LOC111192392 (LOC108416223)


Basic Information

Item Value
gene id LOC111192392
gene name LOC108416223
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 22998679 ~ 23000623 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669357.1
agtatagtAAAATAACAATAGTTGTTgtattaaataagtaaacataTAGGCTAAAATCTCTGTTGttcttttttgtacttttcaGCAATGCAAGAAAGCATGGACAACAAAGTCACTGTGAATGATTCGGAAACCTCCAATACGTCATCCAtgtcctcctcttcctcatcctcatcctcatcttcaACCCCCAAGAAGCGCAAATCCAAAAAGAAGCACAGCAAGGCAGCCAAAAAAcacaagagagagcacaagacGTTTCGGCAGCGCGTACAAACACCGAGTGAAATTGTCTGCCGCTACAGATCCATCCTCAAAACCTTGCCAAAGACAAAGACCATGACCAAAGCGTTCCAGAAGCACGGCATTGACAGAAACACTGTGGTGTGCACTTCAGCGATTGGAGAGCTCGCTATTGCAGCTCCTGAGGTCTATGAGGAGACACTGGCCAAGAGGTCTACTGGAGAGACAGTGCTGGCATTTGCTAAGCGGTGTGAGGCTGCTATTCAGAAAGATgaagaattaaaagaaaaaatagaaatcatGAAAGCTAAGGGTACCCTCCTCCCCATGAGGAGAAACAAACCTGTTTAATGGTTATGTACACTTGATTGTGTTTAAAGTGTATTGGGCACACTGGTTCAAGTTtgagtgaaaaagaaaaatcagtacatacatacatcagtATGTGAGGtatatttttagtttctttagGTTTTGTTTAGATTTTGATTAGGATTCTTTGTTTAGGAAGACATAGACCTTGtgaagattaagattaagagaCTTTAAAGACTTATTTAATTTGAGTATTggtcaattttatttattttaaatacatt
>XM_022669358.1
TTGAAGAACTGGAAGAAGAGAGATTTCCTTCGTGACAGTTGTCTGCCCTCACAGCAATGCAAGAAAGCATGGACAACAAAGTCACTGTGAATGATTCGGAAACCTCCAATACGTCATCCAtgtcctcctcttcctcatcctcatcctcatcttcaACCCCCAAGAAGCGCAAATCCAAAAAGAAGCACAGCAAGGCAGCCAAAAAAcacaagagagagcacaagacGTTTCGGCAGCGCGTACAAACACCGAGTGAAATTGTCTGCCGCTACAGATCCATCCTCAAAACCTTGCCAAAGACAAAGACCATGACCAAAGCGTTCCAGAAGCACGGCATTGACAGAAACACTGTGGTGTGCACTTCAGCGATTGGAGAGCTCGCTATTGCAGCTCCTGAGGTCTATGAGGAGACACTGGCCAAGAGGTCTACTGGAGAGACAGTGCTGGCATTTGCTAAGCGGTGTGAGGCTGCTATTCAGAAAGATgaagaattaaaagaaaaaatagaaatcatGAAAGCTAAGGGTACCCTCCTCCCCATGAGGAGAAACAAACCTGTTTAATGGTTATGTACACTTGATTGTGTTTAAAGTGTATTGGGCACACTGGTTCAAGTTtgagtgaaaaagaaaaatcagtacatacatacatcagtATGTGAGGtatatttttagtttctttagGTTTTGTTTAGATTTTGATTAGGATTCTTTGTTTAGGAAGACATAGACCTTGtgaagattaagattaagagaCTTTAAAGACTTATTTAATTTGAGTATTggtcaattttatttattttaaatacatt

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 106-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669357.1 True 842 mRNA 0.39 2 22998867 23000623
XM_022669358.1 False 811 mRNA 0.41 3 22998679 23000623

Neighbor

gene id symbol gene type direction distance location
dkk1 dkk1 coding upstream 627192 22368776 ~ 22371487 (+)
prkg1 prkg1,prkg1b,LOC107695529,LOC106589397 coding upstream 648597 22097751 ~ 22350082 (+)
LOC111192422 NA coding upstream 900781 22070247 ~ 22097898 (+)
LOC103021762 asah2,LOC107598643 coding upstream 986874 21987804 ~ 22011805 (+)
LOC103023313 NA coding upstream 1014395 21959447 ~ 21984284 (+)
tfam NA coding downstream 387357 23387980 ~ 23396378 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding downstream 418230 23418853 ~ 23594042 (+)
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding downstream 628064 23628687 ~ 23685558 (+)
LOC111192424 NA coding downstream 1400495 24401118 ~ 24402659 (+)
LOC111192396 LOC108411010 coding downstream 1631080 24631703 ~ 24648610 (+)
G38523 NA non-coding upstream 30310 22968091 ~ 22968369 (+)
G38521 NA non-coding upstream 31474 22966911 ~ 22967205 (+)
G38469 NA non-coding upstream 254892 22743249 ~ 22743787 (+)
G38460 NA non-coding upstream 380786 22614763 ~ 22617893 (+)
G38461 NA non-coding upstream 382226 22615547 ~ 22616453 (+)
G38544 NA non-coding downstream 10833 23011456 ~ 23080378 (+)
G38552 NA non-coding downstream 96357 23096980 ~ 23097337 (+)
G38565 NA non-coding downstream 171869 23172492 ~ 23222765 (+)
G38577 NA non-coding downstream 269562 23270185 ~ 23270581 (+)
G38583 NA non-coding downstream 305435 23306058 ~ 23306305 (+)
plce1 plce1,LOC107743958 other upstream 1701856 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 1869915 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 1967882 21019169 ~ 21030797 (+)
G37943 NA other upstream 2840340 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 3487238 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 746846 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 746948 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 747050 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 747152 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 747254 23747877 ~ 23747949 (+)

Expression


Co-expression Network