bicc1 (bicc1,LOC107653928,LOC107695510)


Basic Information

Item Value
gene id bicc1
gene name bicc1,LOC107653928,LOC107695510
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 23418853 ~ 23594042 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669360.1
CGCGGAATTACAGCGGTGTTCAGCGGGGAGGAGAGGACTGCGATGCCGCGTAGCTTTCTCCCTTTTCTCGCTCCGCGGGAATGTGTGTGAGCGGGAGCTGAGCGCGCGCCTCTGTGTGTTtgaaagagtgagtgaggggCAGTGAGTGAGCCTGCGTGTGAGACTCGGTAGCGGTAACTCCGTGAAACCATGGCCGCTCAGCACGACTCTCTAAGCGGCTACGTGCAGCACTCGGACCCGGGCTCCAACAGCAGCGAGCGGAGCGCGGACTCCCCGCCGCCTGGATCCGAGGACTCGGGCGGAGCTCCGGCTCCAGCTGACCCGGAGTGGACGGAGGAGCGGTTCAGGGTGGACCGCAAGAAGCTGGAGGTCATGTTATTAGCCGCCGCCGAGGGGAGGGTGAATGGAGGCGAGGATTTCTTTCAGAAGGTCATGGAGGAGACCGGTACTCAGATTGCATGGCCTTCAAAGCTGAAGATAGGAGCCAAGTCTAAGAAGGATCCACATATAAAAGTGAGTGGGAAACGGGACAATGTGAAGGAAGCCAAGGAGAAGATCATGTCTGTCCTTGATACAAAGAGTAATCGCGTGACTCTGAAGATGGACGTCTCACACACAGAACATTCCCACGTCATCGGGAAAGGAGGGAACAACATCAAGAAGGTGATGGAGGACACGGGCTGCCACATCCACTTCCCCGACTCCAACCGCAACAACCAGGCCGAGAAGAGCAACCAGGTGTCCATCGCAGGCCAGCCAGGAGGGGTGGAGGCAGCCCGGGCCAGAATCAGGgAGCTGCTCCCCCTGGTGTTGATGTTCGAACTGCCGGTCATAGTGCAGCTGAACCCTGATCCCAGCTCTCCAGCCATCCAGCACATCTCCCAAACCTACAACATCTCTGTGGCCTTCAAACAGCGCTCCAGGCTCTATGGTGCTACAGGGGTCGTGAGAGGATCACAGAACAACGTCGCAGCTGTGAAACGAGGCACCGCCGTGTTGCTGGAGCATTTAGCCGGGAGCCTGGCAAGCGCCATCACCGTGAGCACTCAGCTGGACATCGCACCCCAGCACCACCTCTCCATGATGGGCCGTAACGGCAGCAACATCAAGCACATCATGCAGCGCACTGGCGCCCAGGTCCACTTCCCCGACCCAAACTGCCCCCAGAAAAAATCCACCGTCTACATCCAGGGCTCCATCGACTCGGTCTGCCTCGCACGCCAGTACCTCATGGGCTGTCTGCCGCTGGTGCTGATGTTCGATATTAAAGAGGACGTGGCAGTAGACCCACAGTGCGTCACGTCTCTCATGGAGCAGCTGGACGTGTTCATCAGCGTCAAACCCAAACCCAAGCAGCCTAGCAAGTCTGTGATCGTGAAGAGCGTGGAGAGGAATGCTCTGAACATGTATGAAGCCCGGCGGTATCTCCTGGGTTTGGACAGCAGCGGGGTGTTCATCTCCACTTCCtctagcagtagcagcagcagcagcccacCAGCCGCCCCCACCCCACTCAGCTGCGCTGTGGGGCTCGATATCCTCACTTCAGCTGGCCTGGGCCTTACCAGCTTAGGTCTTCTGGGGCCAACAGCCGCCTCCTTAAGCGCACCATCAACCCCCAACTCCCTGCTCAATGCTCTCAACAGCTCCATCAGTCCCCTGCACGCTCCCTCCTCCGGGACCCCCAGCCCTACACTATGGTCAAACTCACTGGCCAGTCCAACCAGCACTCCAGTGTATGGGCTCTATTGCACACCTGCAGGGCAAGGATTTTCATCAGCGCTGATGATCCATCCTGCCACCCAGGCCACACTGACCAACATCCTGCTGTCTGGGGTCCAGAGTTACACCCACAACACACCCTCTCCTCCCCCAGGCCTGGCCCCCATCGACCCACAGGTCAATGGGGTCCCGGACTGCAGCAAGGCCGTGTCCACTCTCAACGGCAAGcaccCCAGCTCCATGTACAGCAGAATGTCTACTGCCTCTTTGGCTGAGAAGGTCCTAAATGCAGCTCATGGTGATTCTGTCCAGGAGGCCAGCGCCCACCGTCCATCTGAGCCCCTGTCCAGCAAGTCCAGCCAAGACCAAGGCTCCGATACGTTTGTGGAGGTGGGGATGCCGCGTAGCCCCTCTCACTCGGGGAACAGCAGTGAACTGAAACAGATGCTGGCCTCCTGCAAAACGGCCTCAGGCAAGAGGCAGGCTGTGGAGTTACTGCAGGGCACCAAAAACTCCCATCTACAttcaGATTGTTTACTCTCAGACTCTGAATCCAGTGCGTCTGACAGTCCTGTAGCGGATAAGCGAGCGCCGGGCAGTGAGAGAGCAGCAGAGCGAGCCGCCCAGCAGAACTCAGAGAGAATCCGCCTCCCTCCACCGTCCACCTTCCCCAACATGCAGGCTTTCGACTATGAGCAGAAGAAGTTGCTGGCGACCAAAGCCATGCTCAAGAAGCCAGTGGTGACAGAGGTCCGCACACCAACCAACACGTGGAGCGGCCTGGGCTTCTCCAAATCCATGCCAGCGGAAACCATTAAAGAGTTACGGAGGGCCAACCATGTGCCCTACAAACCCACCATGTCCACTACCTATGAAGGATCGCCGCTGTCGCTCTCTCGCTCCAACAGCAGAGAGGGTGTGGGAAGCGGCAGTGACTCAGATAACTGGCGGGAAAGGAACGGGAGCGGGCTCCCGACGCACAGCGACTTCCCAACACCCATCAGCCCCAAGAGGAAACAGAACAAGACAGTGGAGCATTACTTGAGCAGCAGCAACTACATGGACTGCATCTCCTCTGTGACGGGGAGCAACGGCTGTAACCTCAGCACCTCCCTGAAAGGCTCAGACCTGCCAGAGCTCTTCAGCAAGCTCGGCCTGGGGAAGTACACCGACGTCTTCCAGCAACAGGAGATCGACCTGCAGACGTTCCTCACCCTCACAGATCAGGACCTGAAGGAGCTGGGCATCACTACGTTCGGAGCACGTCGGAAAATGCTGCTGGCCATCTCAGACCTAAACAAAAACCGGAGGAAACTCTTTGAGCCGCCCAACATTCGCTCATCATTCCTAGAGGGCGGAGCCAGCGGACGCCTTCCACGTCAGTTTCACGCGGACATCGCCAGCGTGAGCGGCCGCTGGTAATAAACCCTGCAGCCGTCTGCCCACTGCCAGCTGATACCCGGTGGGGGGGCAGCCTTAACTGCACAAAGCCATTCCCCGTTCCCCACACCCGGCCTTACAAACAGTACTGGACCAAACCCCGCCCTCTGAATCAgtgccaaaaacaaacaaagaatgtCTTTCTTCTCTTAGGAATAAAGGGTAAGTCCACAGGACTcttgtaaatgtttattatgattattatgtaCGATTATTTGGTACTCTATGCAGTATGGTACTCAGAACACGGAAATGAAGGTAGCATTGAAGGATCCATGGAGCTCCCGCACTGCCATATACGGAGCTGTCGGAGTACTTGGTTCAtagttttgatttttatttatatcctCGTTTTAGGCTTATGTCATACTAATTCTTTGCACTTTAAGAATACTAAATACTCTGCCTGAGGGCCGATACTCCTCTCTGACGGTCTGCCCTATAAAATGTGCAAGGAGCGTGATAGCACTTACATGGATAATCATGATAGAgataaggtttaaaaaaaaaaacatcacaaagcTCTCCAACCTACAACGCCTACAGCCATATTGTGGATGTGGAGCGTCCACACCTGCCATGTTTATTATTTGGTCAGTGCCATGTTCATCAGTTCAGTTTTCTGGTCATTTTAGCCAAATTTGAATCAGACAGTTgggtttaaaactgattttttttgttgactaatcacagggcatctcacaatacaatACGCTGAACATGATAACTGATATcatgattctgtgatactcaatatatcacaagacaattttCTACAATACTTCACACTATCTGTTTTACTAAA
