAGGAGGGCGAGATTCAGCGCATGCGTGAAGACGAGGCACAGAGGGCCAGCTTCCTTCAGAACGCTATCCTTACGTACGTCCAGGGCTCCACGCTGGGACACCTCAGTCCCAAAAAATAACCCGCTGGAGACAGAGACACGGACCAATTCAAGCTAGACTCCTACACATGAACTATCTCCAGTTTCCTCCATAAATACACCTGGGTGGTCTTATTGTGTCTTATGAATTTGTACATTGTAAATACGATGACATATCACACAGCTATAAAGATGAgatatcatttagagcattatattggtccattcatcgtGGAATGTTTACATGCTGTAAAGCAGAGCTGGTGTTTTCAAACAGTACAGTCACAGCGATGATATTCTTACCGATATGCATATATCTTTGGTGTggtattatgatttttttttctcttcaacatgaataaattattttattaaacctcTTCACCCTAACCAGCCGATATCTCAGGATAAGCCATTTCAAGCAAGGCTTTTTTGGAACAAATGcaacaaataatatttaatccatattttggacaaaaactgagagagaaatagagagtttTGAATTTTCTGTTGTTTGCTGGTAGTGAATGAAAGACAGGTCaagatttttgctattttatacTTGAATATTGCTTGTATTGtttttacacaataaaatgtttacaaaaaaa

Function

symbol description
lrrc45 Orthologous to human LRRC45 (leucine rich repeat containing 45).

NR:

description
leucine-rich repeat-containing protein 45 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669299.1 True 2765 mRNA 0.49 18 19342029 19353789
XM_022669300.1 False 2726 mRNA 0.50 19 19342029 19353789
XM_022669301.1 False 2741 mRNA 0.50 18 19342029 19353789

Neighbor

gene id symbol gene type direction distance location
LOC111192386 rac3b,rac3,LOC100712409,LOC107571767,LOC108444292,LOC106535622,LOC106610298 coding downstream 1081 19330667 ~ 19340948 (-)
LOC103043551 LOC108444285,LOC108273949 coding downstream 51019 19279986 ~ 19291010 (-)
LOC107197613 LOC108429207,LOC108429768 coding downstream 217293 19062857 ~ 19124736 (-)
LOC103034677 NA coding downstream 829944 18503640 ~ 18512085 (-)
LOC103047794 mapt,LOC108274153,LOC108441162 coding downstream 843673 18452946 ~ 18498356 (-)
LOC103038385 prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040 coding upstream 69111 19422900 ~ 19436284 (-)
mms19 mms19,LOC107578808 coding upstream 103511 19457300 ~ 19487247 (-)
rbp3 LOC108437312 coding upstream 250452 19604241 ~ 19606942 (-)
LOC103040263 NA coding upstream 262622 19616411 ~ 19623377 (-)
LOC103045380 NA coding upstream 273811 19627600 ~ 19632328 (-)
G37776 col1a1b,LOC108444293,LOC108273947 non-coding downstream 76850 19262976 ~ 19265179 (-)
G37712 NA non-coding downstream 199508 19142219 ~ 19142521 (-)
G37711 NA non-coding downstream 203336 19138466 ~ 19138693 (-)
G37677 NA non-coding downstream 434061 18869128 ~ 18907968 (-)
G37829 ubtd1,LOC106578996,LOC103038242 non-coding upstream 136047 19489836 ~ 19508582 (-)
G37828 ubtd1b,ubtd1,LOC108437310,LOC107693664,LOC107720068 non-coding upstream 155677 19509466 ~ 19514603 (-)
G37834 NA non-coding upstream 167282 19521071 ~ 19521393 (-)
G37895 NA non-coding upstream 303730 19657519 ~ 19658113 (-)
G37916 NA non-coding upstream 423108 19776897 ~ 19792611 (-)
G37616 NA other downstream 706931 18633578 ~ 18635098 (-)
G37603 NA other downstream 768853 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 1024072 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 1546041 17789951 ~ 17795988 (-)
cntd1 NA other downstream 1637006 17692497 ~ 17705023 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 190436 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 464479 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 1157882 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 2519531 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 2659716 22013505 ~ 22038504 (-)

Expression


Co-expression Network