mms19 (mms19,LOC107578808)


Basic Information

Item Value
gene id mms19
gene name mms19,LOC107578808
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19457300 ~ 19487247 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669307.1
GTCGGACATCGCTAGTTCGCGATGGCGGCCGAAAGCGCTCAGTTGGCCGGGCTGGTGGAGGAATTCGTGGCGGGACAGGTGGACAGCAAGGCCGCGGACGTTGCGGCAGGTGTCAAAGCTGGAAACTTTAACATACTGGAGCTGGTGGAGGCTCTTGGgATAAGTCTCACGAGTTCTCAGTCTCAGACGCGAGGCAGAGGGGTCCAGCTCCTCTCTGAAGTCCTGCAGGAATGCTACAGCGGCCTATCCGAGAGGGAGGTGGAGGTCCTGATTGCCTTCTACGAAAACAGGCTAAAGGATCACTATGCGATCACACCGCACGTTCTCCGAGGACTCAAGGCCTTGGCGAAGAGTACAGTGCTGCCTCCTGGTTCTGCAGTATCCATCCTGAGATCCCTCTTCCAGGATGTAAATGTGCAGTCCCTGATGTTGGCTGAGCGATCGTGTGTCTACAACATGCTGATCAGCCTCATGGGGTCCAGAGAGGATGagCTGAAGGGTTTGGGCCCAGACTTCGTTTTTGGATTTGTTCAGGCTGTAGACGGAGAGAGAGATCCTCGTAACCTCCTGCTGGCGTTCCAGATAGCAAGAAACATCATCCACAGAGGCTACGACCTCAGTCAGTTTACAGAAGAATTTTTTGAAGTCACATCCTGCTACTTCCCCATAGACTTCACACCTCCACCCAACGATGCTCATGGTATCACGCAGGAGGAGCTCATCCTGGCTCTACGGGGAGTTCTGACAGGGACGCCGCGGTTCGCAGAGTTCCTCCTACCGCTCATCATTGAGAAGCTGGACTCAGACGTGCAGAACGCTAAAGTGGACTCTCTACAGACGCTGGCTGCCTGCTCTCCTGCATACGGACACAAAGAGCTGGCCGAGTTCCTTCcaggcttgtggtcatccatccgCAGAGAGGTGTTCCAGACGGCGAGTGAGAGGGTGGAGTCTGCAGGTCTGGCTGCTCTTGCTGCGCTCACCTCCTGCCTGTCCCGCTCTGTCCTCACCTCGGACTCTGAGGATGCTCTGCAGACGTTCCTGGACCAAGTCCTCAAAGATTGTCAGCACCATCTGTATGAGCCGGACCTGAAGCTGGTTTGGCCCAGTGCCAAGCTGCTGCAAGCTGCCTGCGGCGCCTCCTACAGGTCCAGCCTGATAGTGACTGCGGCGGTGCTGCCCACCCTGCTGGATCAGTACAGCTCCAGAACTCAGGTGGTGTGCCAGCGGCGCACTCTGCTGGAGGTTCTGCATGGATTCATCCAGCCCACTCCGAGCAGCCGGCCTGCAGAGGGAGAGGAGAGTGTGCTGCTGCCCTTTCAGGTGTCTCTATGCAGTGCTGTGTTTTCTGCTCTGGCTGAGTCGAGTGCAGGCCTCCAAATCACTGCTACCAAAGTTCTCGCCACTATGGGGCAGCAGCCTGGCCTGCTAGCAGAGTCGGAGGTGGAGAaggttgtggatcatatgaccAGACTAGttctggaggaggaggatgctCAAGTTAGTTTGGCAGTGGTGGAGTGTGCGGGATCACTGTCCCGTCTCCATCCTGCAGCTTTCACCTCCCGGATGGTTCCACGACTGAAGGAGGAAATATTCTCAGAAAAATCAGATGACGCCGCTCCATCGCAGGGTCAGTGTAGGGGAGCTGTTCGGCAGCGGTGTGTGGCGGCGCTGGCTGCTGTGTCCACTCAGCCGGTACTGGTGAGGGAAAGTGCTCCGGTTCTGCTGCAGGTTCTGTCTTCAGTGCATTCAGGTAGCAGCAGTTTCTCTGTGGAGGAAGTGACCTCAGTGTGCCACAGTCTGCAGAGGATAGCTGAACAGGCCGGAGGTGTGGAGGAGATAGGCCGCTTTTTCCATGATGCAGTCATTCCTCAACTGCTGGCACTGACCCTTCAGGCAGCTCTGCAGAGTCTGAAGAGCTCAGATCACAGCAGCGCTCTCACGCAGGAGGCTGTACTGTCTGCTGTAGTTCCTGTTATAAGCACTGCCTGTGCAGCACTGCAGACAGAccttgCTGCCAAGATGGCTGCCCAGGTCGTGTCCCTCTTCCTGGATGGAGATGTCTCCTTCTTGCCGGACAATGCCTACCCATCCCAAATCCAGCTGCTAAAAAGCCAGTCTGAGTCGTGGACCCAGTCTCAGCTGGTGTGTCTGCTCATGGGCTGTGTGTGTTCACTCCCTCGCAGCGTGGACGTTCCCGACGTTGACCGGCTGCTGGGACAGTTGGAGGAGCTGAGCTGCTCGTGCTCACACGCGTTCTCCTACACGTCCGCCGCCAAGTGCTTCGCCGGCCTGATCAACAAGAGAGCAGCAGgccaaGCCCTAGATGCTGTTGTGGAGAAGACTCTGGAAAGGATTAGAACGACATTAGACTGTGAATCTTCTGCCCATCGGATTCAAGCCTTCACCTTACTAGTCTGGGTGGCCAAAGCCCTGCTTCTGCGGTATCATCCCCTATCAGCAGTTTCCACTGACAAGATCTTCTCCCTGTTGAGTGATCCTCAGCTGGGTTCTCAGGCCGCCGACAGTTTCTCCCTCCTCATGAGCGACTCTCCGGATGTGCTGAACCGCAGCTGCCACGCAGACGTGCGCATCATGTACAGACAGCGCTTCTTCGCCGAGAACTCTGCCAAACTTGTGCAGGGCTTCAACTGCGCGGAACAAGAGAGCAAGTCTGTGTATCTGAAGGCCTTGTCACACATTGTAAATAATCTGCCCAGACAGGTCCAGCTCTCCGAGCTGCCGgcgttgctgccgctgctgctggaGGCGCTGTCGTGTCCGGACCAGGCGGTGCAGCTCTCCACACTGTCCTGCCTTCAGCCGGTGCTGCTGGACCCGCCCCCTGCCCTGACCACACAGCTGGAGGCCCTGTTCTCCCGCCTGCTGGCTCTCACCTCCAGCCCTGCTATGAAGGTGAAGATGGCGGCTCTGCGCTGTGTCCACGCTCTCTCCCGCCTCCCTGAACACATGGTCCTGCCGTTCCGTGCCAGAGTGCTGCGGGCCCTGGCTCCTCCTCTGGATGATAAGAAGAGGCTGGTGAGGAAGGAGGCGGTGTCTGCCCGTGGAGAATGGTTTTTGTTGGGGAGTCCAGGAGGAAGGTGAAGCCCCCCAGTGCTGCTGTCCTCCTCCCGGTGAAAGGCCCTGCACGGAGACCCCGCTGGCGAATGAACACCTCACCGCCCACAGCCTTTCCTCTCAGATCTTACTCATTTCTGTACCGCATCTGTCCTGAACACGCACAATCAGAGTGGAGTTAGCCTTCCTGGCCTCGGTCAGGTTTCGCAGGTAGTGGGAGCCACATGTATGGAAATGTACCAAACTGCTGCCCTGCTGTTTTTAATGCCTTTAGAGCAGCTGCTCGGCCTGTATTATCCAGAGGGTGGTGCTGTAGTGACCAGGATTGCTAGTATAATTATTTTGAAGCGTTATGAAGACCTCAGCAGTGTCTCACTGGACTAAAACATGAAGGGTTGGGTgctcagacagggattaagcctagttatAGACTACATATACCTTTCCATATAgaaaactcaatttaaaatgtggtGAAGTTCAacactaggcttaatccctgtctgggaaattACCACTTAGGCATAGATTAAGCCTAGTACTAGATTATAATTTCCTTTCAGTGCAAAATCTCCTCCATTCAATCTCCTAGTCTTAATCTCTGTCTGAGAATGCAGCCCTATGTTTTACAGCAGAGCAGAATAGTAGATATCCTGGTAAAACTGAAGGACACACCCCTTGTTATGTAAAATACAAACTTTAAGAGTTTACTGACATTCACTGACGTTCCtgaataattttgttttaattaagctGCACGAAATGCAGAAATGACAAATTTATAAGCAAACATAAAATACCATATTAACCACCTTTCCATCAGTGTTTTAAACATGCCCGACGTTCTCAAAGCCACACAGGGTGGCGGTTGTTCGTTTAGTCTCACTGGCCGACTAACACTGAAGCCTCACAATGAAACTTATGCCAAGGATATAGTGGATAATATTTAAGTGTCAATAACTTGTCAATAAATTTCTTATTGTAAATGTGTGGAATGGACCTGAAACATTTCTTACTCTCAGGATTTTGGAATTGTGGACCTCCTGCCTCCTTCCTTTACCCTAAGAAAAGTTGACCACCACGTTAAAACGTCCCAGTTTTCatca