>XM_022669361.1
CGCGGAATTACAGCGGTGTTCAGCGGGGAGGAGAGGACTGCGATGCCGCGTAGCTTTCTCCCTTTTCTCGCTCCGCGGGAATGTGTGTGAGCGGGAGCTGAGCGCGCGCCTCTGTGTGTTtgaaagagtgagtgaggggCAGTGAGTGAGCCTGCGTGTGAGACTCGGTAGCGGTAACTCCGTGAAACCATGGCCGCTCAGCACGACTCTCTAAGCGGCTACGTGCAGCACTCGGACCCGGGCTCCAACAGCAGCGAGCGGAGCGCGGACTCCCCGCCGCCTGGATCCGAGGACTCGGGCGGAGCTCCGGCTCCAGCTGACCCGGAGTGGACGGAGGAGCGGTTCAGGGTGGACCGCAAGAAGCTGGAGGTCATGTTATTAGCCGCCGCCGAGGGGAGGGTGAATGGAGGCGAGGATTTCTTTCAGAAGGTCATGGAGGAGACCGGTACTCAGATTGCATGGCCTTCAAAGCTGAAGATAGGAGCCAAGTCTAAGAAGGATCCACATATAAAAGTGAGTGGGAAACGGGACAATGTGAAGGAAGCCAAGGAGAAGATCATGTCTGTCCTTGATACAAAGAGTAATCGCGTGACTCTGAAGATGGACGTCTCACACACAGAACATTCCCACGTCATCGGGAAAGGAGGGAACAACATCAAGAAGGTGATGGAGGACACGGGCTGCCACATCCACTTCCCCGACTCCAACCGCAACAACCAGGCCGAGAAGAGCAACCAGGTGTCCATCGCAGGCCAGCCAGGAGGGGTGGAGGCAGCCCGGGCCAGAATCAGGgAGCTGCTCCCCCTGGTGTTGATGTTCGAACTGCCGGTCATAGTGCAGCTGAACCCTGATCCCAGCTCTCCAGCCATCCAGCACATCTCCCAAACCTACAACATCTCTGTGGCCTTCAAACAGCGCTCCAGGCTCTATGGTGCTACAGGGGTCGTGAGAGGATCACAGAACAACGTCGCAGCTGTGAAACGAGGCACCGCCGTGTTGCTGGAGCATTTAGCCGGGAGCCTGGCAAGCGCCATCACCGTGAGCACTCAGCTGGACATCGCACCCCAGCACCACCTCTCCATGATGGGCCGTAACGGCAGCAACATCAAGCACATCATGCAGCGCACTGGCGCCCAGGTCCACTTCCCCGACCCAAACTGCCCCCAGAAAAAATCCACCGTCTACATCCAGGGCTCCATCGACTCGGTCTGCCTCGCACGCCAGTACCTCATGGGCTGTCTGCCGCTGGTGCTGATGTTCGATATTAAAGAGGACGTGGCAGTAGACCCACAGTGCGTCACGTCTCTCATGGAGCAGCTGGACGTGTTCATCAGCGTCAAACCCAAACCCAAGCAGCCTAGCAAGTCTGTGATCGTGAAGAGCGTGGAGAGGAATGCTCTGAACATGTATGAAGCCCGGCGGTATCTCCTGGGTTTGGACAGCAGCGGGGTGTTCATCTCCACTTCCtctagcagtagcagcagcagcagcccacCAGCCGCCCCCACCCCACTCAGCTGCGCTGTGGGGCTCGATATCCTCACTTCAGCTGGCCTGGGCCTTACCAGCTTAGGTCTTCTGGGGCCAACAGCCGCCTCCTTAAGCGCACCATCAACCCCCAACTCCCTGCTCAATGCTCTCAACAGCTCCATCAGTCCCCTGCACGCTCCCTCCTCCGGGACCCCCAGCCCTACACTATGGTCAAACTCACTGGCCAGTCCAACCAGCACTCCAGGATTTTCATCAGCGCTGATGATCCATCCTGCCACCCAGGCCACACTGACCAACATCCTGCTGTCTGGGGTCCAGAGTTACACCCACAACACACCCTCTCCTCCCCCAGGCCTGGCCCCCATCGACCCACAGGTCAATGGGGTCCCGGACTGCAGCAAGGCCGTGTCCACTCTCAACGGCAAGcaccCCAGCTCCATGTACAGCAGAATGTCTACTGCCTCTTTGGCTGAGAAGGTCCTAAATGCAGCTCATGGTGATTCTGTCCAGGAGGCCAGCGCCCACCGTCCATCTGAGCCCCTGTCCAGCAAGTCCAGCCAAGACCAAGGCTCCGATACGTTTGTGGAGGTGGGGATGCCGCGTAGCCCCTCTCACTCGGGGAACAGCAGTGAACTGAAACAGATGCTGGCCTCCTGCAAAACGGCCTCAGGCAAGAGGCAGGCTGTGGAGTTACTGCAGGGCACCAAAAACTCCCATCTACAttcaGATTGTTTACTCTCAGACTCTGAATCCAGTGCGTCTGACAGTCCTGTAGCGGATAAGCGAGCGCCGGGCAGTGAGAGAGCAGCAGAGCGAGCCGCCCAGCAGAACTCAGAGAGAATCCGCCTCCCTCCACCGTCCACCTTCCCCAACATGCAGGCTTTCGACTATGAGCAGAAGAAGTTGCTGGCGACCAAAGCCATGCTCAAGAAGCCAGTGGTGACAGAGGTCCGCACACCAACCAACACGTGGAGCGGCCTGGGCTTCTCCAAATCCATGCCAGCGGAAACCATTAAAGAGTTACGGAGGGCCAACCATGTGCCCTACAAACCCACCATGTCCACTACCTATGAAGGATCGCCGCTGTCGCTCTCTCGCTCCAACAGCAGAGAGGGTGTGGGAAGCGGCAGTGACTCAGATAACTGGCGGGAAAGGAACGGGAGCGGGCTCCCGACGCACAGCGACTTCCCAACACCCATCAGCCCCAAGAGGAAACAGAACAAGACAGTGGAGCATTACTTGAGCAGCAGCAACTACATGGACTGCATCTCCTCTGTGACGGGGAGCAACGGCTGTAACCTCAGCACCTCCCTGAAAGGCTCAGACCTGCCAGAGCTCTTCAGCAAGCTCGGCCTGGGGAAGTACACCGACGTCTTCCAGCAACAGGAGATCGACCTGCAGACGTTCCTCACCCTCACAGATCAGGACCTGAAGGAGCTGGGCATCACTACGTTCGGAGCACGTCGGAAAATGCTGCTGGCCATCTCAGACCTAAACAAAAACCGGAGGAAACTCTTTGAGCCGCCCAACATTCGCTCATCATTCCTAGAGGGCGGAGCCAGCGGACGCCTTCCACGTCAGTTTCACGCGGACATCGCCAGCGTGAGCGGCCGCTGGTAATAAACCCTGCAGCCGTCTGCCCACTGCCAGCTGATACCCGGTGGGGGGGCAGCCTTAACTGCACAAAGCCATTCCCCGTTCCCCACACCCGGCCTTACAAACAGTACTGGACCAAACCCCGCCCTCTGAATCAgtgccaaaaacaaacaaagaatgtCTTTCTTCTCTTAGGAATAAAGGGTAAGTCCACAGGACTcttgtaaatgtttattatgattattatgtaCGATTATTTGGTACTCTATGCAGTATGGTACTCAGAACACGGAAATGAAGGTAGCATTGAAGGATCCATGGAGCTCCCGCACTGCCATATACGGAGCTGTCGGAGTACTTGGTTCAtagttttgatttttatttatatcctCGTTTTAGGCTTATGTCATACTAATTCTTTGCACTTTAAGAATACTAAATACTCTGCCTGAGGGCCGATACTCCTCTCTGACGGTCTGCCCTATAAAATGTGCAAGGAGCGTGATAGCACTTACATGGATAATCATGATAGAgataaggtttaaaaaaaaaaacatcacaaagcTCTCCAACCTACAACGCCTACAGCCATATTGTGGATGTGGAGCGTCCACACCTGCCATGTTTATTATTTGGTCAGTGCCATGTTCATCAGTTCAGTTTTCTGGTCATTTTAGCCAAATTTGAATCAGACAGTTgggtttaaaactgattttttttgttgactaatcacagggcatctcacaatacaatACGCTGAACATGATAACTGATATcatgattctgtgatactcaatatatcacaagacaattttCTACAATACTTCACACTATCTGTTTTACTAAA

