LOC103044175


Basic Information

Item Value
gene id LOC103044175
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19361821 ~ 19385854 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669302.1
TGAGAGAGGAGCTGTGAACTTGCTGTGGTTCCTGCAGCCTCACAAAGGCCTGTTTGAGACTCGTTCCAACCAGTGTGAACCCCACCAAGTGTTTCTACCAGACATCTGCGGCCAGAACTCTCTGGTCTCTTACCAACAAAGCCCAAAACTCCACAGTGAACCAATCAACAGAATCAGATATGAGCCTGAAGCTGAACTCATCATTACGTCATCagagagtgagagcagctcATTGGTCATTGTGGACATGAAGCACAGGAGGGAAAGTTACATTTGGAAAATTGAGAAGGGAATCCTGTGTTTTGATATCAGCTGGTCTCTGGGTCTGCTGGTGACCGCAGGGCTGGACCCGGCTCTCAGGATATGGAACCGCTACGTTACCTCTCGACCTGCTGCTGTGCTACATGGTCACAGGACTACAGTGGTGGACGTGGTTATCCACCAAACTCTGGACAAGATCTTCAGCTATTCAAAAGATGCTGTCCTGAAGATGTGGGACATCTGTTCTCAGCAGTGTGTGAAGACCCTGTCTCTGAGGTTCcccaacattcagcctgcatgTTTCCCGGAGCAGGGCAGCTTCCCACTGCTGCTCAGCCTGGCTGCAGCTCCTGCACTGCTGATCAGCTGCAGGGaatatctgtctctgctgagactgCAGAATCCAACCTCCAACTGCAGACCCTCAACCTTCTCCTGCACACTGTACATCCCCAAACTCAAACAGgtaGTGACAGCTTGTGCTAAATCCTCTGTGGTGGTGTGGGACGTGAACACAGGCAGAAAGTGCATGGAGCTGAATAACGCACACGGTCAGGAGGAGATCACAGCCATGACAGCAGACCCCAGCCAGCGCCGGCTCATCACTGCAGCTTCCAACGGCACCATCAAGgtGTGGAGCTTGCAGAACGGCCGTCCGCTCCACAAACTGGAGGCCGTGTCGGACGCAGAGGTCACAGGGGTTATCTGTCTCCATGACGACCAGCTGCTGGCCGTGGGCTGGAGTCGGCTGGTCGCTCGGTACAGCATCGGCGGTTCACACGACATGTACGTGAAGGCAGATGTGTCGTGGAAGTCAGGCCGGTTACACAGTGAGGACATCCTGGCAGCAGATCACTGTGCTGGGAAGCGGCTGTTGGCCACAGGAAGTTACGATGGAGAGATCATCGTCTGGACACTGGACACACAGAGGCCTGTCGCTCGACTTCAACGCCCACTGCCTGGGAGggTGTATCCTCCCATCGACAGGCTGCTATTCCTTCAGAAGCGAGTTGAGGACCAACAGTGGCGAAACAGAGCTCTTCTGCTCAGCTCTCAGGCTGGATACATATGTTGGTGGAGCATCTGTGGGCCCACACACAAccacgCAAAGTTCTATGTTCCTCAAAGAGAAGATGAACGCGTAAATGCTTTACGTACAAACCATGACAACAGTTTGTTGATTACTGGAGACACTACAGGATCCATCCAGGTCTGGAACATCTCCCAGTATGGCCTGTATGATGGAGATGAGgttgtcAGTGAGCAGCCTCCACTAGTGCACACTTGGAGAGCCCACGAGGAGGCGGTAGTGAGCATGGAGGTTCTGGAGCACGGCAAAGACCTGTTTCTGGTCAGTGTGTCAGTGGACCTTAACGCCTGTCTTTGGACCAGTTGTGGAGTTTGTGTGGGCTCTTTTGGACAGGAACTGTTGTGGGATCTGAATGATTTACACACATACCGAGCCAACagaaagCTCACCAGTTCATCCACAGAGGAAGAGACAGAAACCAGTGAACTCAACCAATTAGAGAACATCAAAGGCCCGCCTTATCTCACTGACTGGGGTCAGAACTCAGGAGACGTGGGTAGAGGAGCGAGATGCCCCAGCGAGGGCAACTGTCACCAAACAGAGTCTCCTCCAATCCCTGAAGACCACCACCTGCTCCTTCAATCTCCAGACAGGAAGAGCCGAGCAGAATCTCTCAGCTGCTTAATCTCACCCTCACCAGATCATCTCAACAAGTGTGTGCTGGTGGAGCATGAGAGCGTGAAGCTGCAGAGGAAGACAGCTGCAAGGCTGGAGAAGCGGCAGGTGTTTGGAGACATAAATAGAAATAAGCTCTACCGCTTCGGCAACGAGTGCACCCCCTTTCACGCCGTGAAAATAGTGgAACTGAGGGAGCCTGAGGATGTTAGGGTAATGTCGAGGATGCTGAATGGGTCGCAGTGTTTCTCCCGAGCCACTGATCTGAGCTCACCTCTGCTCTCCAGCGACGGCTCCGCCCTCTTTGTGTCCCCCAGTAACTAAGCAAACAATTAAGATCTAAGAATGAATTTAGGTAATATGACAGAGTTTTGAGATTGACCTAATCAGTCATCGTTGCAATAAGATCgaatacacagaaaaacaaatgagggaacttaatttggatcttcccatgatcttcagaagaaccagctgatgtcac

