rbp4 (rbp4)


Basic Information

Item Value
gene id rbp4
gene name rbp4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21044501 ~ 21048013 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669332.1
GTGGGATTGCGAAATTGTTGGAAGCAGGCAGAAGCAGTATATAAGCTCCATCTGTAACAAACAAGTCAGAGGGCTGCACTCGTTCTCATCTGGCACGGCTCACAGagacagaaaaagacaaCATGTTACGGTTCGTGGGGTTGATGTGCATCCTGGCAACAGGCTGGGCACAAGAATGTGTGGTCAGCAGCATCCCAGTAAAAGAGAACTTTGATAAATACAGGTTCCAAGGAACATGGTATGCTGTAGCCAAAAAAGACCCAGTGGGACTTTTCCTGCTGGATAATGTTGTCGCCAGCTACCAAGTGGAGGAGGATGGCAAAATGACAGCCACCGCTGTTGGCAGAGTCGTCATCCTCAAcAACTGGGAGACCTGTGCCAACATGTTCGGATCCTTAGAGGAGACTCCCGACCCTGCCAAGTTCAAGCTCAGATACTGGGGTGCAGCTGCTTATCTCCAGACTGGATATGATGACCACTGGGTCGTTGACACAGACTACGACAACTACGCCATACACTATTCCTGCAGGGAGCTGGAAACTGATGGCACCTGCCTGGACGGCTACTCCTTTGTTTTCTCCCGTCATCCCACTGGTCTGAGGCCCGAGGACCAGCAGATCGTGACCCAGAAGAAACAGGAACTCTGCTTCCTGGGCAAATACAGGAGGGTTGCTCACAACGgtttcTGTATCTGAAACAACCCTGCTCAGAGACTAGCAAGAATGTAAACTTTCATATTTTTTacttctgtgtatatatattcatCTTAAAGTAATCCACTAGCACATCTACCTAGGACTGAATGAGTTGAGTGTGGCTGAAAAACATGACCGTCTTTACATAAAGctcatttataaagggtttataaatagttaataaagGAGTCTGAGGCCTCAGGTTGCCAAATAGggatttatacatttatttgaaaCCCTCAGATCTTTCTGGATTCTTATTTTACTTGTCttagaaagtcagtttagtcaaTTAAATATGTCCGTATACATCACATTACGATGACTGGATAAATAATTCATCTGTagagttaaatgaataaagttatttaGAGATGTGTTAGagatgctgactgatggaaaagacaaagtaagatcagcACCCAGAAAGATCTGAGGATTAAGCAGTATGAAAGAGAATAAAAACTGttcatgtgttataactgcttattaatattttaaaaatatttacaatctaattaataactataaataaactatgaccattataaactatttataaatcctttataaattagccttattttaaagtggtaccaaaaaagtGTAATGTGTATTGCATGATGAAACATCAAAGTAGAatgattgtattgtattgtagctTCTATGACTTTGAAATAAAAGTGATCTTTATGAAA

Function

symbol description
rbp4 Predicted to enable retinol binding activity. Acts upstream of or within liver development and response to retinoic acid. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including apical ectodermal ridge; digestive system; integument; reproductive system; and yolk. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human RBP4 (retinol binding protein 4).

NR:

description
retinol-binding protein 4 precursor

GO:

id name namespace
GO:0001889 liver development biological_process
GO:0006810 transport biological_process
GO:0032526 response to retinoic acid biological_process
GO:0005576 extracellular region cellular_component
GO:0005501 retinoid binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
K18271 RBP4; retinol-binding protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669332.1 True 1393 mRNA 0.40 6 21044501 21048013

Neighbor

gene id symbol gene type direction distance location
kif22 kif22,LOC107664627,LOC107654032 coding downstream 14334 21019121 ~ 21030167 (-)
LOC103035258 NA coding downstream 26248 21003600 ~ 21018253 (-)
lmf1 lmf1,LOC107580192 coding downstream 54383 20981405 ~ 20990118 (-)
pemt pemt,LOC107719881 coding downstream 75955 20876434 ~ 20968546 (-)
rasd1 rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420 coding downstream 175421 20866800 ~ 20869080 (-)
LOC103035971 fra10ac1,LOC108274300,LOC108431384 coding upstream 34651 21082664 ~ 21105307 (-)
noc3l noc3l coding upstream 248702 21296715 ~ 21320551 (-)
tbc1d12 tbc1d12 coding upstream 276415 21324428 ~ 21349420 (-)
LOC103036789 LOC108431390,LOC108274191,LOC107654041 coding upstream 313225 21361238 ~ 21390673 (-)
LOC103039938 NA coding upstream 345775 21393788 ~ 21404557 (-)
G38204 NA non-coding downstream 612 21043450 ~ 21043889 (-)
G38205 NA non-coding downstream 9454 21031923 ~ 21035047 (-)
G38200 NA non-coding downstream 44875 20998097 ~ 20999626 (-)
G38175 NA non-coding downstream 168984 20874665 ~ 20875517 (-)
G38183 NA non-coding downstream 170865 20873332 ~ 20873636 (-)
G38222 NA non-coding upstream 92706 21140719 ~ 21141112 (-)
G38239 plce1 non-coding upstream 216924 21264937 ~ 21279439 (-)
G38246 NA non-coding upstream 241835 21289848 ~ 21291204 (-)
G38252 NA non-coding upstream 269090 21317103 ~ 21317345 (-)
G38231 NA non-coding upstream 273696 21321709 ~ 21324160 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 365070 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 1218849 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 1443217 19544225 ~ 19601284 (-)
G37616 NA other downstream 2409403 18633578 ~ 18635098 (-)
G37603 NA other downstream 2471325 18572691 ~ 18573176 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 825307 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 965492 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 2332632 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 2417206 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 2635113 23683126 ~ 23720782 (-)

Expression


Co-expression Network