Function

symbol description
bicc1 Enables RNA binding activity. Involved in negative regulation of canonical Wnt signaling pathway. Predicted to be active in cytoplasm. Implicated in diffuse cystic renal dysplasia.

NR:

description
PREDICTED: protein bicaudal C homolog 1

GO: NA

KEGG:

id description
K18756 BICC1, BICC; protein bicaudal C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669360.1 True 3967 mRNA 0.55 22 23418853 23594042
XM_022669361.1 False 3934 mRNA 0.55 21 23418853 23594042

Neighbor

gene id symbol gene type direction distance location
tfam NA coding upstream 22475 23387980 ~ 23396378 (+)
LOC111192392 LOC108416223 coding upstream 418230 22998679 ~ 23000623 (+)
dkk1 dkk1 coding upstream 1047366 22368776 ~ 22371487 (+)
prkg1 prkg1,prkg1b,LOC107695529,LOC106589397 coding upstream 1068771 22097751 ~ 22350082 (+)
LOC111192422 NA coding upstream 1320955 22070247 ~ 22097898 (+)
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding downstream 34645 23628687 ~ 23685558 (+)
LOC111192424 NA coding downstream 807076 24401118 ~ 24402659 (+)
LOC111192396 LOC108411010 coding downstream 1037661 24631703 ~ 24648610 (+)
LOC103037544 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 1058587 24652629 ~ 24663580 (+)
mto1 mto1 coding downstream 1103094 24697136 ~ 24713813 (+)
G38585 ube2d2,ube2d1b,ube2d1,LOC105891213,LOC107717106,LOC107553913,LOC106607701 non-coding upstream 31432 23380968 ~ 23387421 (+)
G38589 NA non-coding upstream 63728 23349878 ~ 23355125 (+)
G38583 NA non-coding upstream 112548 23306058 ~ 23306305 (+)
G38577 NA non-coding upstream 148272 23270185 ~ 23270581 (+)
G38565 NA non-coding upstream 196088 23172492 ~ 23222765 (+)
G38717 NA non-coding downstream 184232 23778274 ~ 23845827 (+)
G38710 NA non-coding downstream 189923 23783965 ~ 23784746 (+)
G38723 NA non-coding downstream 236444 23830486 ~ 23951902 (+)
LOC107197179 NA non-coding downstream 791694 24385736 ~ 24388302 (+)
G38832 NA non-coding downstream 832404 24426446 ~ 24426725 (+)
plce1 plce1,LOC107743958 other upstream 2122030 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 2290089 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 2388056 21019169 ~ 21030797 (+)
G37943 NA other upstream 3260514 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 3907412 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 153427 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 153529 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 153631 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 153733 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 153835 23747877 ~ 23747949 (+)

Expression


Co-expression Network