Function

symbol description
mms19 Predicted to be involved in several processes, including iron-sulfur cluster assembly; positive regulation of double-strand break repair via homologous recombination; and protein maturation by iron-sulfur cluster transfer. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in cytoplasm. Predicted to be part of CIA complex and MMXD complex. Orthologous to human MMS19 (MMS19 homolog, cytosolic iron-sulfur assembly component).

NR:

description
PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X2

GO: NA

KEGG:

id description
K15075 MET18, MMS19; DNA repair/transcription protein MET18/MMS19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669307.1 True 4187 mRNA 0.54 31 19457300 19487247

Neighbor

gene id symbol gene type direction distance location
LOC103038385 prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040 coding downstream 21016 19422900 ~ 19436284 (-)
lrrc45 lrrc45 coding downstream 103511 19342029 ~ 19353789 (-)
LOC111192386 rac3b,rac3,LOC100712409,LOC107571767,LOC108444292,LOC106535622,LOC106610298 coding downstream 116352 19330667 ~ 19340948 (-)
LOC103043551 LOC108444285,LOC108273949 coding downstream 166290 19279986 ~ 19291010 (-)
LOC107197613 LOC108429207,LOC108429768 coding downstream 332564 19062857 ~ 19124736 (-)
rbp3 LOC108437312 coding upstream 116994 19604241 ~ 19606942 (-)
LOC103040263 NA coding upstream 129164 19616411 ~ 19623377 (-)
LOC103045380 NA coding upstream 140353 19627600 ~ 19632328 (-)
frmpd2 LOC108437313 coding upstream 191202 19678449 ~ 19708609 (-)
LOC103041296 LOC108437306,LOC108274024 coding upstream 253886 19741133 ~ 19780495 (-)
G37775 NA non-coding downstream 76368 19261479 ~ 19380932 (-)
G37771 col1a3,LOC108444293,LOC106610502,LOC106589632 non-coding downstream 104823 19275151 ~ 19352477 (-)
G37776 col1a1b,LOC108444293,LOC108273947 non-coding downstream 192121 19262976 ~ 19265179 (-)
G37712 NA non-coding downstream 314779 19142219 ~ 19142521 (-)
G37711 NA non-coding downstream 318607 19138466 ~ 19138693 (-)
G37829 ubtd1,LOC106578996,LOC103038242 non-coding upstream 2589 19489836 ~ 19508582 (-)
G37828 ubtd1b,ubtd1,LOC108437310,LOC107693664,LOC107720068 non-coding upstream 22219 19509466 ~ 19514603 (-)
G37834 NA non-coding upstream 33824 19521071 ~ 19521393 (-)
G37895 NA non-coding upstream 170272 19657519 ~ 19658113 (-)
G37916 NA non-coding upstream 289650 19776897 ~ 19792611 (-)
G37616 NA other downstream 822202 18633578 ~ 18635098 (-)
G37603 NA other downstream 884124 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 1139343 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 1661312 17789951 ~ 17795988 (-)
cntd1 NA other downstream 1752277 17692497 ~ 17705023 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 56978 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 331021 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 1024424 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 2386073 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 2526258 22013505 ~ 22038504 (-)

Expression


Co-expression Network