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669302.1 True 2450 mRNA 0.52 14 19361821 19385854

Neighbor

gene id symbol gene type direction distance location
dcxr dcxr coding upstream 32998 19317712 ~ 19328823 (+)
rfng rfng,LOC106610281 coding upstream 50678 19293604 ~ 19311143 (+)
LOC103043248 col1a1b,LOC108444293,LOC108273947,LOC107708989 coding upstream 84134 19249148 ~ 19277687 (+)
LOC103037098 LOC108425932 coding upstream 179574 19170742 ~ 19182247 (+)
LOC103042924 NA coding upstream 192739 19161544 ~ 19169082 (+)
fam20a fam20a coding downstream 5588 19391442 ~ 19418752 (+)
LOC103038698 zdhhc16,zdhhc16b,LOC108444288,LOC108273908,LOC107602426 coding downstream 50507 19436361 ~ 19455353 (+)
LOC103040580 mapk8b,mapk8,LOC108437314,LOC107709004,LOC106962379,LOC106579004,LOC103040580,LOC108274025,LOC107720002,LOC107388204,LOC107653969,LOC101073575 coding downstream 322811 19708665 ~ 19734677 (+)
LOC103042203 NA coding downstream 454452 19840306 ~ 19849320 (+)
LOC103045523 LOC108437318 coding downstream 908385 20294239 ~ 20299561 (+)
G37751 NA non-coding upstream 19027 19342099 ~ 19342794 (+)
G37735 NA non-coding upstream 147003 19214568 ~ 19214818 (+)
LOC111192409 NA non-coding upstream 397785 18963237 ~ 18964036 (+)
G37652 NA non-coding upstream 548870 18812739 ~ 18812951 (+)
G37592 NA non-coding upstream 720726 18589222 ~ 18641095 (+)
G37767 NA non-coding downstream 88768 19474622 ~ 19476578 (+)
G37862 NA non-coding downstream 271651 19657505 ~ 19658477 (+)
G37861 NA non-coding downstream 317394 19703248 ~ 19739691 (+)
G37882 NA non-coding downstream 355015 19740869 ~ 19741119 (+)
G37930 NA non-coding downstream 504661 19890515 ~ 19963972 (+)
G37749 NA other upstream 30160 19329368 ~ 19331661 (+)
LOC103022762 NA other upstream 654093 18645635 ~ 18707728 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other upstream 985476 18371378 ~ 18376345 (+)
G37404 NA other upstream 1247895 18107564 ~ 18113926 (+)
LOC103046566 NA other upstream 1261842 18063983 ~ 18099979 (+)
G37812 mms19,LOC106578995 other downstream 95202 19481056 ~ 19484915 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other downstream 103045 19488899 ~ 19511441 (+)
G37943 NA other downstream 769874 20155728 ~ 20158339 (+)
G38079 kif22,LOC107664627 other downstream 1633315 21019169 ~ 21030797 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 1723226 21109080 ~ 21128764 (+)

Expression


Co-expression Network